##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546156_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1813268 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.802805762854693 31.0 31.0 34.0 30.0 34.0 2 32.19483882139871 33.0 31.0 34.0 30.0 34.0 3 32.23122064692037 33.0 31.0 34.0 30.0 34.0 4 35.93178614523612 37.0 35.0 37.0 35.0 37.0 5 35.834592018388896 37.0 35.0 37.0 35.0 37.0 6 35.911542033499735 37.0 35.0 37.0 35.0 37.0 7 36.14418607729249 37.0 35.0 37.0 35.0 37.0 8 36.05220298378397 37.0 35.0 37.0 35.0 37.0 9 37.78865120875679 39.0 38.0 39.0 35.0 39.0 10 37.45847497446599 39.0 37.0 39.0 35.0 39.0 11 37.27459426846997 39.0 37.0 39.0 34.0 39.0 12 36.80110386330096 39.0 35.0 39.0 33.0 39.0 13 36.54747726204841 39.0 35.0 39.0 33.0 39.0 14 37.71598241407227 40.0 35.0 41.0 33.0 41.0 15 37.918878511064 40.0 35.0 41.0 33.0 41.0 16 38.01716900094195 40.0 35.0 41.0 34.0 41.0 17 37.94776227231716 40.0 35.0 41.0 34.0 41.0 18 37.77212745165083 39.0 36.0 41.0 34.0 41.0 19 37.55133824674566 39.0 36.0 41.0 34.0 41.0 20 37.28598420090135 38.0 35.0 41.0 34.0 41.0 21 37.19397022392719 38.0 35.0 41.0 33.0 41.0 22 37.09477253224565 38.0 35.0 41.0 33.0 41.0 23 37.026049100298465 38.0 35.0 41.0 33.0 41.0 24 36.98360639464216 38.0 35.0 41.0 33.0 41.0 25 36.946829701952495 38.0 35.0 41.0 33.0 41.0 26 36.90465998407296 38.0 35.0 41.0 33.0 41.0 27 36.82918520593757 38.0 35.0 41.0 33.0 41.0 28 36.76921778799383 38.0 35.0 41.0 33.0 41.0 29 36.69206261843257 38.0 35.0 41.0 32.0 41.0 30 36.51584487235202 38.0 35.0 41.0 32.0 41.0 31 36.23618185508154 38.0 35.0 41.0 31.0 41.0 32 35.87008208383978 38.0 35.0 41.0 30.0 41.0 33 35.38929656289087 38.0 35.0 41.0 26.0 41.0 34 34.9439542307039 38.0 35.0 41.0 23.0 41.0 35 34.64594257440158 38.0 35.0 41.0 21.0 41.0 36 34.441434470800786 38.0 34.0 41.0 18.0 41.0 37 34.342658117829245 38.0 34.0 40.0 18.0 41.0 38 34.33988026039174 38.0 34.0 41.0 18.0 41.0 39 34.27666290917835 38.0 34.0 41.0 18.0 41.0 40 34.15404286625033 38.0 34.0 40.0 18.0 41.0 41 34.08200607963081 38.0 34.0 40.0 17.0 41.0 42 34.01364497691461 38.0 34.0 40.0 15.0 41.0 43 33.915144920662584 38.0 34.0 40.0 15.0 41.0 44 33.79087040636023 38.0 34.0 40.0 15.0 41.0 45 33.73151790027729 38.0 34.0 40.0 15.0 41.0 46 33.67311120033001 37.0 34.0 40.0 15.0 41.0 47 33.608039186705994 37.0 33.0 40.0 15.0 41.0 48 33.56101028640003 37.0 33.0 40.0 13.0 41.0 49 33.45526971192344 37.0 33.0 40.0 12.0 41.0 50 33.29018710968263 37.0 33.0 40.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 4.0 13 14.0 14 13.0 15 30.0 16 98.0 17 271.0 18 660.0 19 1350.0 20 2592.0 21 4352.0 22 6927.0 23 10654.0 24 16989.0 25 28662.0 26 45253.0 27 53875.0 28 48222.0 29 40670.0 30 39439.0 31 42363.0 32 50465.0 33 65515.0 34 117294.0 35 236584.0 36 100684.0 37 124520.0 38 215301.0 39 560463.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.187782500987165 23.716957449202212 31.04124707434312 20.054012975467497 2 33.41739886216489 26.380104871425512 29.50904113457029 10.69345513183931 3 23.348120630816847 24.28532351533254 41.90969012854139 10.456865725309221 4 21.643077581471683 26.40017912410079 40.36347633113252 11.593266963295001 5 20.12708546116735 30.396775324993325 39.08048892938054 10.395650284458778 6 17.471989799632485 37.97353728185795 35.344637417083405 9.209835501426154 7 78.18458165036829 5.118382941738342 15.153303317546 1.5437320903473728 8 79.90969895238874 3.6996185891991695 14.70284591136004 1.6878365470520629 9 75.11735716948625 5.94048976764604 16.328088291416382 2.614064771451324 10 37.837980927253994 33.33417895203577 22.215634975083663 6.612205145626571 11 33.6560839324358 20.406856570567616 35.59264267609642 10.344416820900165 12 33.46085631026412 20.663961422139472 33.721876744088576 12.153305523507832 13 17.01110922378821 37.775331611212465 32.35644151884884 12.857117646150487 14 11.641191484104942 38.588007950286446 34.37230459038598 15.398495975222637 15 10.501812197645357 26.646419613647844 50.143332370063334 12.708435818643466 16 11.447177140941108 23.176110756931685 46.762144371378085 18.614567730749123 17 12.199189529622759 25.696532448595576 35.25573715523574 26.848540866545928 18 14.68321285105125 28.483710074848283 40.75784715772848 16.075229916371985 19 18.20387278659305 28.222469044840587 33.78662172387094 19.78703644469543 20 20.699091364321216 24.824681183366167 39.23192820917812 15.244299243134495 21 16.116701998822016 29.788812243970554 37.69597213429014 16.398513622917296 22 19.486474145024342 26.332511244890437 32.02174195982061 22.159272650264604 23 14.061076465254999 30.104044189827427 33.683603306295595 22.15127603862198 24 12.658360485046888 26.488307299307106 48.39615544971841 12.457176765927596 25 11.398370235398188 32.245371340585066 41.226834643307 15.129423780709747 26 13.07208862672258 32.1299443877022 35.97818965536258 18.819777330212634 27 12.622623903361225 36.33516942889854 34.14944729626288 16.892759371477357 28 10.286069130431905 31.937584515912704 41.84737170677473 15.92897464688066 29 12.11216433533267 24.789606390230237 39.49394132582718 23.604287948609915 30 13.262297685725441 35.2683111376807 35.332504627004944 16.13688654958892 31 18.281026301682928 34.5431563343091 31.80230390653781 15.373513457470159 32 20.19806228312638 28.440528371978107 33.03929700408324 18.32211234081228 33 19.912996865328235 33.41298693849999 29.430233148106073 17.2437830480657 34 15.431254508434494 28.212707663732 34.53543546789554 21.82060235993797 35 18.22686993869632 27.991835735258107 33.75678609008707 20.024508235958503 36 23.800894296926874 30.999995588076334 30.242523443859376 14.956586671137417 37 15.135655622886413 33.68376875343303 36.307484607901316 14.873091015779243 38 15.347427958801457 31.410966277461466 35.617625193848895 17.62398056988818 39 16.581884200239568 32.27399369536108 34.99874260175551 16.145379502643845 40 18.940167697218502 28.59345667601259 32.25077594707456 20.215599679694343 41 14.50392330311901 29.271459045215597 33.86526426319772 22.359353388467675 42 16.392171482649008 28.36640805440784 31.70011272464964 23.54130773829351 43 17.5158332910524 30.26386612458831 30.90122364702846 21.31907693733083 44 16.10010213603284 31.462861529569814 30.34090934158657 22.09612699281077 45 15.357354787047475 39.02192064272904 26.440437927542977 19.180286642680507 46 18.822093590136703 35.91145930993102 28.99549321997631 16.270953879955968 47 16.477983397931247 30.82511796380899 33.13216799722931 19.564730641030447 48 16.99279974057889 28.138146153795248 35.76597612708105 19.103077978544817 49 18.487945521566587 30.52747856356589 32.880081708826275 18.104494206041245 50 16.9116754941906 32.30195426158737 32.04749656421445 18.73887368000759 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4722.0 1 5570.5 2 6419.0 3 21739.5 4 37060.0 5 28066.5 6 19073.0 7 20753.5 8 22434.0 9 24434.0 10 26434.0 11 26730.0 12 27026.0 13 26120.0 14 25214.0 15 23021.0 16 20828.0 17 19634.0 18 18440.0 19 16766.5 20 15093.0 21 15043.0 22 14993.0 23 15753.0 24 16513.0 25 22277.5 26 28042.0 27 31450.5 28 34859.0 29 42796.5 30 50734.0 31 66089.0 32 81444.0 33 104959.5 34 128475.0 35 129428.0 36 130381.0 37 126675.0 38 122969.0 39 133485.5 40 144002.0 41 151754.0 42 159506.0 43 163296.5 44 167087.0 45 146196.0 46 125305.0 47 117077.0 48 108849.0 49 102419.0 50 95989.0 51 85221.0 52 74453.0 53 59006.0 54 43559.0 55 33578.0 56 23597.0 57 18901.5 58 14206.0 59 11751.0 60 9296.0 61 7845.5 62 6395.0 63 5137.0 64 3879.0 65 3265.0 66 2651.0 67 2016.0 68 1381.0 69 1063.0 70 745.0 71 664.5 72 584.0 73 417.5 74 251.0 75 222.0 76 193.0 77 135.5 78 78.0 79 68.5 80 59.0 81 42.0 82 25.0 83 20.5 84 16.0 85 11.0 86 6.0 87 3.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1813268.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.43172857009789 #Duplication Level Percentage of deduplicated Percentage of total 1 78.2080333421458 17.5434137593218 2 9.06811004438987 4.068267663190637 3 3.42918568976988 2.3076768782814554 4 1.7401064988498112 1.5613438666104924 5 1.0968821118055443 1.2302480902708868 6 0.7473418520401854 1.0058501744423818 7 0.5579343256555076 0.8760801947131464 8 0.4173574829405921 0.7489639819218098 9 0.339799294485675 0.6860056987992078 >10 3.0042180347492455 14.545567346739263 >50 0.7008356977884475 11.090586657025835 >100 0.6039211722493076 27.331105635911733 >500 0.06847571208327789 10.597987275713013 >1k 0.017551536310154263 5.057193903053863 >5k 0.0 0.0 >10k+ 2.4720473676273605E-4 1.349708874004441 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24340 1.3423277750448361 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3949 0.2177835819084658 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 3053 0.16837003686162222 No Hit TGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 1980 0.10919511070619456 No Hit GAAGAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1961 0.10814727883578158 No Hit AAGAATGGGATGCTACTACCACTAACCTGACTATCAAGCCCTAAAAAAAC 1881 0.10373535517088484 No Hit TAGTATGGGGTCTATTTAAGAAGCAAAACTCAAAGCTTAAAAATTTCTCT 1877 0.10351475898764001 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06518617214884947 0.0 2 0.0 0.0 0.0 0.27673791188064867 0.0 3 0.0 0.0 0.0 0.3975694712530084 0.0 4 0.0 0.0 0.0 0.6408319123262529 0.0 5 0.0 0.0 0.0 1.169766410701562 0.0 6 0.0 0.0 0.0 1.5971163666926236 0.0 7 0.0 0.0 0.0 1.898064709684393 0.0 8 0.0 0.0 0.0 2.6249842825219436 0.0 9 0.0 0.0 0.0 2.9006192134863684 0.0 10 0.0 0.0 0.0 3.447366853658698 0.0 11 0.0 0.0 0.0 3.9618523020314704 0.0 12 0.0 0.0 0.0 4.438064312611263 0.0 13 0.0 0.0 0.0 4.598106843555393 0.0 14 0.0 0.0 0.0 4.64994694661793 0.0 15 0.0 0.0 0.0 4.745520243008755 0.0 16 0.0 0.0 0.0 4.962642036367487 0.0 17 0.0 0.0 0.0 5.242027102447073 0.0 18 0.0 0.0 0.0 5.640589256524684 0.0 19 0.0 0.0 0.0 5.8396773119031495 0.0 20 0.0 0.0 0.0 6.037882982548636 0.0 21 0.0 0.0 0.0 6.34131303260191 0.0 22 0.0 0.0 0.0 6.639448774257308 0.0 23 0.0 0.0 0.0 7.001116216687219 0.0 24 0.0 0.0 0.0 7.268809685054829 0.0 25 0.0 0.0 0.0 7.486207223642617 0.0 26 0.0 0.0 0.0 7.7321168189147995 0.0 27 0.0 0.0 0.0 7.9597720800234715 0.0 28 0.0 0.0 0.0 8.20921121422757 0.0 29 0.0 0.0 0.0 8.478504004923707 0.0 30 0.0 0.0 0.0 8.866146647930698 0.0 31 5.5149045811209376E-5 0.0 0.0 9.244027909829104 0.0 32 5.5149045811209376E-5 0.0 0.0 9.541115819614088 0.0 33 5.5149045811209376E-5 0.0 0.0 9.82116267424341 0.0 34 5.5149045811209376E-5 0.0 0.0 10.129114946053203 0.0 35 5.5149045811209376E-5 0.0 0.0 10.565564494603114 0.0 36 5.5149045811209376E-5 0.0 0.0 10.89960226508161 0.0 37 5.5149045811209376E-5 0.0 0.0 11.234467271247272 0.0 38 5.5149045811209376E-5 0.0 0.0 11.558412766342316 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGGGC 60 0.0 44.000004 4 TCCGATA 30 2.528528E-6 44.000004 16 GCCGGAG 30 2.528528E-6 44.000004 1 CCGTACT 30 2.528528E-6 44.000004 34 TTACGCG 65 0.0 44.000004 1 GATCTCG 60 0.0 44.000004 9 CACGTAA 30 2.528528E-6 44.000004 36 CGCGTGG 30 2.528528E-6 44.000004 3 CCGTTTA 65 0.0 44.000004 31 AATCGTC 30 2.528528E-6 44.000004 39 ACGCGAG 20 7.8576873E-4 44.0 1 GTGTTCG 20 7.8576873E-4 44.0 21 CGTGGAT 45 4.802132E-10 44.0 21 CTCCGTA 70 0.0 44.0 32 CACGGTA 25 4.443861E-5 44.0 4 CTTCCGT 25 4.443861E-5 44.0 11 ACGTTAG 100 0.0 44.0 1 CGTGCCG 20 7.8576873E-4 44.0 41 AGCTTCG 20 7.8576873E-4 44.0 1 TAGAACG 25 4.443861E-5 44.0 2 >>END_MODULE