##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546155_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1629308 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.860254783012174 31.0 31.0 34.0 30.0 34.0 2 32.235103491789154 33.0 31.0 34.0 30.0 34.0 3 32.135697486294795 33.0 31.0 34.0 30.0 34.0 4 35.89487131960317 37.0 35.0 37.0 35.0 37.0 5 35.88334311253612 37.0 35.0 37.0 35.0 37.0 6 35.920084477581895 37.0 35.0 37.0 35.0 37.0 7 36.13391943082585 37.0 35.0 37.0 35.0 37.0 8 36.01919342444768 37.0 35.0 37.0 35.0 37.0 9 37.751982436715465 39.0 38.0 39.0 35.0 39.0 10 37.47786360835398 39.0 37.0 39.0 35.0 39.0 11 37.3740538928183 39.0 37.0 39.0 34.0 39.0 12 36.92977263967279 39.0 35.0 39.0 33.0 39.0 13 36.78143665899879 39.0 35.0 39.0 33.0 39.0 14 37.96915561698586 40.0 36.0 41.0 33.0 41.0 15 38.10706938160249 40.0 36.0 41.0 33.0 41.0 16 38.178774669982595 40.0 36.0 41.0 34.0 41.0 17 38.065873364643146 40.0 36.0 41.0 34.0 41.0 18 37.86826370459115 39.0 36.0 41.0 34.0 41.0 19 37.66916629636631 39.0 36.0 41.0 34.0 41.0 20 37.3480041833711 39.0 35.0 41.0 33.0 41.0 21 37.27429743179313 39.0 35.0 41.0 33.0 41.0 22 37.20687739825742 39.0 35.0 41.0 33.0 41.0 23 37.137333763781925 39.0 35.0 41.0 33.0 41.0 24 37.06945341212343 38.0 35.0 41.0 33.0 41.0 25 37.0508933854127 38.0 35.0 41.0 33.0 41.0 26 36.975152641489515 38.0 35.0 41.0 33.0 41.0 27 36.9200421283146 38.0 35.0 41.0 33.0 41.0 28 36.85306522769176 38.0 35.0 41.0 33.0 41.0 29 36.78046078457848 38.0 35.0 41.0 32.0 41.0 30 36.607844557321265 38.0 35.0 41.0 32.0 41.0 31 36.33402462886084 38.0 35.0 41.0 31.0 41.0 32 36.01695136831096 38.0 35.0 41.0 30.0 41.0 33 35.62345486550118 38.0 35.0 41.0 27.0 41.0 34 35.13711158356799 38.0 35.0 41.0 23.0 41.0 35 34.88407593898759 38.0 35.0 41.0 22.0 41.0 36 34.707152975373596 38.0 35.0 41.0 21.0 41.0 37 34.65088184677176 38.0 34.0 41.0 21.0 41.0 38 34.57697930655223 38.0 34.0 41.0 20.0 41.0 39 34.520375521386995 38.0 34.0 41.0 19.0 41.0 40 34.388842993467165 38.0 34.0 40.0 18.0 41.0 41 34.265338413608724 38.0 34.0 40.0 18.0 41.0 42 34.176265629334665 38.0 34.0 40.0 18.0 41.0 43 34.03455945714377 38.0 34.0 40.0 17.0 41.0 44 33.88664512787024 38.0 34.0 40.0 15.0 41.0 45 33.8239491857893 37.0 34.0 40.0 17.0 41.0 46 33.76042773987484 37.0 34.0 40.0 15.0 41.0 47 33.714117281692594 37.0 33.0 40.0 15.0 41.0 48 33.65277651616515 37.0 33.0 40.0 15.0 41.0 49 33.5622656980755 37.0 33.0 40.0 15.0 41.0 50 33.39644867637058 37.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 4.0 12 0.0 13 7.0 14 16.0 15 35.0 16 109.0 17 229.0 18 559.0 19 1198.0 20 2185.0 21 3734.0 22 5852.0 23 8935.0 24 14048.0 25 23254.0 26 36797.0 27 44571.0 28 42717.0 29 37675.0 30 37088.0 31 39443.0 32 45847.0 33 57590.0 34 101101.0 35 196384.0 36 99366.0 37 119662.0 38 200747.0 39 510152.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.988579200494932 23.80483002599877 29.346139588095067 20.86045118541123 2 35.56718557817184 25.00552381747343 28.819474279878328 10.607816324476403 3 24.27042646325925 24.24219361839505 40.18251920447209 11.30486071387362 4 22.369926373650653 26.056460779668424 39.20633790541751 12.367274941263409 5 20.306903298823794 29.07989158587572 37.90455825417908 12.708646861121409 6 18.68578562187137 36.769904769386756 35.395333478998445 9.148976129743424 7 75.73700000245503 5.307590707220489 16.6957383134435 2.2596709768809826 8 75.93720769799202 4.724152830526824 16.422125221259577 2.9165142502215664 9 70.56658409582474 6.290707465991698 19.006535289828566 4.136173148355008 10 36.28178343198462 28.75527524568713 24.30430587709629 10.658635445231964 11 31.32421862533051 21.61169036179777 33.6853437164735 13.378747296398224 12 29.22989391815421 20.37944943497485 37.352360634085144 13.038296012785796 13 16.51124280983092 34.22330216263592 34.89604175515004 14.369413272383122 14 11.54048221699028 35.62678143113518 38.00147056296292 14.831265788911614 15 10.912546921760649 24.47112516479389 51.087701036268165 13.528626877177304 16 13.769158440270349 21.932992411502305 45.5944486861907 18.703400462036644 17 13.06517859115649 22.731061284913594 37.61719699406128 26.58656312986863 18 15.919150952428884 25.40845561428533 42.39922715655972 16.27316627672607 19 20.762188610133872 25.96335376736627 35.1175468358346 18.156910786665257 20 22.66066330000221 23.45916180366143 37.651015032148614 16.229159864187743 21 16.98334507656011 28.004772578297043 37.489228555926815 17.522653789216037 22 17.77466261750387 25.013379913435642 34.46113319274195 22.750824276318536 23 14.416918102654625 28.812538820161688 35.02014352105311 21.750399556130578 24 14.080149364024482 23.82091047242142 46.821472674288714 15.277467489265382 25 13.387033022608371 28.44575733992591 41.56212330633618 16.605086331129534 26 14.571278113162153 30.488587793099892 36.61591301337746 18.3242210803605 27 13.342719731321518 32.10301551333449 35.68521114485414 18.869053610489853 28 12.327994461452347 28.52419554804862 41.72691719429353 17.420892796205507 29 13.81101670156901 24.960903647438055 39.90675796104849 21.32132168994444 30 14.477434591863538 31.14481730894343 37.86975820409646 16.50798989509657 31 18.111185853135193 31.812708217230874 34.137621616048044 15.93848431358589 32 19.72604320361773 27.155209450883444 34.94581748816062 18.172929857338207 33 19.645702347254172 29.010721115958432 33.21809013397098 18.12548640281641 34 15.176136126502785 27.343939881225648 36.40502593739183 21.07489805487974 35 16.997522874741914 27.55065340623136 36.085565160178426 19.366258558848294 36 20.545961843923923 29.363508925261524 33.520672580015564 16.56985665079899 37 16.64405993219207 31.957923241032386 35.83601136187878 15.562005464896753 38 15.6023907082025 29.181959457634775 36.62941567831251 18.586234155850214 39 16.891465579252053 31.203983531658842 34.35194573401714 17.55260515507197 40 18.306728991694634 27.375241513575087 34.04009554976714 20.277933944963138 41 15.037120053421452 28.768225528874837 33.332371779921296 22.86228263778242 42 17.274818511908123 28.490929891708628 31.926191978435014 22.308059617948235 43 17.087499723809128 28.211486103302754 33.80079150166819 20.90022267121993 44 15.813646038686363 28.119422478745577 34.97932864749943 21.08760283506863 45 15.817267207918945 35.29676402497257 29.371549148472848 19.514419618635642 46 19.387003562248513 31.74623828030059 31.65442015874224 17.212337998708655 47 17.023177938118515 29.924483277563237 33.190593798103244 19.861744986215008 48 17.290898958330775 26.444846523800287 35.41847213663715 20.845782381231786 49 17.75631126834214 26.63725949912478 36.446577319941966 19.15985191259111 50 16.91933016961802 30.21227416792896 34.35077959477275 18.51761606768027 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4485.0 1 6410.0 2 8335.0 3 25703.5 4 43072.0 5 31144.5 6 19217.0 7 20531.0 8 21845.0 9 23158.5 10 24472.0 11 24441.5 12 24411.0 13 23173.0 14 21935.0 15 20083.5 16 18232.0 17 17178.0 18 16124.0 19 15549.0 20 14974.0 21 16676.0 22 18378.0 23 22826.0 24 27274.0 25 24649.5 26 22025.0 27 25148.0 28 28271.0 29 37223.5 30 46176.0 31 55977.0 32 65778.0 33 79150.0 34 92522.0 35 100556.5 36 108591.0 37 101219.5 38 93848.0 39 100273.0 40 106698.0 41 117259.0 42 127820.0 43 125623.0 44 123426.0 45 121462.5 46 119499.0 47 115867.0 48 112235.0 49 99977.5 50 87720.0 51 72559.0 52 57398.0 53 49233.5 54 41069.0 55 35380.5 56 29692.0 57 27867.5 58 26043.0 59 24248.5 60 22454.0 61 20744.0 62 19034.0 63 16216.5 64 13399.0 65 10753.5 66 8108.0 67 6620.5 68 5133.0 69 4556.5 70 3980.0 71 3187.0 72 2394.0 73 1893.0 74 1392.0 75 1110.5 76 829.0 77 646.0 78 463.0 79 389.0 80 315.0 81 242.0 82 169.0 83 104.5 84 40.0 85 27.0 86 14.0 87 11.0 88 8.0 89 7.0 90 6.0 91 5.0 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1629308.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.336348658280507 #Duplication Level Percentage of deduplicated Percentage of total 1 78.10826308691021 18.22761660488838 2 8.42406555547595 3.931738618455964 3 3.1986634784655665 2.239353785219423 4 1.7280293948892629 1.613035858035733 5 1.07328895579275 1.2523322641730712 6 0.7488398303382794 1.0485112421989022 7 0.5688357937259623 0.929218528818915 8 0.45731086913662083 0.8537572709914778 9 0.3887054819864069 0.8163869987717789 >10 4.048660906338426 21.182965717846898 >50 0.7129133599163143 11.467257847159344 >100 0.4735945634471479 23.13981830817307 >500 0.06194585121941027 9.71393223752606 >1k 0.006618146497800243 2.0615719354270334 >5k 0.0 0.0 >10k+ 2.647258599120097E-4 1.5225027823139623 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24645 1.5126053514743683 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3243 0.19904155629261014 No Hit GATAATCGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1646 0.10102448401407224 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.051617005501722206 0.0 2 0.0 0.0 0.0 0.288588775111888 0.0 3 0.0 0.0 0.0 0.4882440889015459 0.0 4 0.0 0.0 0.0 0.8247059487831644 0.0 5 0.0 0.0 0.0 1.487564045594817 0.0 6 0.0 0.0 0.0 2.1348940777311594 0.0 7 0.0 0.0 0.0 2.5491190124887377 0.0 8 0.0 0.0 0.0 3.4680367370687435 0.0 9 0.0 0.0 0.0 3.908837371448492 0.0 10 0.0 0.0 0.0 4.637183393195148 0.0 11 0.0 0.0 0.0 5.278375850361012 0.0 12 6.137574970478264E-5 0.0 0.0 5.852423237349845 0.0 13 6.137574970478264E-5 0.0 0.0 6.074296572532633 0.0 14 6.137574970478264E-5 0.0 0.0 6.160897755366082 0.0 15 6.137574970478264E-5 0.0 0.0 6.291996356735497 0.0 16 6.137574970478264E-5 0.0 0.0 6.560944891941855 0.0 17 6.137574970478264E-5 0.0 0.0 6.868682900961635 0.0 18 6.137574970478264E-5 0.0 0.0 7.317707885801825 0.0 19 6.137574970478264E-5 0.0 0.0 7.549769595435608 0.0 20 6.137574970478264E-5 0.0 0.0 7.829029256592369 0.0 21 6.137574970478264E-5 0.0 0.0 8.131734454136357 0.0 22 6.137574970478264E-5 0.0 0.0 8.432168748941269 0.0 23 6.137574970478264E-5 0.0 0.0 8.765070815340009 0.0 24 6.137574970478264E-5 0.0 0.0 9.015361122636113 0.0 25 6.137574970478264E-5 0.0 0.0 9.228580477110528 0.0 26 6.137574970478264E-5 0.0 0.0 9.468436906956818 0.0 27 6.137574970478264E-5 0.0 0.0 9.693501781124256 0.0 28 6.137574970478264E-5 0.0 0.0 9.931885192977632 0.0 29 6.137574970478264E-5 0.0 0.0 10.163640023862891 0.0 30 6.137574970478264E-5 0.0 0.0 10.490036260792925 0.0 31 6.137574970478264E-5 0.0 0.0 10.79090018584577 0.0 32 6.137574970478264E-5 0.0 0.0 11.050458231347296 0.0 33 6.137574970478264E-5 0.0 0.0 11.298784514652846 0.0 34 6.137574970478264E-5 0.0 0.0 11.559385947899354 0.0 35 6.137574970478264E-5 0.0 0.0 11.893699656541305 0.0 36 6.137574970478264E-5 0.0 0.0 12.169338148465483 0.0 37 6.137574970478264E-5 0.0 0.0 12.444362882892614 0.0 38 6.137574970478264E-5 0.0 0.0 12.690234136209973 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGGC 20 7.85745E-4 44.000004 38 TCGTTGC 20 7.85745E-4 44.000004 27 CGTGCCA 20 7.85745E-4 44.000004 18 GCACGTC 20 7.85745E-4 44.000004 25 GTTAGCG 60 0.0 44.000004 1 CGTTAGT 40 8.3164196E-9 44.000004 32 GTCCGTT 20 7.85745E-4 44.000004 10 TCGAGTA 30 2.5283698E-6 44.000004 10 ATACGAG 40 8.3164196E-9 44.000004 1 CAATACG 20 7.85745E-4 44.000004 1 ACCCACG 20 7.85745E-4 44.000004 38 AACGTAC 115 0.0 44.0 38 TTGGCGA 105 0.0 44.0 1 ACTTCGC 25 4.443661E-5 44.0 31 TGTATCG 25 4.443661E-5 44.0 1 ATGTACG 35 1.4465877E-7 44.0 1 ACTACGT 25 4.443661E-5 44.0 22 ATGCGTA 25 4.443661E-5 44.0 44 TTACGCA 75 0.0 44.0 14 TAGTGCG 200 0.0 44.0 1 >>END_MODULE