SRR1546159_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546159_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1557221
Sequences flagged as poor quality	0
Sequence length	50
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31303	2.0101835256524283	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCC	2007	0.1288834404365212	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	1736	0.11148064404474381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAAGCG	20	7.857343E-4	44.000004	1
TATCTCG	60	0.0	44.000004	25
CCCGATA	20	7.857343E-4	44.000004	16
CGTTCGA	35	1.4465331E-7	44.0	14
TAGCCGT	45	4.802132E-10	44.0	44
TAAGACG	45	4.802132E-10	44.0	1
CGTTTTT	17750	0.0	42.252396	1
TATCGTA	60	3.6379788E-12	40.333336	41
CGGTCTA	110	0.0	40.0	31
TACCGGT	55	7.8216544E-11	40.0	37
ACGGGAT	720	0.0	39.72222	5
CTAGACG	100	0.0	39.6	1
TAGTTCG	50	1.3478711E-9	39.6	1
ATAACGG	140	0.0	39.285713	2
GGCGATA	355	0.0	39.042255	8
CGGGCAC	125	0.0	38.72	6
ACGGGTA	205	0.0	38.634148	5
CGATTCA	40	4.1257954E-7	38.500004	10
ACGATAC	40	4.1257954E-7	38.500004	37
GTTCGAA	40	4.1257954E-7	38.500004	15