##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546157_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1762702 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.865355006121284 31.0 31.0 34.0 30.0 34.0 2 32.22167048088673 33.0 31.0 34.0 30.0 34.0 3 32.14074415301055 33.0 31.0 34.0 30.0 34.0 4 35.88865673267518 37.0 35.0 37.0 35.0 37.0 5 35.871538127261445 37.0 35.0 37.0 35.0 37.0 6 35.925863248580875 37.0 35.0 37.0 35.0 37.0 7 36.16092396786297 37.0 35.0 37.0 35.0 37.0 8 36.075389373813614 37.0 35.0 37.0 35.0 37.0 9 37.8159694605214 39.0 38.0 39.0 35.0 39.0 10 37.45696323031346 39.0 37.0 39.0 35.0 39.0 11 37.277574428349205 39.0 37.0 39.0 34.0 39.0 12 36.81249297952802 39.0 35.0 39.0 33.0 39.0 13 36.59554990009656 39.0 35.0 39.0 33.0 39.0 14 37.77557068636673 40.0 35.0 41.0 33.0 41.0 15 37.94066836027871 40.0 35.0 41.0 33.0 41.0 16 38.04993753907354 40.0 35.0 41.0 34.0 41.0 17 37.97521021704179 40.0 35.0 41.0 34.0 41.0 18 37.78563534845935 39.0 36.0 41.0 34.0 41.0 19 37.55369313701352 39.0 36.0 41.0 34.0 41.0 20 37.29229274148438 38.0 35.0 41.0 34.0 41.0 21 37.20766981599839 38.0 35.0 41.0 33.0 41.0 22 37.09882952421907 38.0 35.0 41.0 33.0 41.0 23 37.04146758782823 38.0 35.0 41.0 33.0 41.0 24 36.993934312209326 38.0 35.0 41.0 33.0 41.0 25 36.97060705666642 38.0 35.0 41.0 33.0 41.0 26 36.91151538944189 38.0 35.0 41.0 33.0 41.0 27 36.845159873875446 38.0 35.0 41.0 33.0 41.0 28 36.7918530755624 38.0 35.0 41.0 33.0 41.0 29 36.71391250477959 38.0 35.0 41.0 32.0 41.0 30 36.5319146401377 38.0 35.0 41.0 32.0 41.0 31 36.24599450162307 38.0 35.0 41.0 31.0 41.0 32 35.874944829018176 38.0 35.0 41.0 30.0 41.0 33 35.41305280189164 38.0 35.0 41.0 26.0 41.0 34 34.90168729598083 38.0 35.0 41.0 23.0 41.0 35 34.63800063765741 38.0 35.0 41.0 21.0 41.0 36 34.449058320691755 38.0 34.0 41.0 18.0 41.0 37 34.39841674883219 38.0 34.0 41.0 18.0 41.0 38 34.382878104183234 38.0 34.0 41.0 18.0 41.0 39 34.317034303018886 38.0 34.0 41.0 18.0 41.0 40 34.17690681692084 38.0 34.0 40.0 18.0 41.0 41 34.07439544517451 38.0 34.0 40.0 17.0 41.0 42 34.02349574687043 38.0 34.0 40.0 16.0 41.0 43 33.89273399587678 38.0 34.0 40.0 15.0 41.0 44 33.761449751574574 38.0 34.0 40.0 15.0 41.0 45 33.711657444083 37.0 34.0 40.0 15.0 41.0 46 33.65300714471306 37.0 34.0 40.0 15.0 41.0 47 33.60589594837925 37.0 33.0 40.0 15.0 41.0 48 33.55213416675082 37.0 33.0 40.0 13.0 41.0 49 33.44568282103271 37.0 33.0 40.0 12.0 41.0 50 33.30901763315637 37.0 33.0 40.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 0.0 11 2.0 12 5.0 13 5.0 14 17.0 15 31.0 16 80.0 17 271.0 18 613.0 19 1370.0 20 2450.0 21 3984.0 22 6673.0 23 10401.0 24 16626.0 25 28050.0 26 44439.0 27 52525.0 28 46574.0 29 39152.0 30 38061.0 31 40874.0 32 48568.0 33 62899.0 34 111062.0 35 234394.0 36 97305.0 37 120244.0 38 206714.0 39 549310.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.039229546457655 23.6823354146078 31.02021782468052 20.258217214254024 2 33.25014664985913 26.413313197579626 29.60727337916449 10.72926677339675 3 23.34365082696905 24.317213005942016 41.88138437467025 10.457751792418685 4 21.571485140426457 26.3713321934167 40.501003572923835 11.556179093233004 5 20.07940082895464 30.394757593739612 39.120339115743896 10.405502461561852 6 17.52610480954807 38.011927143669205 35.325710188108935 9.136257858673787 7 78.13969689714995 5.165081789207705 15.162631006261979 1.532590307380374 8 79.96150228456086 3.672089780348579 14.709065968042246 1.6573419670483158 9 75.22542097302892 5.9271504769382455 16.28800557326196 2.559422976770889 10 37.899713054163435 33.36894154542288 22.21135506739086 6.519990333022825 11 33.758060069143845 20.351766776233305 35.56477498749079 10.32539816713205 12 33.555757013947904 20.72636214175737 33.67284997691045 12.045030867384277 13 16.947504456226863 37.936815184869594 32.21860530027197 12.897075058631577 14 11.490371032653279 38.684984756357 34.41506278429366 15.409581426696061 15 10.433470887308234 26.716143738419767 50.19906938325367 12.651315991018333 16 11.329878788360142 23.20579428627187 46.748117378887635 18.716209546480346 17 12.142551605433024 25.725732426694925 35.2614338668703 26.87028210100176 18 14.63140111034083 28.53828951235092 40.73172890255982 16.098580474748424 19 18.151621771575684 28.273638992864363 33.76628607671631 19.80845315884364 20 20.66066754335106 24.832104348891644 39.28151213307751 15.225715974679781 21 16.10629590254053 29.842480464650293 37.69457344463216 16.356650188177017 22 19.511976499714642 26.279030715344966 32.04098026779342 22.16801251714697 23 14.021144810637306 30.17883907773407 33.61186405870079 22.188152052927833 24 12.52968454111926 26.568869837329284 48.55596691896872 12.345478702582739 25 11.334303813123261 32.419319885040125 41.22086433214463 15.025511969691985 26 13.059779815306275 32.14962029883667 35.979592693489884 18.811007192367175 27 12.553114479929109 36.53096212519189 34.064918517140164 16.851004877738834 28 10.192023382284697 31.971257762230938 41.890120962023076 15.94659789346129 29 12.03209617961516 24.823197568278697 39.49987008581144 23.6448361662947 30 13.162179426811793 35.38476724937057 35.40848084361395 16.044572480203687 31 18.247837694630174 34.68771238700586 31.802936627972283 15.261513290391681 32 20.221966049848472 28.431805262602527 33.051701308559245 18.294527378989756 33 19.910455652742208 33.46186706544839 29.460396595680947 17.167280686128457 34 15.412588174291514 28.16942398658423 34.6429515595943 21.77503627952995 35 18.218791378236364 28.041211730627186 33.849283656568154 19.890713234568295 36 23.72811740158007 31.085231650046346 30.340295750501216 14.846355197872358 37 15.106353768248972 33.76940628648518 36.399232541859035 14.725007403406815 38 15.291921152866452 31.375978469417976 35.78472141065251 17.547378967063064 39 16.48559994826125 32.371382116773 35.00915072428578 16.133867210679966 40 18.899791343063093 28.543508772327936 32.34477523710758 20.21192464750139 41 14.471192521481226 29.282374445595455 33.917871540396504 22.328561492526813 42 16.23501873827794 28.38426461194235 31.747907473866828 23.63280917591289 43 17.396928125117007 30.33893420442026 30.916173011660508 21.347964658802226 44 16.062953352296645 31.487568516969972 30.365654546259098 22.083823584474292 45 15.324654989896194 39.25042349756227 26.380692822723294 19.044228689818247 46 18.668215047126512 36.085452901284505 29.058740501797807 16.187591549791172 47 16.454568043832708 30.99758212108456 33.13702486296606 19.41082497211667 48 16.968721882655153 28.118252546374826 35.852231403833436 19.06079416713659 49 18.400898166564737 30.66230139864821 32.94385551272988 17.99294492205716 50 16.793139169298044 32.477923097608105 32.05459572860302 18.674342004490832 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4747.0 1 5516.5 2 6286.0 3 20947.5 4 35609.0 5 27293.0 6 18977.0 7 20511.5 8 22046.0 9 24196.0 10 26346.0 11 26382.5 12 26419.0 13 25484.5 14 24550.0 15 22451.5 16 20353.0 17 19075.5 18 17798.0 19 16175.0 20 14552.0 21 14549.0 22 14546.0 23 15411.5 24 16277.0 25 21832.5 26 27388.0 27 30837.0 28 34286.0 29 41994.0 30 49702.0 31 64617.5 32 79533.0 33 102815.5 34 126098.0 35 126541.5 36 126985.0 37 123714.5 38 120444.0 39 130373.0 40 140302.0 41 148735.5 42 157169.0 43 159435.5 44 161702.0 45 141476.5 46 121251.0 47 112898.5 48 104546.0 49 98077.5 50 91609.0 51 81283.5 52 70958.0 53 56202.0 54 41446.0 55 31983.0 56 22520.0 57 18094.0 58 13668.0 59 11274.5 60 8881.0 61 7480.0 62 6079.0 63 4970.5 64 3862.0 65 3193.0 66 2524.0 67 1917.0 68 1310.0 69 1028.5 70 747.0 71 651.5 72 556.0 73 405.5 74 255.0 75 237.0 76 219.0 77 140.5 78 62.0 79 55.0 80 48.0 81 31.5 82 15.0 83 18.5 84 22.0 85 13.5 86 5.0 87 4.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1762702.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.326766130552496 #Duplication Level Percentage of deduplicated Percentage of total 1 78.38983354450136 17.501914805610213 2 8.9857325074364 4.012446964104711 3 3.3352407775779733 2.233954224901964 4 1.7505066810438852 1.5633261311054591 5 1.0324309494974548 1.1525422177686964 6 0.7264918562712122 0.9732128262430988 7 0.5488543441135252 0.8577899806532322 8 0.4305175819422911 0.7689652293693203 9 0.3505488319861218 0.7043959610183234 >10 3.044360082119524 14.70412354325886 >50 0.7050453402810568 11.099421759522583 >100 0.6145444371559184 27.591058836017694 >500 0.06902121380887472 10.731666753347971 >1k 0.016616218139173543 4.760897218661694 >5k 0.0 0.0 >10k+ 2.5563412521805454E-4 1.3442835484162186 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23553 1.336187285201923 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3976 0.2255628007456734 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 3088 0.17518559575016082 No Hit GAAGAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1928 0.10937753517043719 No Hit TGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 1899 0.10773233365594412 No Hit TAGTATGGGGTCTATTTAAGAAGCAAAACTCAAAGCTTAAAAATTTCTCT 1764 0.10007363695054523 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.67310867066583E-5 0.0 0.0 0.06558113623289699 0.0 2 5.67310867066583E-5 0.0 0.0 0.2713447877179467 0.0 3 5.67310867066583E-5 0.0 0.0 0.3919550780563022 0.0 4 5.67310867066583E-5 0.0 0.0 0.6334025830798399 0.0 5 5.67310867066583E-5 0.0 0.0 1.151073749278097 0.0 6 5.67310867066583E-5 0.0 0.0 1.5686712785258086 0.0 7 5.67310867066583E-5 0.0 0.0 1.8669066013427114 0.0 8 5.67310867066583E-5 0.0 0.0 2.569123992597728 0.0 9 5.67310867066583E-5 0.0 0.0 2.82730716819973 0.0 10 5.67310867066583E-5 0.0 0.0 3.361997660409984 0.0 11 5.67310867066583E-5 0.0 0.0 3.857316778445818 0.0 12 5.67310867066583E-5 0.0 0.0 4.316271269902684 0.0 13 5.67310867066583E-5 0.0 0.0 4.465417296854488 0.0 14 5.67310867066583E-5 0.0 0.0 4.518744518358747 0.0 15 5.67310867066583E-5 0.0 0.0 4.608379635355267 0.0 16 5.67310867066583E-5 0.0 0.0 4.815561564007983 0.0 17 5.67310867066583E-5 0.0 0.0 5.092976578003542 0.0 18 5.67310867066583E-5 0.0 0.0 5.4679690611345535 0.0 19 5.67310867066583E-5 0.0 0.0 5.6659038226540845 0.0 20 5.67310867066583E-5 0.0 0.0 5.851754862705097 0.0 21 5.67310867066583E-5 0.0 0.0 6.140289169695161 0.0 22 5.67310867066583E-5 0.0 0.0 6.428880207771932 0.0 23 5.67310867066583E-5 0.0 0.0 6.769890769965655 0.0 24 5.67310867066583E-5 0.0 0.0 7.0223441058102845 0.0 25 5.67310867066583E-5 0.0 0.0 7.239737630070199 0.0 26 5.67310867066583E-5 0.0 0.0 7.472902396434565 0.0 27 5.67310867066583E-5 0.0 0.0 7.687118979838907 0.0 28 5.67310867066583E-5 0.0 0.0 7.924368384446152 0.0 29 5.67310867066583E-5 0.0 0.0 8.187430433504925 0.0 30 5.67310867066583E-5 0.0 0.0 8.567528714439536 0.0 31 5.67310867066583E-5 0.0 0.0 8.913871998783685 0.0 32 5.67310867066583E-5 0.0 0.0 9.20121495295291 0.0 33 5.67310867066583E-5 0.0 0.0 9.467056825260311 0.0 34 5.67310867066583E-5 0.0 0.0 9.768185433499253 0.0 35 5.67310867066583E-5 0.0 0.0 10.186350273614032 0.0 36 1.134621734133166E-4 0.0 0.0 10.525715634293261 0.0 37 1.134621734133166E-4 0.0 0.0 10.847664551353548 0.0 38 1.134621734133166E-4 0.0 0.0 11.162749006922327 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGCG 20 7.8576274E-4 44.0 1 AACCGCA 20 7.8576274E-4 44.0 43 CGGCGAA 20 7.8576274E-4 44.0 31 ATCTCGA 25 4.4438104E-5 44.0 34 CCTAGCG 20 7.8576274E-4 44.0 1 CCGGATG 20 7.8576274E-4 44.0 1 CCGGATC 25 4.4438104E-5 44.0 39 GATCCGG 145 0.0 44.0 2 GCCGGAT 20 7.8576274E-4 44.0 19 CGTCTGG 50 2.7284841E-11 44.0 2 GTTAGCG 160 0.0 44.0 1 TTCCGTA 20 7.8576274E-4 44.0 42 CACTGCG 55 1.8189894E-12 44.0 1 TACGGAC 30 2.5284899E-6 44.0 17 TCGATAG 30 2.5284899E-6 44.0 1 TGGCCGG 20 7.8576274E-4 44.0 11 ACGATGA 20 7.8576274E-4 44.0 30 GTAGCGC 20 7.8576274E-4 44.0 9 ACCTACG 20 7.8576274E-4 44.0 35 TACGATC 20 7.8576274E-4 44.0 18 >>END_MODULE