##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546160_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 172051 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.81714142899489 31.0 31.0 34.0 30.0 34.0 2 32.22683390390059 33.0 31.0 34.0 31.0 34.0 3 32.29484280823709 34.0 31.0 34.0 30.0 34.0 4 35.98447553341742 37.0 35.0 37.0 35.0 37.0 5 35.92217423903377 37.0 35.0 37.0 35.0 37.0 6 35.981825156494295 37.0 35.0 37.0 35.0 37.0 7 36.127235529000124 37.0 35.0 37.0 35.0 37.0 8 36.009125201248466 37.0 35.0 37.0 35.0 37.0 9 37.69001633236657 39.0 38.0 39.0 35.0 39.0 10 37.44599566407635 39.0 37.0 39.0 35.0 39.0 11 37.36483949526594 39.0 37.0 39.0 34.0 39.0 12 37.18459061557329 39.0 37.0 39.0 34.0 39.0 13 37.107305392005856 39.0 37.0 39.0 33.0 39.0 14 38.31927161132455 40.0 38.0 41.0 33.0 41.0 15 38.428448541420856 40.0 38.0 41.0 34.0 41.0 16 38.44992473162028 40.0 38.0 41.0 34.0 41.0 17 38.35734753067405 40.0 37.0 41.0 34.0 41.0 18 38.16312023760397 40.0 37.0 41.0 34.0 41.0 19 38.01049688755079 40.0 37.0 41.0 34.0 41.0 20 37.77252675078901 40.0 35.0 41.0 34.0 41.0 21 37.69106253378359 40.0 35.0 41.0 33.0 41.0 22 37.613905179278234 39.0 35.0 41.0 33.0 41.0 23 37.51793363595678 39.0 35.0 41.0 33.0 41.0 24 37.46189792561508 39.0 35.0 41.0 33.0 41.0 25 37.449058709336185 39.0 35.0 41.0 33.0 41.0 26 37.40909962743605 39.0 35.0 41.0 33.0 41.0 27 37.32543838745488 39.0 35.0 41.0 33.0 41.0 28 37.238313058337354 39.0 35.0 41.0 33.0 41.0 29 37.14256237975949 39.0 35.0 41.0 33.0 41.0 30 36.971886243032586 39.0 35.0 41.0 32.0 41.0 31 36.78313988294168 39.0 35.0 41.0 31.0 41.0 32 36.51124375911794 39.0 35.0 41.0 31.0 41.0 33 36.139958500677125 39.0 35.0 41.0 29.0 41.0 34 35.77676967875804 39.0 35.0 41.0 26.0 41.0 35 35.49596921842942 39.0 35.0 41.0 24.0 41.0 36 35.32871067299812 39.0 35.0 41.0 23.0 41.0 37 35.222625849312124 39.0 35.0 41.0 23.0 41.0 38 35.136773398585305 39.0 35.0 41.0 22.0 41.0 39 35.036425246002636 39.0 35.0 41.0 21.0 41.0 40 34.9402212134774 39.0 35.0 41.0 21.0 41.0 41 34.84537143056419 39.0 35.0 41.0 20.0 41.0 42 34.75717083887917 38.0 35.0 41.0 20.0 41.0 43 34.661083050955824 38.0 34.0 41.0 19.0 41.0 44 34.54286810306247 38.0 34.0 41.0 18.0 41.0 45 34.47780018715381 38.0 34.0 40.0 19.0 41.0 46 34.41519084457516 38.0 34.0 40.0 19.0 41.0 47 34.368518636915795 38.0 34.0 40.0 19.0 41.0 48 34.28994309826737 38.0 34.0 40.0 18.0 41.0 49 34.20977500857304 38.0 34.0 40.0 18.0 41.0 50 34.07371070205927 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 0.0 14 4.0 15 9.0 16 12.0 17 28.0 18 65.0 19 105.0 20 207.0 21 357.0 22 477.0 23 780.0 24 1247.0 25 2144.0 26 3376.0 27 4116.0 28 4145.0 29 3755.0 30 3606.0 31 3976.0 32 4330.0 33 5716.0 34 9125.0 35 14693.0 36 11356.0 37 14673.0 38 25659.0 39 58087.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.857995594329587 20.94437114576492 27.504635253500414 19.692998006405077 2 37.157586994553945 23.658682599926767 27.73189345019791 11.451836955321387 3 27.275633387774555 23.931276191361864 37.011118796170905 11.781971624692678 4 24.01148496666686 25.728417736601354 36.616468372749935 13.643628923981844 5 21.741809114739237 28.58745372011787 36.414783988468535 13.255953176674359 6 20.35849835223277 36.7786295923883 34.08756705860472 8.775304996774212 7 76.97252558834299 4.8433313378010014 15.940622257353922 2.2435208165020835 8 77.57525384914939 4.616654364112967 15.422752555928184 2.3853392308094694 9 70.61336464187944 7.423961499787854 18.07429192506873 3.8883819332639744 10 32.54674486053554 30.0300492295889 25.38723983005039 12.035966079825169 11 27.035007061859567 24.781605454196722 34.60601798303991 13.577369500903803 12 25.258789544960507 23.037355202817768 36.29970183259615 15.404153419625576 13 19.321596503362375 27.189031159365534 37.07621577323003 16.41315656404206 14 15.721501182788824 29.533684779513052 38.024190501653585 16.720623536044545 15 15.475062626779268 26.14282974234384 42.41416789207852 15.967939738798378 16 18.25853961906644 24.63862459387042 39.7300800344084 17.372755752654736 17 18.06964214099308 25.444780907986587 36.388628953042996 20.096947997977345 18 18.854874426768806 25.655764860419296 38.983789690266256 16.505571022545638 19 21.05654718659002 26.6537247676561 35.521444222933894 16.768283822819978 20 21.917338463595097 25.474423281468866 36.88731829515667 15.720919959779367 21 20.561345182533085 26.343351680606332 36.710045277272435 16.385257859588144 22 19.507006643379 24.606076105340858 36.32236952996495 19.564547721315193 23 17.523873735113426 27.431401154308897 36.22704895641409 18.81767615416359 24 17.188508058657025 25.473260835449953 40.8564902267351 16.481740879157925 25 16.926376481392143 28.80657479468297 37.756827917303596 16.51022080662129 26 17.059476550557683 29.252954065945563 35.727778391290954 17.9597909922058 27 16.188223259382394 28.957692777141663 36.55718362578538 18.29690033769057 28 15.80170995809382 27.429076262271067 39.342985510110374 17.426228269524735 29 16.894409215872038 25.70807493127038 38.55077854822117 18.846737304636417 30 17.508180713858103 28.60954019447722 37.326141667296326 16.556137424368355 31 19.71392203474551 29.153564931328503 34.72574992298795 16.406763110938037 32 20.430570005405375 27.7533987015478 34.20148676845819 17.61454452458864 33 20.217842383944294 28.674055948526888 33.198295854136276 17.90980581339254 34 17.583739705087446 28.017273947841048 35.297673364293146 19.101312982778364 35 19.361119668005415 29.129153564931325 33.73011490778897 17.779611859274286 36 20.17715677328234 30.975117842965165 31.978889980296536 16.86883540345595 37 18.547988677775777 31.728382863220787 33.13494254610552 16.58868591289792 38 18.04058099052025 30.799588494109305 33.34243916048148 17.817391354888954 39 18.343979401456544 31.43602768946417 31.99516422456132 18.224828684517963 40 19.734846063085946 29.81034693201434 32.56069421276249 17.894112792137214 41 18.1120714206834 29.10590464455307 32.37412162672696 20.407902308036572 42 17.98768969665971 29.609824993751854 31.219812729946355 21.182672579642084 43 18.505559398085452 29.309332697862843 32.07537299986632 20.109734904185387 44 17.68429128572342 29.88416225421532 32.728667662495425 19.702878797565837 45 17.59827028032386 32.90594068037965 29.72258225758641 19.773206781710073 46 18.126601995919813 32.20905429204131 31.566221643582427 18.098122068456448 47 17.698821860959832 30.29741181393889 33.29826621176279 18.705500113338484 48 17.761593945981133 29.581345066288485 34.02305130455505 18.634009683175336 49 18.212623001319376 29.689452546047395 33.170397149682366 18.92752730295087 50 17.542472871416035 30.675206770085616 33.252349594015726 18.529970764482627 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 259.0 1 516.5 2 774.0 3 2924.5 4 5075.0 5 3573.5 6 2072.0 7 2060.5 8 2049.0 9 2084.0 10 2119.0 11 2036.0 12 1953.0 13 1877.5 14 1802.0 15 1731.5 16 1661.0 17 1562.0 18 1463.0 19 1580.0 20 1697.0 21 1795.5 22 1894.0 23 1983.0 24 2072.0 25 2534.0 26 2996.0 27 3875.5 28 4755.0 29 5243.0 30 5731.0 31 6847.5 32 7964.0 33 8587.5 34 9211.0 35 10137.0 36 11063.0 37 10906.0 38 10749.0 39 10754.0 40 10759.0 41 10618.5 42 10478.0 43 10244.5 44 10011.0 45 9558.5 46 9106.0 47 8863.5 48 8621.0 49 8506.0 50 8391.0 51 7828.0 52 7265.0 53 6575.5 54 5886.0 55 5378.5 56 4871.0 57 4510.5 58 4150.0 59 3990.5 60 3831.0 61 3484.5 62 3138.0 63 2824.5 64 2511.0 65 2172.5 66 1834.0 67 1577.0 68 1320.0 69 1128.5 70 937.0 71 819.0 72 701.0 73 546.5 74 392.0 75 319.0 76 246.0 77 185.0 78 124.0 79 96.0 80 68.0 81 52.0 82 36.0 83 23.5 84 11.0 85 6.5 86 2.0 87 1.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 172051.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.20317231518561 #Duplication Level Percentage of deduplicated Percentage of total 1 70.30058381107663 31.075088200591683 2 11.106874243938359 9.819181521758082 3 5.79866407195077 7.689580415109473 4 3.5909640772103297 6.349280155302788 5 2.147215063377689 4.7456858722123085 6 1.4766212591384842 3.916280637717886 7 0.9966864776731709 3.0839692881761804 8 0.8033976752748119 2.841018070223364 9 0.540419712828065 2.1499439119795873 >10 3.1728291169200022 24.5787586238964 >50 0.05654026192605059 1.5640711184474372 >100 0.007889338873402409 0.5231007085108486 >500 0.0 0.0 >1k 0.0013148898122337348 1.6640414760739546 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2863 1.6640414760739546 No Hit GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAA 282 0.16390488866673256 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018599136302607948 0.0 2 0.0 0.0 0.0 0.10810747975890869 0.0 3 0.0 0.0 0.0 0.18773503205444897 0.0 4 0.0 0.0 0.0 0.30281718792683565 0.0 5 0.0 0.0 0.0 0.5509994129647604 0.0 6 0.0 0.0 0.0 0.8387048026457271 0.0 7 0.0 0.0 0.0 1.0444577479933275 0.0 8 0.0 0.0 0.0 1.4455016245183114 0.0 9 0.0 0.0 0.0 1.6204497503647175 0.0 10 0.0 0.0 0.0 1.9226857152820966 0.0 11 0.0 0.0 0.0 2.2138784430198024 0.0 12 0.0 0.0 0.0 2.4731039052374006 0.0 13 0.0 0.0 0.0 2.61259742750696 0.0 14 0.0 0.0 0.0 2.6573515992351107 0.0 15 0.0 0.0 0.0 2.7439538276441287 0.0 16 0.0 0.0 0.0 2.8787975658380365 0.0 17 0.0 0.0 0.0 3.0095727429657484 0.0 18 0.0 0.0 0.0 3.201376336086393 0.0 19 0.0 0.0 0.0 3.3077401468169323 0.0 20 0.0 0.0 0.0 3.427472086764971 0.0 21 0.0 0.0 0.0 3.564059493987248 0.0 22 0.0 0.0 0.0 3.733195389739089 0.0 23 0.0 0.0 0.0 3.9063998465571257 0.0 24 0.0 0.0 0.0 4.046474591836142 0.0 25 0.0 0.0 0.0 4.171437538869289 0.0 26 0.0 0.0 0.0 4.302793939006458 0.0 27 0.0 0.0 0.0 4.442868684285473 0.0 28 0.0 0.0 0.0 4.564925516271338 0.0 29 0.0 0.0 0.0 4.686401125247746 0.0 30 0.0 0.0 0.0 4.867161481188718 0.0 31 0.0 0.0 0.0 5.027579031798711 0.0 32 0.0 0.0 0.0 5.166491331058814 0.0 33 0.0 0.0 0.0 5.319934205555329 0.0 34 0.0 0.0 0.0 5.464077511900541 0.0 35 0.0 0.0 0.0 5.662274558125207 0.0 36 0.0 0.0 0.0 5.83431656892433 0.0 37 0.0 0.0 0.0 5.999383903609976 0.0 38 0.0 0.0 0.0 6.173169583437469 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCTTAT 20 7.837807E-4 44.000004 25 ACACGCG 20 7.837807E-4 44.000004 36 CATGCGG 20 7.837807E-4 44.000004 2 TAGACGG 20 7.837807E-4 44.000004 2 TCGGGAT 30 2.5151367E-6 44.000004 5 CTTATGG 30 2.5151367E-6 44.000004 2 TCGTAGG 20 7.837807E-4 44.000004 2 TACTACC 20 7.837807E-4 44.000004 34 TGGGACG 20 7.837807E-4 44.000004 6 CTGTGCG 20 7.837807E-4 44.000004 1 GGGTCAA 25 4.4270244E-5 44.0 7 GACCGAT 25 4.4270244E-5 44.0 9 TATGCGG 35 1.4365105E-7 44.0 2 TACGAGG 25 4.4270244E-5 44.0 2 CCTCAAT 35 1.4365105E-7 44.0 26 CGGGATC 35 1.4365105E-7 44.0 6 ATGCGGG 75 0.0 44.0 3 GCTACTA 25 4.4270244E-5 44.0 32 AGGGCGA 130 0.0 42.307693 6 CGTTTTT 1585 0.0 41.362778 1 >>END_MODULE