SRR1546152_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546152_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2379840
Sequences flagged as poor quality	0
Sequence length	50
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45363	1.906136546994756	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC	6600	0.27732956837434447	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5537	0.23266270001344627	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT	5476	0.2300995024875622	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATG	3514	0.1476569853435525	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC	2485	0.1044187844560979	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2407	0.10114125319349201	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGC	20	7.858181E-4	44.000004	35
TACGAAC	20	7.858181E-4	44.000004	41
TATAGCG	95	0.0	44.000004	1
AGTCGAC	20	7.858181E-4	44.000004	27
TCTATCG	45	4.802132E-10	44.000004	22
TACTTCG	30	2.5288646E-6	44.0	13
GAATACG	50	2.7284841E-11	44.0	1
CGACTAT	35	1.4469515E-7	44.0	22
CGTTTTT	25140	0.0	42.43357	1
CGACGGT	125	0.0	42.24	28
AATACGG	125	0.0	42.24	2
CGCGTTA	110	0.0	42.0	18
GCTCGAT	80	0.0	41.250004	13
TTCGTAC	225	0.0	41.066666	33
ATATCGG	75	0.0	41.066666	2
CCCTACA	3665	0.0	40.998634	27
CCCTAGC	3715	0.0	40.74293	21
ATTAGCG	200	0.0	40.7	1
TCGTTAA	65	0.0	40.615383	36
TTGGGAC	2220	0.0	40.135136	5