##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546158_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1600879 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.811098152952223 31.0 31.0 34.0 30.0 34.0 2 32.19990205380919 33.0 31.0 34.0 30.0 34.0 3 32.227784860692154 33.0 31.0 34.0 30.0 34.0 4 35.9461077320647 37.0 35.0 37.0 35.0 37.0 5 35.865499516203286 37.0 35.0 37.0 35.0 37.0 6 35.93526181554009 37.0 35.0 37.0 35.0 37.0 7 36.13173075541624 37.0 35.0 37.0 35.0 37.0 8 36.01352694363534 37.0 35.0 37.0 35.0 37.0 9 37.690704294328306 39.0 38.0 39.0 35.0 39.0 10 37.436537677113634 39.0 37.0 39.0 34.0 39.0 11 37.364298613449236 39.0 37.0 39.0 34.0 39.0 12 37.139739480622836 39.0 37.0 39.0 34.0 39.0 13 37.04219556880938 39.0 37.0 39.0 33.0 39.0 14 38.22455725885592 40.0 37.0 41.0 33.0 41.0 15 38.33062523776 40.0 37.0 41.0 33.0 41.0 16 38.36598456223113 40.0 37.0 41.0 34.0 41.0 17 38.27929156419692 40.0 37.0 41.0 34.0 41.0 18 38.073049868228644 39.0 37.0 41.0 34.0 41.0 19 37.86645773977921 39.0 37.0 41.0 34.0 41.0 20 37.58733858086713 39.0 35.0 41.0 33.0 41.0 21 37.50849377123443 39.0 35.0 41.0 33.0 41.0 22 37.429076775946214 39.0 35.0 41.0 33.0 41.0 23 37.36662233685369 39.0 35.0 41.0 33.0 41.0 24 37.30054238952476 39.0 35.0 41.0 33.0 41.0 25 37.26449531788474 39.0 35.0 41.0 33.0 41.0 26 37.23251726082983 39.0 35.0 41.0 33.0 41.0 27 37.149282363001824 39.0 35.0 41.0 33.0 41.0 28 37.06407667287784 39.0 35.0 41.0 33.0 41.0 29 36.98456035715379 39.0 35.0 41.0 32.0 41.0 30 36.79949702632116 39.0 35.0 41.0 32.0 41.0 31 36.55041011844118 39.0 35.0 41.0 31.0 41.0 32 36.237959271125426 39.0 35.0 41.0 30.0 41.0 33 35.81123995005244 39.0 35.0 41.0 27.0 41.0 34 35.376347619026795 39.0 35.0 41.0 23.0 41.0 35 35.08192061985947 39.0 35.0 41.0 21.0 41.0 36 34.92411981167846 39.0 35.0 41.0 21.0 41.0 37 34.81270414565998 39.0 35.0 41.0 20.0 41.0 38 34.729962726727 39.0 35.0 41.0 18.0 41.0 39 34.6164682027811 39.0 34.0 41.0 18.0 41.0 40 34.529396038051594 39.0 34.0 41.0 18.0 41.0 41 34.39793825766969 38.0 34.0 41.0 18.0 41.0 42 34.337194753632225 38.0 34.0 41.0 17.0 41.0 43 34.2542915485805 38.0 34.0 41.0 17.0 41.0 44 34.13693789474407 38.0 34.0 40.0 15.0 41.0 45 34.07843066215498 38.0 34.0 40.0 17.0 41.0 46 34.03497828380534 38.0 34.0 40.0 17.0 41.0 47 33.967295467052786 38.0 34.0 40.0 16.0 41.0 48 33.898966130482066 38.0 34.0 40.0 15.0 41.0 49 33.81483047750642 38.0 33.0 40.0 15.0 41.0 50 33.645518493277756 38.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 3.0 11 6.0 12 4.0 13 11.0 14 14.0 15 25.0 16 83.0 17 225.0 18 610.0 19 1285.0 20 2226.0 21 3751.0 22 5906.0 23 8940.0 24 13812.0 25 22523.0 26 35759.0 27 43978.0 28 41608.0 29 36827.0 30 35069.0 31 37263.0 32 42731.0 33 54189.0 34 89000.0 35 137405.0 36 102816.0 37 130708.0 38 225387.0 39 528711.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.93152012113345 20.741480149342955 26.63393048444011 20.693069245083482 2 37.40201476813675 24.121997977361186 27.37639759157313 11.099589662928928 3 26.12208667863093 24.13199248662766 38.219128366353736 11.52679246838768 4 23.151343730538034 25.703004411951184 38.76482857230309 12.380823285207688 5 21.77247624586243 29.004940410861785 37.452674436981184 11.769908906294605 6 19.562065590216374 36.72632347604035 34.64552911244385 9.066081821299424 7 75.1452795620406 4.999066138040414 17.75518324620412 2.1004710537148656 8 75.24060219416958 4.785558433835411 17.320047299015105 2.6537920729799067 9 69.04756699288328 7.561720779646682 19.26666537570922 4.124046851760814 10 31.362707612505382 31.979243902880857 26.22334355063687 10.434704933976896 11 27.036022085366852 24.220318962270103 35.6093121341463 13.134346818216741 12 24.430703382329334 23.311068481752837 37.831716200912126 14.426511935005706 13 19.095884198618386 28.508213300318136 38.032918165582785 14.362984335480695 14 15.691629411092281 30.219023424006437 38.696241252461924 15.393105912439353 15 14.909059335527544 25.813693602077358 45.2348990773194 14.042347985075699 16 17.426114028605536 24.497229334634284 41.67779076369919 16.398865873060984 17 17.55710456567923 24.51859259819137 38.01224202453777 19.91206081159163 18 18.553931933643955 25.63529161167084 40.342586791381486 15.468189663303722 19 20.898081616411986 26.27999992504118 36.50913029654333 16.3127881620035 20 21.702639612362958 26.214348492297045 37.17426488822703 14.908747007112968 21 19.524336317735443 25.97491752968213 38.291151298755246 16.209594853827177 22 18.792863170795542 24.500914809926297 37.52244860479774 19.18377341448042 23 17.02933201072661 26.823951091868903 37.78861487970047 18.358102017704024 24 16.204847461925603 25.693447162465123 42.17214417829205 15.929561197317224 25 16.26937451237726 28.784873809950657 38.877579129965476 16.068172547706602 26 17.00497039438958 29.04454365383018 36.731882921819825 17.218603029960416 27 16.417543112252705 29.230753854601126 37.01329082335392 17.338412209792246 28 14.930360133401713 27.864067178094032 40.509057836351154 16.6965148521531 29 16.60356591597491 26.225030124075587 38.855841072310895 18.315562887638603 30 17.228909867641466 28.861519202887916 37.484094675487654 16.425476253982968 31 19.53782890524518 28.774754369318355 35.6060639186347 16.081352806801764 32 21.024012433169528 27.584095987266995 34.34194589347477 17.049945686088705 33 20.2633053466252 28.86089454605876 33.76451312060437 17.111286986711676 34 17.215479745814644 28.33018610400911 35.837686670885184 18.616647479291064 35 18.23298325482438 29.230816320284042 35.52367168286922 17.01252874202235 36 20.603805784197306 30.2140261693732 33.16265626571403 16.01951178071547 37 17.373892717688218 32.3801486558322 34.31558537528445 15.930373251195123 38 17.609888067742784 31.28450057749524 34.25736735880726 16.84824399595472 39 17.874305303523876 31.320793139269114 33.72509727468472 17.07980428252229 40 19.455436669479706 28.656631762925244 34.188780038966094 17.69915152862896 41 16.820946492520672 29.428145412613944 33.70054826129895 20.050359833566432 42 18.218928476168404 29.303651306563456 32.75687918949527 19.720541027772867 43 18.194504394148463 29.28784748878585 33.44212773107774 19.07552038598795 44 18.1635214154224 29.954418791176597 32.71790060335603 19.16415919004497 45 17.266076948976156 32.114544572075715 31.884358530532285 18.73501994841584 46 18.503022402067863 31.579088738124494 32.354162931739374 17.563725928068266 47 17.2330950683968 30.927009474170124 33.66194446925721 18.17795098817587 48 18.10168038933611 28.86339317337538 34.30471634645716 18.73021009083135 49 18.180512081175404 28.88600575059077 34.257617221538915 18.675864946694908 50 17.629252429446574 30.692513300505535 33.65501077845359 18.023223491594305 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2589.0 1 4727.0 2 6865.0 3 29591.0 4 52317.0 5 36122.5 6 19928.0 7 19975.5 8 20023.0 9 20399.5 10 20776.0 11 20847.0 12 20918.0 13 20393.5 14 19869.0 15 18172.5 16 16476.0 17 16186.5 18 15897.0 19 16551.5 20 17206.0 21 18257.0 22 19308.0 23 21713.0 24 24118.0 25 27132.5 26 30147.0 27 35158.5 28 40170.0 29 48680.5 30 57191.0 31 61061.0 32 64931.0 33 77975.5 34 91020.0 35 94846.0 36 98672.0 37 97046.5 38 95421.0 39 99043.5 40 102666.0 41 104528.5 42 106391.0 43 109821.0 44 113251.0 45 110068.5 46 106886.0 47 98256.0 48 89626.0 49 81060.0 50 72494.0 51 63016.5 52 53539.0 53 48573.0 54 43607.0 55 40702.0 56 37797.0 57 35659.0 58 33521.0 59 30526.0 60 27531.0 61 25031.0 62 22531.0 63 19890.5 64 17250.0 65 15355.5 66 13461.0 67 11861.0 68 10261.0 69 8446.0 70 6631.0 71 5452.0 72 4273.0 73 3344.5 74 2416.0 75 1937.5 76 1459.0 77 1084.0 78 709.0 79 532.5 80 356.0 81 289.5 82 223.0 83 148.5 84 74.0 85 54.0 86 34.0 87 32.5 88 31.0 89 21.5 90 12.0 91 7.5 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1600879.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.425511267140276 #Duplication Level Percentage of deduplicated Percentage of total 1 78.09459847274404 19.855950933715494 2 7.30974383294785 3.717079483690494 3 2.8509457345189784 2.1746025868505336 4 1.6548449564403644 1.6830111634137896 5 1.134132376967766 1.4417947764511259 6 0.8579622401006043 1.3088477161475294 7 0.651846062689677 1.1601463587950187 8 0.550344781922926 1.1194237962874571 9 0.47557639522760814 1.0882595695720956 >10 5.217814904042896 28.552284887515032 >50 0.7152411900271116 12.629117169263775 >100 0.4805190496673017 21.922229292978788 >500 0.004946155925344171 0.833842020746418 >1k 0.0012365389813360427 0.4912128697738495 >5k 0.0 0.0 >10k+ 2.473077962672085E-4 2.022197374798643 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32160 2.0088963625608183 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCC 2050 0.12805464997666907 No Hit GAATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT 1761 0.1100020676141045 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05059720316151314 0.0 2 0.0 0.0 0.0 0.19501786206202967 0.0 3 0.0 0.0 0.0 0.2940884351659307 0.0 4 0.0 0.0 0.0 0.47467672447449183 0.0 5 0.0 0.0 0.0 0.9234926562219881 0.0 6 0.0 0.0 0.0 1.3342045213910607 0.0 7 0.0 0.0 0.0 1.6215466628021231 0.0 8 0.0 0.0 0.0 2.223153654960806 0.0 9 0.0 0.0 0.0 2.504186762397408 0.0 10 0.0 0.0 0.0 3.052635458395044 0.0 11 0.0 0.0 0.0 3.425618051083186 0.0 12 0.0 0.0 0.0 3.8106565205740095 0.0 13 6.246568291544833E-5 0.0 0.0 3.955327042206188 0.0 14 6.246568291544833E-5 0.0 0.0 4.017355465341228 0.0 15 6.246568291544833E-5 0.0 0.0 4.118300008932593 0.0 16 6.246568291544833E-5 0.0 0.0 4.2886439262430205 0.0 17 6.246568291544833E-5 0.0 0.0 4.481725352134671 0.0 18 6.246568291544833E-5 0.0 0.0 4.746642313379088 0.0 19 6.246568291544833E-5 0.0 0.0 4.8972470748882335 0.0 20 6.246568291544833E-5 0.0 0.0 5.062468806199594 0.0 21 6.246568291544833E-5 0.0 0.0 5.266106932503956 0.0 22 6.246568291544833E-5 0.0 0.0 5.490358734170415 0.0 23 6.246568291544833E-5 0.0 0.0 5.722918471664629 0.0 24 6.246568291544833E-5 0.0 0.0 5.908191687191849 0.0 25 6.246568291544833E-5 0.0 0.0 6.0742879380640264 0.0 26 6.246568291544833E-5 0.0 0.0 6.242570487838244 0.0 27 6.246568291544833E-5 0.0 0.0 6.425220144683014 0.0 28 6.246568291544833E-5 0.0 0.0 6.608869252454433 0.0 29 6.246568291544833E-5 0.0 0.0 6.834557764827948 0.0 30 6.246568291544833E-5 0.0 0.0 7.088668162927991 0.0 31 6.246568291544833E-5 0.0 0.0 7.305361616961681 0.0 32 6.246568291544833E-5 0.0 0.0 7.519556443678754 0.0 33 6.246568291544833E-5 0.0 0.0 7.722882241568538 0.0 34 6.246568291544833E-5 0.0 0.0 7.940200352431383 0.0 35 6.246568291544833E-5 0.0 0.0 8.203180877505421 0.0 36 6.246568291544833E-5 0.0 0.0 8.418687483563717 0.0 37 6.246568291544833E-5 0.0 0.0 8.640503123596474 0.0 38 6.246568291544833E-5 0.0 0.0 8.884306684015469 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGTA 40 8.3164196E-9 44.000004 22 CGCATCG 20 7.857409E-4 44.000004 21 GTTACGA 20 7.857409E-4 44.000004 30 TATTACG 80 0.0 44.000004 1 CACGTTA 40 8.3164196E-9 44.000004 23 ACGTAAG 30 2.5283425E-6 44.0 1 CCGAAAC 25 4.443626E-5 44.0 42 CGTTTTT 18200 0.0 42.1022 1 TCGATAG 85 0.0 41.411762 1 CGTTGAT 65 0.0 40.615383 25 TTTACGG 170 0.0 40.117645 2 GCTAGCG 55 7.8216544E-11 40.0 1 ACGGGAT 710 0.0 39.661972 5 TAGTCGG 50 1.3478711E-9 39.600002 2 ATGGGAC 820 0.0 38.634148 5 GTCGATT 40 4.1258863E-7 38.500004 35 CACGGGA 350 0.0 38.342857 4 GCCCTAC 1985 0.0 37.904278 26 ATAGCCG 35 7.2919993E-6 37.714287 1 AGCGGTA 70 0.0 37.714287 4 >>END_MODULE