##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546154_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1663320 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.797969723204194 31.0 31.0 34.0 30.0 34.0 2 32.2101531876007 33.0 31.0 34.0 30.0 34.0 3 32.23344335425534 33.0 31.0 34.0 30.0 34.0 4 35.938314936392274 37.0 35.0 37.0 35.0 37.0 5 35.85313048601592 37.0 35.0 37.0 35.0 37.0 6 35.91377485991872 37.0 35.0 37.0 35.0 37.0 7 36.11366784503283 37.0 35.0 37.0 35.0 37.0 8 36.003060745977926 37.0 35.0 37.0 35.0 37.0 9 37.728869369694344 39.0 38.0 39.0 35.0 39.0 10 37.485292667676696 39.0 37.0 39.0 35.0 39.0 11 37.36917249837674 39.0 37.0 39.0 34.0 39.0 12 36.91555082605873 39.0 35.0 39.0 33.0 39.0 13 36.73527583387442 39.0 35.0 39.0 33.0 39.0 14 37.91566265060241 40.0 36.0 41.0 33.0 41.0 15 38.08090505735517 40.0 36.0 41.0 33.0 41.0 16 38.143946444460475 40.0 36.0 41.0 34.0 41.0 17 38.041850034870016 40.0 36.0 41.0 34.0 41.0 18 37.853367361662215 39.0 36.0 41.0 33.0 41.0 19 37.658155375995 39.0 36.0 41.0 34.0 41.0 20 37.335574032657576 39.0 35.0 41.0 33.0 41.0 21 37.26080970588943 39.0 35.0 41.0 33.0 41.0 22 37.20146574321237 39.0 35.0 41.0 33.0 41.0 23 37.12145047254888 39.0 35.0 41.0 33.0 41.0 24 37.054677392203544 38.0 35.0 41.0 33.0 41.0 25 37.02924151696607 38.0 35.0 41.0 33.0 41.0 26 36.9751172354087 38.0 35.0 41.0 33.0 41.0 27 36.90920328018662 38.0 35.0 41.0 33.0 41.0 28 36.83457121900777 38.0 35.0 41.0 33.0 41.0 29 36.7734013899911 38.0 35.0 41.0 32.0 41.0 30 36.59677933290046 38.0 35.0 41.0 32.0 41.0 31 36.327389197508595 38.0 35.0 41.0 31.0 41.0 32 36.01481975807421 38.0 35.0 41.0 30.0 41.0 33 35.60485955799245 38.0 35.0 41.0 27.0 41.0 34 35.19458973619027 38.0 35.0 41.0 24.0 41.0 35 34.90662770843854 38.0 35.0 41.0 22.0 41.0 36 34.72577014645408 38.0 35.0 41.0 21.0 41.0 37 34.60062585672029 38.0 34.0 41.0 21.0 41.0 38 34.53978067960465 38.0 34.0 41.0 20.0 41.0 39 34.48807745953875 38.0 34.0 41.0 19.0 41.0 40 34.3767982108073 38.0 34.0 41.0 18.0 41.0 41 34.27113784479234 38.0 34.0 40.0 18.0 41.0 42 34.16247805593632 38.0 34.0 40.0 18.0 41.0 43 34.05249500998004 38.0 34.0 40.0 17.0 41.0 44 33.89807733929731 38.0 34.0 40.0 15.0 41.0 45 33.83576942500541 38.0 34.0 40.0 17.0 41.0 46 33.78357141139408 37.0 34.0 40.0 16.0 41.0 47 33.720287737777454 37.0 33.0 40.0 15.0 41.0 48 33.676759733544955 37.0 33.0 40.0 15.0 41.0 49 33.57995875718443 37.0 33.0 40.0 15.0 41.0 50 33.38392432003463 37.0 33.0 40.0 14.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 4.0 12 3.0 13 4.0 14 11.0 15 31.0 16 93.0 17 224.0 18 577.0 19 1231.0 20 2195.0 21 3864.0 22 6158.0 23 9172.0 24 14329.0 25 23395.0 26 37075.0 27 45320.0 28 43868.0 29 39051.0 30 37870.0 31 40153.0 32 47508.0 33 60225.0 34 104817.0 35 197275.0 36 102153.0 37 122708.0 38 206576.0 39 517426.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.058906283817905 23.876884784647572 29.47875333670009 20.58545559483443 2 35.5779405045331 24.91565062645793 28.853437702907435 10.652971166101533 3 24.22804992424789 24.215725176153715 40.15174470336436 11.404480196234038 4 22.426652718659067 26.080369381718494 39.135343770290746 12.357634129331698 5 20.32825914436188 29.092116970877523 37.81437125748503 12.765252627275569 6 18.749248490969865 36.77831084818315 35.2790202727076 9.193420388139383 7 75.82623908808888 5.275172546473319 16.651696606786427 2.246891758651372 8 76.00058918307963 4.722302383185436 16.338106918692734 2.9390015150422046 9 70.59766010148378 6.2806315080682005 18.960332347353486 4.161376043094534 10 36.34946973522834 28.740230382608278 24.230334511699493 10.679965370463892 11 31.37466031791838 21.64508332732126 33.616141211552794 13.364115143207561 12 29.19883125315634 20.37659620518 37.323665921169706 13.100906620493951 13 16.59500276555323 34.12963230166174 34.84416708751172 14.431197845273308 14 11.536144578313252 35.61383257581223 38.01421253877786 14.83581030709665 15 10.970408580429503 24.395666498328644 51.04561960416516 13.58830531707669 16 13.885061202895413 21.911478248322634 45.49305004448934 18.710410504292618 17 13.070846259288652 22.701344299353103 37.623367722386554 26.604441718971692 18 16.01622057090638 25.319541639612343 42.339718154053344 16.32451963542794 19 20.785537359016907 25.932712887478054 35.162746795565496 18.119002957939543 20 22.72960103888608 23.368804559555585 37.55801649712623 16.3435779044321 21 16.975747300579563 27.991246422817017 37.40284491258447 17.63016136401895 22 17.760683452372366 25.006793641632395 34.42500541086502 22.807517495130224 23 14.47346271312796 28.7307313084674 34.99855710266215 21.797248875742493 24 14.119471899574346 23.765300723853496 46.74746891758652 15.367758458985643 25 13.42597936656807 28.380047134646368 41.498268523194575 16.695704975590985 26 14.56250150301806 30.41339008729529 36.63065435394272 18.393454055743934 27 13.30615876680374 32.05486617127191 35.74429454344323 18.89468051848111 28 12.300399201596807 28.527763749609214 41.676045499362715 17.495791549431257 29 13.817665873073132 24.959538753817668 39.861902700622856 21.360892672486354 30 14.491919774908016 31.02842507755573 37.93653656542337 16.543118582112886 31 18.107940745015995 31.757629319673907 34.12313926364139 16.01129067166871 32 19.69200153909049 27.09526729673184 34.98394776711637 18.2287833970613 33 19.680277998220426 28.992196330231103 33.1312675853113 18.19625808623716 34 15.165452228073972 27.39070052665753 36.21762499098189 21.226222254286608 35 17.00370343650049 27.550381165380085 36.02277372964914 19.42314166847029 36 20.484031936127746 29.320756078205036 33.53557944352259 16.659632542144625 37 16.608349565928386 31.84282038332973 35.90205131904865 15.646778731693239 38 15.60866219368492 29.151095399562323 36.629151335882455 18.61109107087031 39 16.905887021138447 31.071411394079313 34.4005362768439 17.62216530793834 40 18.315657840944617 27.347293365077075 34.01636486064017 20.32068393333814 41 15.051343096938652 28.757665392107352 33.30297236851598 22.888019142438015 42 17.40549022437054 28.39032777817858 31.866928793016374 22.337253204434504 43 17.08733136137364 28.09068609768415 33.81207464588895 21.009907895053267 44 15.837120938845201 28.030986220330423 35.043226799413226 21.08866604141115 45 15.895438039583484 35.22280739725369 29.325926460332347 19.555828102830482 46 19.383822716013754 31.616826587788278 31.635464011735564 17.3638866844624 47 17.045186734963806 29.961943582714092 33.075174951302216 19.91769473101989 48 17.314467450640887 26.36281653560349 35.47886155400043 20.84385445975519 49 17.84839958636943 26.534641560252986 36.47716614962845 19.13979270374913 50 16.941839213139986 30.007394848856507 34.33939350215232 18.71137243585119 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4529.0 1 6474.5 2 8420.0 3 26113.0 4 43806.0 5 31480.0 6 19154.0 7 20674.5 8 22195.0 9 23492.0 10 24789.0 11 24656.5 12 24524.0 13 23484.0 14 22444.0 15 20643.0 16 18842.0 17 17570.0 18 16298.0 19 15646.0 20 14994.0 21 16795.5 22 18597.0 23 23084.0 24 27571.0 25 25105.0 26 22639.0 27 25821.5 28 29004.0 29 37671.0 30 46338.0 31 56731.5 32 67125.0 33 80489.0 34 93853.0 35 101947.5 36 110042.0 37 102755.0 38 95468.0 39 101798.5 40 108129.0 41 119304.5 42 130480.0 43 128269.0 44 126058.0 45 124389.5 46 122721.0 47 119170.0 48 115619.0 49 102995.5 50 90372.0 51 75067.0 52 59762.0 53 51222.0 54 42682.0 55 36913.0 56 31144.0 57 28775.5 58 26407.0 59 24901.5 60 23396.0 61 21381.0 62 19366.0 63 16532.0 64 13698.0 65 10907.5 66 8117.0 67 6660.5 68 5204.0 69 4576.0 70 3948.0 71 3164.5 72 2381.0 73 1902.0 74 1423.0 75 1122.0 76 821.0 77 631.0 78 441.0 79 347.0 80 253.0 81 216.5 82 180.0 83 111.0 84 42.0 85 25.0 86 8.0 87 11.5 88 15.0 89 15.0 90 15.0 91 9.0 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1663320.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.304872792144018 #Duplication Level Percentage of deduplicated Percentage of total 1 77.83238127778874 18.138737447885184 2 8.58206188833387 4.000077212038562 3 3.2856989055208023 2.297183850793474 4 1.6913802905273285 1.5766961005551594 5 1.0493094903748048 1.2227012096387146 6 0.7818592368382877 1.0932678033527459 7 0.5890835690190652 0.9609962347952054 8 0.48689959797532223 0.9077706554688758 9 0.3966457522491694 0.8319400919740051 >10 4.0573524161772 21.197249806311202 >50 0.6958540105553332 11.13863233444481 >100 0.48097859483970756 23.091747972661143 >500 0.06295122764458916 9.775538366107227 >1k 0.007283613115902878 2.2566815647455005 >5k 0.0 0.0 >10k+ 2.6012903985367424E-4 1.5107793492282773 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24921 1.4982685231945747 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3269 0.196534641560253 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.0120722410600484E-5 0.0 0.0 0.05284611499891783 0.0 2 6.0120722410600484E-5 0.0 0.0 0.2813048601591997 0.0 3 6.0120722410600484E-5 0.0 0.0 0.48872135247577136 0.0 4 6.0120722410600484E-5 0.0 0.0 0.8349565928384195 0.0 5 6.0120722410600484E-5 0.0 0.0 1.4940600726258326 0.0 6 6.0120722410600484E-5 0.0 0.0 2.137472043864079 0.0 7 6.0120722410600484E-5 0.0 0.0 2.556393237621143 0.0 8 6.0120722410600484E-5 0.0 0.0 3.482552966356444 0.0 9 6.0120722410600484E-5 0.0 0.0 3.9323160907101458 0.0 10 6.0120722410600484E-5 0.0 0.0 4.6746867710362405 0.0 11 6.0120722410600484E-5 0.0 0.0 5.350323449486569 0.0 12 6.0120722410600484E-5 0.0 0.0 5.943534617511964 0.0 13 6.0120722410600484E-5 0.0 0.0 6.176141692518577 0.0 14 6.0120722410600484E-5 0.0 0.0 6.2719741240410745 0.0 15 6.0120722410600484E-5 0.0 0.0 6.401955125892793 0.0 16 6.0120722410600484E-5 0.0 0.0 6.69402159536349 0.0 17 6.0120722410600484E-5 0.0 0.0 7.0328619868696345 0.0 18 6.0120722410600484E-5 0.0 0.0 7.501202414448212 0.0 19 6.0120722410600484E-5 0.0 0.0 7.740663251809634 0.0 20 6.0120722410600484E-5 0.0 0.0 8.032970204169974 0.0 21 6.0120722410600484E-5 0.0 0.0 8.364776471154077 0.0 22 6.0120722410600484E-5 0.0 0.0 8.68738426760936 0.0 23 6.0120722410600484E-5 0.0 0.0 9.032657576413438 0.0 24 6.0120722410600484E-5 0.0 0.0 9.28811052593608 0.0 25 6.0120722410600484E-5 0.0 0.0 9.510076233076017 0.0 26 6.0120722410600484E-5 0.0 0.0 9.74057908279826 0.0 27 6.0120722410600484E-5 0.0 0.0 9.971803381189428 0.0 28 6.0120722410600484E-5 0.0 0.0 10.228037900103407 0.0 29 6.0120722410600484E-5 0.0 0.0 10.47657696654883 0.0 30 6.0120722410600484E-5 0.0 0.0 10.809465406536326 0.0 31 6.0120722410600484E-5 0.0 0.0 11.123776543298945 0.0 32 6.0120722410600484E-5 0.0 0.0 11.397145468099945 0.0 33 6.0120722410600484E-5 0.0 0.0 11.651696606786427 0.0 34 6.0120722410600484E-5 0.0 0.0 11.9243440829185 0.0 35 6.0120722410600484E-5 0.0 0.0 12.262162422143664 0.0 36 6.0120722410600484E-5 0.0 0.0 12.55597239256427 0.0 37 6.0120722410600484E-5 0.0 0.0 12.835714113940794 0.0 38 6.0120722410600484E-5 0.0 0.0 13.089303321068705 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATCA 65 0.0 44.000004 17 GCCCAAT 35 1.4466059E-7 44.0 9 ACCGCTC 20 7.8575E-4 44.0 18 CGACCGG 30 2.5284025E-6 44.0 33 GTTAGCG 35 1.4466059E-7 44.0 1 CCTCGCA 40 8.3164196E-9 44.0 37 CGTTAGT 30 2.5284025E-6 44.0 32 CGTTAGA 20 7.8575E-4 44.0 42 TATTGCG 70 0.0 44.0 1 AGTGCCG 20 7.8575E-4 44.0 1 CTACGGT 35 1.4466059E-7 44.0 3 ACTACGT 30 2.5284025E-6 44.0 22 TCCGTAG 90 0.0 44.0 34 CGTAATA 20 7.8575E-4 44.0 23 ACGTAAG 30 2.5284025E-6 44.0 1 TTCGATC 25 4.4437013E-5 44.0 27 GTAACGT 25 4.4437013E-5 44.0 31 CCGCAAT 20 7.8575E-4 44.0 33 TACGTTA 45 4.802132E-10 44.0 27 TACGTAC 50 2.7284841E-11 44.0 24 >>END_MODULE