##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546161_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 169301 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.88258781696505 31.0 31.0 34.0 30.0 34.0 2 32.262000815116274 33.0 31.0 34.0 31.0 34.0 3 32.21019367871424 33.0 31.0 34.0 30.0 34.0 4 35.950691372171455 37.0 35.0 37.0 35.0 37.0 5 35.95464882073939 37.0 35.0 37.0 35.0 37.0 6 35.99155941193496 37.0 35.0 37.0 35.0 37.0 7 36.15555135527847 37.0 35.0 37.0 35.0 37.0 8 36.04098617255657 37.0 35.0 37.0 35.0 37.0 9 37.73087577746144 39.0 38.0 39.0 35.0 39.0 10 37.47020986290689 39.0 37.0 39.0 35.0 39.0 11 37.37641833184683 39.0 37.0 39.0 34.0 39.0 12 37.19587598419383 39.0 37.0 39.0 34.0 39.0 13 37.1432537315196 39.0 37.0 39.0 33.0 39.0 14 38.389542885157205 40.0 38.0 41.0 34.0 41.0 15 38.47788849445662 40.0 38.0 41.0 34.0 41.0 16 38.50085350942995 40.0 38.0 41.0 34.0 41.0 17 38.40478792210324 40.0 37.0 41.0 34.0 41.0 18 38.20109154700799 40.0 37.0 41.0 34.0 41.0 19 38.037129136862745 40.0 37.0 41.0 34.0 41.0 20 37.80127701549311 40.0 35.0 41.0 34.0 41.0 21 37.73694189638573 40.0 35.0 41.0 33.0 41.0 22 37.629801359708445 39.0 35.0 41.0 33.0 41.0 23 37.572282502761354 39.0 35.0 41.0 33.0 41.0 24 37.49144423246171 39.0 35.0 41.0 33.0 41.0 25 37.473110022976826 39.0 35.0 41.0 33.0 41.0 26 37.432265609771946 39.0 35.0 41.0 33.0 41.0 27 37.37201197866522 39.0 35.0 41.0 33.0 41.0 28 37.28183531107318 39.0 35.0 41.0 33.0 41.0 29 37.20058948263743 39.0 35.0 41.0 33.0 41.0 30 37.01698749564385 39.0 35.0 41.0 32.0 41.0 31 36.80414764236478 39.0 35.0 41.0 31.0 41.0 32 36.544922947885716 39.0 35.0 41.0 31.0 41.0 33 36.19780745536057 39.0 35.0 41.0 30.0 41.0 34 35.76148398414658 39.0 35.0 41.0 26.0 41.0 35 35.53687810467747 39.0 35.0 41.0 24.0 41.0 36 35.3766900372709 39.0 35.0 41.0 23.0 41.0 37 35.31119721679139 39.0 35.0 41.0 23.0 41.0 38 35.22312331291605 39.0 35.0 41.0 23.0 41.0 39 35.12102113986332 39.0 35.0 41.0 22.0 41.0 40 35.00807437640652 39.0 35.0 41.0 22.0 41.0 41 34.88261735016332 39.0 35.0 41.0 21.0 41.0 42 34.82289531662542 39.0 35.0 41.0 20.0 41.0 43 34.71570752683091 38.0 34.0 41.0 20.0 41.0 44 34.60150855576754 38.0 34.0 41.0 18.0 41.0 45 34.54185149526583 38.0 34.0 40.0 20.0 41.0 46 34.47431497746617 38.0 34.0 40.0 20.0 41.0 47 34.41345296247512 38.0 34.0 40.0 20.0 41.0 48 34.312366731442815 38.0 34.0 40.0 19.0 41.0 49 34.2304416394469 38.0 34.0 40.0 19.0 41.0 50 34.116413960933485 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 4.0 15 1.0 16 9.0 17 25.0 18 63.0 19 105.0 20 197.0 21 327.0 22 547.0 23 759.0 24 1288.0 25 2063.0 26 3218.0 27 4105.0 28 3981.0 29 3573.0 30 3378.0 31 3612.0 32 4364.0 33 5596.0 34 9069.0 35 14417.0 36 10989.0 37 14427.0 38 25186.0 39 57998.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.80311988706505 20.90418839817839 27.288675199792085 20.00401651496447 2 37.27680285408828 23.452903408721745 27.831495383961112 11.438798353228865 3 27.36782417115079 23.952605123419236 36.973201575891466 11.706369129538514 4 24.16996946267299 25.87580699464268 36.43865068723752 13.515572855446809 5 21.941984985321998 28.500717656717917 36.13091476128316 13.426382596676925 6 20.33242567970656 36.82967023230814 34.062409554580306 8.775494533405 7 77.22399749558478 4.750119609452986 15.746510652624615 2.2793722423376117 8 77.8300187240477 4.588277682943397 15.25803155326903 2.3236720397398716 9 70.78576027312302 7.379164919285769 17.95264056325716 3.8824342443340556 10 32.540268515838655 29.86337942481143 25.4227677332089 12.173584326141015 11 26.939002132296913 24.70570167925765 34.68201605424658 13.673280134198853 12 25.18591148309815 23.209549854991995 36.36127370777491 15.243264954134943 13 19.362555448579748 26.961447362980728 37.198835210660306 16.47716197777922 14 15.777225178823514 29.757059911046007 37.65837177571308 16.807343134417398 15 15.535052953024495 26.135108475437242 42.401403417581705 15.928435153956563 16 18.143425024069558 24.833875759741524 39.80366329791318 17.219035918275733 17 17.994577704797962 25.34598141771165 36.45400795033697 20.205432927153414 18 18.57874436654243 25.7913420475957 39.01689889604905 16.613014689812818 19 21.076071612099163 26.36546742192899 35.73044459276673 16.82801637320512 20 22.04239785943379 25.69565448520682 36.644792411149375 15.617155244210016 21 20.58345786498603 26.595235704455376 36.64006709942647 16.181239331132126 22 19.839811932593427 24.68148445667775 36.228964979533494 19.249738631195328 23 17.785482661059294 27.41153330458769 35.99801536907638 18.804968665276636 24 17.159969521739388 25.30227228427475 40.82669328592271 16.711064908063154 25 16.84632695613139 28.895281185580714 37.88577740237801 16.37261445590989 26 16.933745223005182 29.219555702565252 35.96730084287748 17.879398231552088 27 16.36316383246407 28.87460794679299 36.52784094600741 18.234387274735532 28 15.756551940035795 27.45287978216313 39.52605123419236 17.26451704360872 29 17.243253140855636 25.44462229992735 38.43745754602749 18.874667013189526 30 17.410411043053497 28.570416004630804 37.362449129065986 16.656723823249713 31 19.65965942315757 29.084884318462382 34.69914530924212 16.556310949137927 32 20.44524249709098 28.017554533050603 34.098440056467474 17.438762913390942 33 20.16585844147406 28.674963526500143 33.31344764649943 17.84573038552637 34 17.495466654065837 28.262089414711077 35.11379141292727 19.128652518295816 35 19.423393837012185 29.045900496748395 33.7924761224092 17.73822954383022 36 19.979208628419208 30.95906108056066 32.206543375408295 16.85518691561184 37 18.53976054482844 31.62592069745601 33.03347292691715 16.8008458307984 38 18.16291693492655 30.815529736977336 33.357156779936325 17.664396548159786 39 18.422809079686473 31.631827337109648 31.695028381403535 18.250335201800343 40 19.647846143850302 29.858063449123158 32.47293282378722 18.02115758323932 41 18.27337109644952 29.143950714998727 32.1208971004306 20.461781088121157 42 17.98867106514433 29.783639789487363 31.206549282047952 21.02113986332036 43 18.558071127754708 29.279212763066965 32.024028210110984 20.138687899067342 44 17.67857248332851 30.06243318113892 32.66194529270353 19.597049042829042 45 17.708105681596685 32.8013419885293 29.830302242751078 19.660250087122936 46 18.148150335792465 32.22367263040384 31.579848908157658 18.048328125646037 47 17.99930301652087 30.095510363199274 33.30990366270725 18.595282957572607 48 17.866994288279457 29.52374764472744 33.69796988795105 18.91128817904206 49 18.335981476778045 29.676729611756574 33.24020531479436 18.74708359667102 50 17.39918842771159 30.847425591106965 33.181138918258014 18.572247062923434 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 249.0 1 469.0 2 689.0 3 2823.5 4 4958.0 5 3448.5 6 1939.0 7 1953.0 8 1967.0 9 1987.0 10 2007.0 11 1974.0 12 1941.0 13 1894.0 14 1847.0 15 1763.0 16 1679.0 17 1587.0 18 1495.0 19 1541.5 20 1588.0 21 1737.0 22 1886.0 23 2004.0 24 2122.0 25 2497.5 26 2873.0 27 3770.0 28 4667.0 29 5245.0 30 5823.0 31 6837.0 32 7851.0 33 8408.5 34 8966.0 35 9900.5 36 10835.0 37 10729.0 38 10623.0 39 10647.5 40 10672.0 41 10436.5 42 10201.0 43 10070.5 44 9940.0 45 9490.5 46 9041.0 47 8832.5 48 8624.0 49 8383.0 50 8142.0 51 7682.5 52 7223.0 53 6469.0 54 5715.0 55 5210.0 56 4705.0 57 4487.5 58 4270.0 59 3996.5 60 3723.0 61 3402.5 62 3082.0 63 2760.5 64 2439.0 65 2082.0 66 1725.0 67 1503.5 68 1282.0 69 1116.5 70 951.0 71 813.0 72 675.0 73 551.0 74 427.0 75 320.5 76 214.0 77 160.0 78 106.0 79 92.5 80 79.0 81 58.0 82 37.0 83 24.5 84 12.0 85 7.5 86 3.0 87 3.0 88 3.0 89 3.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 169301.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.23659635796599 #Duplication Level Percentage of deduplicated Percentage of total 1 70.08799220220848 31.004542205893642 2 11.310803412869026 10.007028901187825 3 5.93780460123109 7.880047961913987 4 3.490312846327427 6.175982421840391 5 2.0656136087484813 4.568785772086403 6 1.5101544870682173 4.008245668956474 7 1.0521677593366536 3.2581024329448733 8 0.6836419959141709 2.4193596021287527 9 0.6168800822506777 2.4559807679812877 >10 3.183208043475358 24.69152574408893 >50 0.054744769204064465 1.501467799953928 >100 0.00534095309307946 0.35439837921807904 >500 0.0 0.0 >1k 0.001335238273269865 1.6745323418054232 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2835 1.6745323418054232 No Hit GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAA 244 0.14412200754868548 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0354398379218079 0.0 2 0.0 0.0 0.0 0.13467138410287002 0.0 3 0.0 0.0 0.0 0.20791371580793971 0.0 4 0.0 0.0 0.0 0.30950791785045567 0.0 5 0.0 0.0 0.0 0.5788506860561957 0.0 6 0.0 0.0 0.0 0.8605973975345687 0.0 7 0.0 0.0 0.0 1.0791430647190507 0.0 8 0.0 0.0 0.0 1.4849292089237511 0.0 9 0.0 0.0 0.0 1.6786669895629678 0.0 10 0.0 0.0 0.0 1.9999881867206928 0.0 11 0.0 0.0 0.0 2.285278881991246 0.0 12 0.0 0.0 0.0 2.5587562979545306 0.0 13 0.0 0.0 0.0 2.70524096136467 0.0 14 0.0 0.0 0.0 2.754266070489838 0.0 15 0.0 0.0 0.0 2.829280394090998 0.0 16 0.0 0.0 0.0 2.960407794401687 0.0 17 0.0 0.0 0.0 3.0879912109201952 0.0 18 0.0 0.0 0.0 3.266371728459962 0.0 19 0.0 0.0 0.0 3.383323193601928 0.0 20 0.0 0.0 0.0 3.4961400109863496 0.0 21 0.0 0.0 0.0 3.6337647149160373 0.0 22 0.0 0.0 0.0 3.819233200040165 0.0 23 0.0 0.0 0.0 3.979303134653664 0.0 24 0.0 0.0 0.0 4.108658543068263 0.0 25 0.0 0.0 0.0 4.228563328037047 0.0 26 0.0 0.0 0.0 4.3384268255946505 0.0 27 0.0 0.0 0.0 4.458331610563435 0.0 28 0.0 0.0 0.0 4.580008387428308 0.0 29 0.0 0.0 0.0 4.710545123773634 0.0 30 0.0 0.0 0.0 4.875931034075404 0.0 31 0.0 0.0 0.0 5.039544952481084 0.0 32 0.0 0.0 0.0 5.174807000549317 0.0 33 0.0 0.0 0.0 5.3236543198209105 0.0 34 0.0 0.0 0.0 5.4683669913349595 0.0 35 0.0 0.0 0.0 5.676871371108263 0.0 36 0.0 0.0 0.0 5.838713297617852 0.0 37 0.0 0.0 0.0 5.99346725654308 0.0 38 0.0 0.0 0.0 6.160034494775577 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCACGA 20 7.837451E-4 44.000004 24 GTACAGG 20 7.837451E-4 44.000004 2 TTCAACC 20 7.837451E-4 44.000004 25 CGCGAGG 20 7.837451E-4 44.000004 2 TATTGCG 20 7.837451E-4 44.000004 1 GCCGATT 20 7.837451E-4 44.000004 9 TGCGAAG 20 7.837451E-4 44.000004 1 TAGGGTC 20 7.837451E-4 44.000004 5 TTGCGAG 20 7.837451E-4 44.000004 1 CGGTAGT 20 7.837451E-4 44.000004 12 CGCCGGT 20 7.837451E-4 44.000004 28 GTTATAC 20 7.837451E-4 44.000004 31 TAGACGG 30 2.5148984E-6 44.0 2 GTGGGAT 45 4.7475623E-10 44.0 5 TGAGTAG 25 4.4267224E-5 44.0 1 CGAGGGT 25 4.4267224E-5 44.0 4 CGGGATC 35 1.4363286E-7 44.0 6 CGGGATA 35 1.4363286E-7 44.0 6 TGGGCGA 70 0.0 44.0 6 CGTTTTT 1725 0.0 42.469566 1 >>END_MODULE