Basic Statistics
Measure | Value |
---|---|
Filename | SRR1546153_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2338973 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 37 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 45030 | 1.925203924970489 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC | 6820 | 0.29158096309790665 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT | 5727 | 0.24485105214981104 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5475 | 0.2340770928095365 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATG | 3754 | 0.16049779112456622 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC | 2385 | 0.10196782947045563 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGTTAC | 20 | 7.858155E-4 | 44.000004 | 16 |
CCCGTTA | 20 | 7.858155E-4 | 44.000004 | 33 |
CCGTATG | 40 | 8.3182385E-9 | 44.000004 | 42 |
CCCGTAG | 20 | 7.858155E-4 | 44.000004 | 27 |
TGCCGAT | 20 | 7.858155E-4 | 44.000004 | 18 |
CGTGATA | 25 | 4.4442575E-5 | 44.0 | 18 |
TTGCGTA | 30 | 2.5288464E-6 | 44.0 | 26 |
GGTTACG | 25 | 4.4442575E-5 | 44.0 | 1 |
CAATACG | 60 | 0.0 | 44.0 | 32 |
TACGTTA | 50 | 2.7284841E-11 | 44.0 | 21 |
AGTCGAC | 50 | 2.7284841E-11 | 44.0 | 27 |
GGCGTAA | 65 | 0.0 | 43.999996 | 24 |
TACGTAG | 65 | 0.0 | 43.999996 | 1 |
ACGGGTA | 195 | 0.0 | 42.871796 | 5 |
CGTTTTT | 25425 | 0.0 | 42.6588 | 1 |
TAGTACG | 135 | 0.0 | 42.37037 | 1 |
TTGAGCG | 175 | 0.0 | 41.485714 | 1 |
TTCGTAC | 165 | 0.0 | 41.333336 | 33 |
GGCGATA | 395 | 0.0 | 41.215187 | 8 |
TGCACGG | 230 | 0.0 | 41.130436 | 2 |