##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546153_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2338973 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92445445073543 31.0 31.0 34.0 30.0 34.0 2 32.27486764490227 33.0 31.0 34.0 30.0 34.0 3 32.18795172069109 33.0 31.0 34.0 30.0 34.0 4 35.931218530526 37.0 35.0 37.0 35.0 37.0 5 35.91985713387884 37.0 35.0 37.0 35.0 37.0 6 35.97239771472351 37.0 35.0 37.0 35.0 37.0 7 36.182536523508396 37.0 35.0 37.0 35.0 37.0 8 36.0608514933691 37.0 35.0 37.0 35.0 37.0 9 37.79710753394759 39.0 38.0 39.0 35.0 39.0 10 37.51066130305908 39.0 37.0 39.0 35.0 39.0 11 37.41076275784287 39.0 37.0 39.0 35.0 39.0 12 37.040541724936546 39.0 35.0 39.0 33.0 39.0 13 36.913081083022334 39.0 35.0 39.0 33.0 39.0 14 38.15439383011262 40.0 37.0 41.0 33.0 41.0 15 38.24855011152331 40.0 37.0 41.0 33.0 41.0 16 38.32223629772554 40.0 36.0 41.0 34.0 41.0 17 38.17950399598456 40.0 36.0 41.0 34.0 41.0 18 37.97605059998555 39.0 36.0 41.0 34.0 41.0 19 37.76501823663634 39.0 36.0 41.0 34.0 41.0 20 37.43388316154141 39.0 35.0 41.0 33.0 41.0 21 37.40871656064435 39.0 35.0 41.0 33.0 41.0 22 37.33326079437428 39.0 35.0 41.0 33.0 41.0 23 37.284498367445885 39.0 35.0 41.0 33.0 41.0 24 37.23096547074293 39.0 35.0 41.0 33.0 41.0 25 37.228143291949074 39.0 35.0 41.0 33.0 41.0 26 37.16152986802327 39.0 35.0 41.0 33.0 41.0 27 37.08677269895805 39.0 35.0 41.0 33.0 41.0 28 37.017522647760366 39.0 35.0 41.0 33.0 41.0 29 36.935234395608674 39.0 35.0 41.0 33.0 41.0 30 36.74656398342349 39.0 35.0 41.0 32.0 41.0 31 36.461578650116955 39.0 35.0 41.0 31.0 41.0 32 36.1073214611712 39.0 35.0 41.0 30.0 41.0 33 35.70167120355814 39.0 35.0 41.0 27.0 41.0 34 35.233184820859414 38.0 35.0 41.0 23.0 41.0 35 34.98951633900862 38.0 35.0 41.0 22.0 41.0 36 34.83956462943352 38.0 35.0 41.0 21.0 41.0 37 34.785326722454684 38.0 35.0 41.0 21.0 41.0 38 34.732332951256815 38.0 35.0 41.0 20.0 41.0 39 34.63185509195703 38.0 35.0 41.0 19.0 41.0 40 34.53513657489847 38.0 34.0 41.0 18.0 41.0 41 34.42119639688017 38.0 34.0 41.0 18.0 41.0 42 34.384814617355566 38.0 34.0 41.0 18.0 41.0 43 34.262304866281056 38.0 34.0 40.0 18.0 41.0 44 34.12324981947205 38.0 34.0 40.0 17.0 41.0 45 34.06111742204805 38.0 34.0 40.0 18.0 41.0 46 34.017940352453834 38.0 34.0 40.0 18.0 41.0 47 33.95289385555113 38.0 34.0 40.0 18.0 41.0 48 33.88895639239957 38.0 34.0 40.0 17.0 41.0 49 33.83122891970108 37.0 34.0 40.0 17.0 41.0 50 33.67680131408101 37.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 7.0 12 5.0 13 11.0 14 16.0 15 46.0 16 95.0 17 303.0 18 729.0 19 1492.0 20 2865.0 21 4969.0 22 8524.0 23 13295.0 24 20411.0 25 32930.0 26 51230.0 27 61092.0 28 58662.0 29 51956.0 30 50029.0 31 52712.0 32 61946.0 33 79659.0 34 136951.0 35 257577.0 36 149539.0 37 178385.0 38 306056.0 39 757476.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.749583684805252 21.989864782534898 28.335598572535897 20.924952960123953 2 34.890911523989374 25.08626649388428 28.795159242966896 11.22766273915945 3 25.554848217572413 23.915068707505387 39.43769338081286 11.092389694109338 4 22.45485518644294 25.171261062013112 40.31521526755546 12.058668483988486 5 20.625847327010614 28.78814761863433 37.583247006271556 13.002758048083496 6 18.766698033709666 36.86511131167397 35.72559409621231 8.642596558404051 7 74.93374228774766 4.9557647736848605 18.08977700896932 2.020715929598161 8 75.35597888474985 4.820491728634747 17.19699201316133 2.6265373734540756 9 70.45263027833157 6.199986062258948 19.048402867412324 4.298980791997171 10 34.604204494878736 30.879193560592622 24.26017743684942 10.256424507679226 11 30.29068740853357 22.0023061403445 34.42698996525398 13.280016485867943 12 27.468850645133568 20.96086615792487 37.48546904987787 14.08481414706369 13 17.205713789770126 32.234189962859766 36.53308524724313 14.02701100012698 14 12.994592070964478 33.82847942237896 39.18386402921282 13.993064477443735 15 11.616893397230323 24.61533331081633 50.26240148988467 13.505371802068685 16 15.047031325286783 23.02134312794547 44.74570676959503 17.185918777172716 17 14.251169209734357 23.712073632316404 39.187583610413625 22.849173547535607 18 16.815371532719702 23.590268036441636 43.13316143452703 16.46119899631163 19 20.995838771973855 25.014611113510078 37.80804652298252 16.18150359153355 20 21.931121051846258 23.55927152643489 38.582788257923454 15.926819163795392 21 18.051426844174774 26.552422794106644 38.859405388604316 16.536744973114267 22 17.04282178545883 25.038895275832594 36.924325334238574 20.993957604469994 23 14.706711022316204 28.673310893285215 37.121292122653834 19.498685961744748 24 14.857802975921484 25.32979217802001 44.4612229384435 15.351181907615008 25 14.126798385445236 28.565400284654846 41.636820946629136 15.670980383270777 26 14.622657037939302 29.775290266283534 38.53533153225796 17.0667211635192 27 14.222780681948871 31.33187086811177 36.12183637861574 18.323512071323613 28 12.396765588999958 27.78501504720234 42.522380549070036 17.29583881472766 29 13.911917751936425 25.144155148434805 41.71886550208147 19.2250615975473 30 15.591501056232799 29.907057499167372 38.51472419732934 15.98671724727049 31 18.44441983725336 29.693074695603585 36.51286269657666 15.3496427705664 32 20.589164560685393 27.231267740157755 35.56834559441259 16.61122210474426 33 20.032424487157396 29.392729202089978 32.92397988347878 17.65086642727385 34 16.89523564401983 26.935881688245228 36.71560124892421 19.453281418810732 35 16.974586709637094 29.873581268360088 35.881773752839386 17.27005826916343 36 20.59053268250638 29.830314415771365 33.19020783908151 16.38894506264074 37 16.970012052298166 31.99361429140054 35.12545890867488 15.910914747626414 38 17.281045997538236 30.28525767505653 34.830585902445215 17.603110424960015 39 17.81760627420667 31.739271894117632 32.55099567203213 17.89212615964357 40 18.993036687469246 26.740197514037146 33.991243165269545 20.275522633224067 41 14.755664131223403 28.74808730156355 34.20364407797781 22.29260448923523 42 16.44623516389458 28.952022960504458 33.73690076798663 20.864841107614325 43 16.625117091988663 28.329784054796697 34.361149102618974 20.68394975059567 44 15.94353590229558 28.78040917958437 35.651587256458285 19.62446766166176 45 15.888212476159408 33.23753630332629 31.28479892670843 19.58945229380587 46 18.6368974759435 30.90702628888833 32.99828599988114 17.45779023528703 47 17.055476912302964 30.20385442670779 34.538662908892064 18.20200575209718 48 18.066561691819444 27.025750190361325 35.2922415094146 19.61544660840463 49 17.98383307545662 26.47080577672337 36.688452581538996 18.856908566281014 50 16.90400017443553 29.97383894555431 33.83023232846211 19.29192855154805 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7888.0 1 11123.5 2 14359.0 3 45807.0 4 77255.0 5 53446.5 6 29638.0 7 30269.0 8 30900.0 9 31910.5 10 32921.0 11 32561.5 12 32202.0 13 30853.0 14 29504.0 15 29307.5 16 29111.0 17 26588.0 18 24065.0 19 24102.0 20 24139.0 21 24400.5 22 24662.0 23 29703.0 24 34744.0 25 39224.0 26 43704.0 27 47058.5 28 50413.0 29 63897.5 30 77382.0 31 90170.0 32 102958.0 33 112201.5 34 121445.0 35 128458.0 36 135471.0 37 137083.5 38 138696.0 39 148359.5 40 158023.0 41 167461.0 42 176899.0 43 184778.0 44 192657.0 45 180973.0 46 169289.0 47 152504.0 48 135719.0 49 115889.0 50 96059.0 51 82814.5 52 69570.0 53 62847.5 54 56125.0 55 49838.5 56 43552.0 57 41422.5 58 39293.0 59 39379.5 60 39466.0 61 35766.5 62 32067.0 63 28282.0 64 24497.0 65 19805.0 66 15113.0 67 12620.0 68 10127.0 69 8686.5 70 7246.0 71 6319.0 72 5392.0 73 4314.5 74 3237.0 75 2285.0 76 1333.0 77 1086.5 78 840.0 79 648.5 80 457.0 81 416.0 82 375.0 83 227.5 84 80.0 85 72.5 86 65.0 87 44.5 88 24.0 89 16.0 90 8.0 91 4.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2338973.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.221172933820867 #Duplication Level Percentage of deduplicated Percentage of total 1 77.69913575457656 17.265659324108697 2 8.543321043900018 3.796852286913066 3 3.088518713686718 2.0589152533852357 4 1.6396243915212574 1.4573750860201868 5 1.0834908786446664 1.2038219093290323 6 0.7625544083947157 1.0166912028231863 7 0.5589079093422065 0.869371251530141 8 0.45521271308695516 0.8092288335343207 9 0.4065876329100986 0.8131368693283357 >10 4.4303788498186565 22.13770604422067 >50 0.7592776437298246 11.574741196033694 >100 0.5112924416830382 24.030146335203195 >500 0.053133911377137785 7.850559366733116 >1k 0.007785188480166709 2.3888587848253837 >5k 5.838891360125031E-4 0.779433566038256 >10k+ 1.946297120041677E-4 1.947502689973514 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45030 1.925203924970489 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC 6820 0.29158096309790665 No Hit GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT 5727 0.24485105214981104 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5475 0.2340770928095365 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATG 3754 0.16049779112456622 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC 2385 0.10196782947045563 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07614453009932137 0.0 2 0.0 0.0 0.0 0.3085969782464355 0.0 3 0.0 0.0 0.0 0.43134315787313493 0.0 4 0.0 0.0 0.0 0.7118508849824261 0.0 5 0.0 0.0 0.0 1.4358866049330197 0.0 6 0.0 0.0 0.0 1.9622287217509564 0.0 7 0.0 0.0 0.0 2.351160103173487 0.0 8 0.0 0.0 0.0 3.129706926929041 0.0 9 0.0 0.0 0.0 3.479005529349847 0.0 10 0.0 0.0 0.0 4.335407035480957 0.0 11 0.0 0.0 0.0 4.945845890482703 0.0 12 0.0 0.0 0.0 5.60626394575739 0.0 13 0.0 0.0 0.0 5.810840911801889 0.0 14 0.0 0.0 0.0 5.892457929185159 0.0 15 0.0 0.0 0.0 6.02734618997312 0.0 16 0.0 0.0 0.0 6.265142863983466 0.0 17 0.0 0.0 0.0 6.557536149412584 0.0 18 0.0 0.0 0.0 6.951897264312158 0.0 19 0.0 0.0 0.0 7.188625093149857 0.0 20 0.0 0.0 0.0 7.466824114686232 0.0 21 0.0 0.0 0.0 7.75797753971508 0.0 22 0.0 0.0 0.0 8.053876637310477 0.0 23 0.0 0.0 0.0 8.395436800681324 0.0 24 0.0 0.0 0.0 8.621005885916597 0.0 25 0.0 0.0 0.0 8.820324133711676 0.0 26 0.0 0.0 0.0 9.041703345870175 0.0 27 0.0 0.0 0.0 9.260773852455758 0.0 28 0.0 0.0 0.0 9.5416663638272 0.0 29 0.0 0.0 0.0 9.784336971824814 0.0 30 4.275380690585142E-5 0.0 0.0 10.101527465259325 0.0 31 4.275380690585142E-5 0.0 0.0 10.399478745586205 0.0 32 4.275380690585142E-5 0.0 0.0 10.649417500757812 0.0 33 4.275380690585142E-5 0.0 0.0 10.911412829476868 0.0 34 4.275380690585142E-5 0.0 0.0 11.183498056625707 0.0 35 4.275380690585142E-5 0.0 0.0 11.502697978984793 0.0 36 4.275380690585142E-5 0.0 0.0 11.789319500481621 0.0 37 4.275380690585142E-5 0.0 0.0 12.045457557654577 0.0 38 4.275380690585142E-5 0.0 0.0 12.288983241790307 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 20 7.858155E-4 44.000004 16 CCCGTTA 20 7.858155E-4 44.000004 33 CCGTATG 40 8.3182385E-9 44.000004 42 CCCGTAG 20 7.858155E-4 44.000004 27 TGCCGAT 20 7.858155E-4 44.000004 18 CGTGATA 25 4.4442575E-5 44.0 18 TTGCGTA 30 2.5288464E-6 44.0 26 GGTTACG 25 4.4442575E-5 44.0 1 CAATACG 60 0.0 44.0 32 TACGTTA 50 2.7284841E-11 44.0 21 AGTCGAC 50 2.7284841E-11 44.0 27 GGCGTAA 65 0.0 43.999996 24 TACGTAG 65 0.0 43.999996 1 ACGGGTA 195 0.0 42.871796 5 CGTTTTT 25425 0.0 42.6588 1 TAGTACG 135 0.0 42.37037 1 TTGAGCG 175 0.0 41.485714 1 TTCGTAC 165 0.0 41.333336 33 GGCGATA 395 0.0 41.215187 8 TGCACGG 230 0.0 41.130436 2 >>END_MODULE