##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546150_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4319189 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.796523375105835 31.0 31.0 34.0 30.0 34.0 2 32.20388804472321 33.0 31.0 34.0 30.0 34.0 3 32.27306885621351 34.0 31.0 34.0 30.0 34.0 4 35.949926016203506 37.0 35.0 37.0 35.0 37.0 5 35.85177425669495 37.0 35.0 37.0 35.0 37.0 6 35.92475879152313 37.0 35.0 37.0 35.0 37.0 7 36.136110737455574 37.0 35.0 37.0 35.0 37.0 8 36.01460019461987 37.0 35.0 37.0 35.0 37.0 9 37.717352030670575 39.0 38.0 39.0 35.0 39.0 10 37.43836354463766 39.0 37.0 39.0 34.0 39.0 11 37.29260122675808 39.0 37.0 39.0 34.0 39.0 12 36.989462142082694 39.0 35.0 39.0 33.0 39.0 13 36.83002225649306 39.0 35.0 39.0 33.0 39.0 14 38.04549534646435 40.0 36.0 41.0 33.0 41.0 15 38.190344529956896 40.0 37.0 41.0 33.0 41.0 16 38.26574965809554 40.0 36.0 41.0 34.0 41.0 17 38.170536413201646 40.0 36.0 41.0 34.0 41.0 18 38.03742276617208 39.0 36.0 41.0 34.0 41.0 19 37.90212977482578 40.0 36.0 41.0 34.0 41.0 20 37.6635815195862 39.0 35.0 41.0 34.0 41.0 21 37.60128348169066 39.0 35.0 41.0 33.0 41.0 22 37.540056709720275 39.0 35.0 41.0 33.0 41.0 23 37.45661882358007 39.0 35.0 41.0 33.0 41.0 24 37.415743094363314 39.0 35.0 41.0 33.0 41.0 25 37.41606769233761 39.0 35.0 41.0 33.0 41.0 26 37.361020321176035 39.0 35.0 41.0 33.0 41.0 27 37.29653738236507 39.0 35.0 41.0 33.0 41.0 28 37.210757852921 39.0 35.0 41.0 33.0 41.0 29 37.1260229640333 39.0 35.0 41.0 33.0 41.0 30 36.99488283564345 39.0 35.0 41.0 32.0 41.0 31 36.79688061809752 39.0 35.0 41.0 31.0 41.0 32 36.50936854117752 39.0 35.0 41.0 31.0 41.0 33 36.21817568066598 39.0 35.0 41.0 30.0 41.0 34 35.87669305510826 39.0 35.0 41.0 27.0 41.0 35 35.66463866248965 39.0 35.0 41.0 25.0 41.0 36 35.55001853357193 39.0 35.0 41.0 25.0 41.0 37 35.49032283606946 39.0 35.0 41.0 24.0 41.0 38 35.44835755045681 39.0 35.0 41.0 24.0 41.0 39 35.36590179313755 39.0 35.0 41.0 24.0 41.0 40 35.28380837235879 39.0 35.0 41.0 23.0 41.0 41 35.15854318947377 39.0 35.0 41.0 23.0 41.0 42 35.084700854720644 39.0 35.0 41.0 23.0 41.0 43 34.99474021627671 39.0 35.0 41.0 23.0 41.0 44 34.91017665584905 38.0 35.0 41.0 22.0 41.0 45 34.857269732813265 38.0 34.0 40.0 22.0 41.0 46 34.77365704533884 38.0 34.0 40.0 22.0 41.0 47 34.67737045079528 38.0 34.0 40.0 21.0 41.0 48 34.624253071583574 38.0 34.0 40.0 21.0 41.0 49 34.567831599867475 38.0 34.0 40.0 20.0 41.0 50 34.409708628170705 38.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 6.0 11 7.0 12 4.0 13 14.0 14 23.0 15 59.0 16 189.0 17 433.0 18 1057.0 19 2303.0 20 4414.0 21 7482.0 22 12981.0 23 20162.0 24 31108.0 25 50131.0 26 78172.0 27 95588.0 28 94379.0 29 87373.0 30 87820.0 31 96781.0 32 117081.0 33 149879.0 34 253089.0 35 437007.0 36 256441.0 37 330407.0 38 586197.0 39 1518600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.47717731268532 23.590354578139554 29.30645081750301 17.626017291672117 2 33.07000457724818 26.634282500719465 29.15644580498793 11.139267117044426 3 24.177849128621137 26.05831789254881 38.29901863521138 11.464814343618675 4 22.971395787496217 26.466797354781185 38.313859384250144 12.24794747347245 5 20.574788461444964 30.28550035666418 36.661975199510834 12.477735982380025 6 20.49442615268746 38.37935779147428 32.125012357643996 9.001203698194267 7 79.21345882294106 4.063424869807735 14.539025729135723 2.184090578115475 8 78.97737283550222 4.569005894393601 13.51316184589283 2.940459424211351 9 72.84809717750254 6.671761758978363 15.431971140878531 5.04816992264057 10 33.68018857243802 34.51645667739939 21.651402612851626 10.151952137310962 11 28.2171490990554 22.511749312197267 35.19910798068804 14.071993608059291 12 26.77944864186309 22.774946870813014 35.41523651778146 15.03036796954243 13 17.056627991967936 31.49489406460333 37.20862874951756 14.239849193911173 14 13.021171335637316 33.586907171693575 36.979581120437196 16.412340372231917 15 11.477293538208215 26.3070451420394 47.88651295416801 14.329148365584373 16 13.418329228010165 25.328528110254034 42.927711660684444 18.325431001051353 17 13.713315161712073 25.405880594713498 37.17339065273597 23.707413590838467 18 15.67266447474283 27.16491452446281 39.89630923768328 17.266111763111084 19 18.20357942197019 28.190986780157107 35.369857628364954 18.23557616950775 20 20.282534522105884 26.73191657044876 37.59490496942829 15.390643938017067 21 16.46174779570887 28.618335525488696 38.10854306213504 16.81137361666739 22 17.28641650087551 25.17831472528755 35.20820691106594 22.327061862770996 23 14.762539912006629 28.906699845734927 35.72388242329752 20.60687781896092 24 14.192803324883444 26.137082679178892 43.61747077981538 16.052643216122288 25 13.835815010642044 31.016771898613378 39.34583552606751 15.801577564677071 26 14.242071833392798 30.663163848583615 36.82976132787891 18.265002990144676 27 14.365821917031182 31.56622690046673 35.67679024928059 18.391160933221492 28 12.456227314896385 29.141906038378963 40.69808012569026 17.703786521034388 29 13.817362472445637 26.351220101736693 38.845973167647905 20.985444258169764 30 14.774741276660967 30.891748427771976 36.54209158247069 17.79141871309637 31 17.29079232235496 30.622276543119554 34.08250947110673 18.004421663418757 32 18.512665224883655 28.41415367560901 34.950126053756854 18.123055045750487 33 17.547136742569034 29.60134414122651 33.36216590660885 19.4893532095956 34 15.472603768901985 28.0653150394669 34.969713064188674 21.492368127442443 35 16.381223419489167 27.400884749428656 36.09029380284123 20.12759802824095 36 18.75847526005461 29.386465838841502 33.545348443886105 18.30971045721778 37 15.419677166245794 30.5193173996322 36.801723656918 17.25928177720401 38 14.706858162493006 29.62880299982242 35.810773735532294 19.853565102152277 39 16.182135118421538 30.698841842762608 34.79697230197614 18.322050736839717 40 17.51215332322804 27.959461834154514 34.79048960348806 19.737895239129383 41 14.569540717018867 29.288438176704005 34.034167062381385 22.107854043895742 42 16.49751839986627 28.606759278188566 33.59132929816223 21.304393023782936 43 16.335520395148258 28.515723669420346 34.17171603280153 20.97703990262987 44 16.108695405549515 29.66135540723038 33.11123917013125 21.11871001708886 45 15.205308218741992 32.65652417618215 32.06090310009587 20.077264504979986 46 17.961404328451476 31.122578798936562 32.71933689403265 18.19667997857931 47 16.183732640548957 29.540754062857633 34.76810114120961 19.5074121553838 48 16.17787505941509 27.213465305639556 36.0164141925718 20.592245442373557 49 16.80507613813612 27.08714529510054 35.84522464749748 20.262553919265862 50 15.974549851835611 29.955067953729277 34.43806233068291 19.632319863752198 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7841.0 1 11807.0 2 15773.0 3 52392.0 4 89011.0 5 63521.0 6 38031.0 7 39223.0 8 40415.0 9 43095.5 10 45776.0 11 45791.5 12 45807.0 13 43062.0 14 40317.0 15 38783.5 16 37250.0 17 34829.0 18 32408.0 19 33296.5 20 34185.0 21 38144.5 22 42104.0 23 54966.0 24 67828.0 25 85619.5 26 103411.0 27 119208.0 28 135005.0 29 156308.0 30 177611.0 31 204737.0 32 231863.0 33 254736.0 34 277609.0 35 274739.5 36 271870.0 37 281989.5 38 292109.0 39 298199.0 40 304289.0 41 317839.0 42 331389.0 43 320722.0 44 310055.0 45 326894.0 46 343733.0 47 313580.0 48 283427.0 49 256446.5 50 229466.0 51 188517.5 52 147569.0 53 120680.0 54 93791.0 55 78046.0 56 62301.0 57 55997.5 58 49694.0 59 44828.5 60 39963.0 61 37286.0 62 34609.0 63 28902.0 64 23195.0 65 18236.5 66 13278.0 67 11798.0 68 10318.0 69 8352.5 70 6387.0 71 5100.0 72 3813.0 73 3320.5 74 2828.0 75 2138.0 76 1448.0 77 1091.5 78 735.0 79 507.5 80 280.0 81 258.5 82 237.0 83 145.5 84 54.0 85 38.0 86 22.0 87 24.5 88 27.0 89 17.5 90 8.0 91 8.5 92 9.0 93 15.0 94 21.0 95 20.0 96 19.0 97 9.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4319189.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.86744547064125 #Duplication Level Percentage of deduplicated Percentage of total 1 75.6272062734353 13.512649841875435 2 9.615916384030058 3.4362372328380566 3 3.976414941346942 2.131451313994788 4 2.1614342384815943 1.5447723357778755 5 1.307822512118171 1.1683723710274239 6 0.8826248297870929 0.9462150610352937 7 0.6245945844245724 0.7811936774924716 8 0.49484576149097664 0.7073303727854376 9 0.3930000055578818 0.6319715552340445 >10 3.284343408902357 12.910788729796579 >50 0.8162773654964608 10.216865384791598 >100 0.6532957026882308 24.755292171005618 >500 0.11799301700998585 14.543530078952346 >1k 0.043574729307358506 10.471238472989091 >5k 2.624983693214368E-4 0.31447625386386147 >10k+ 3.937475539821552E-4 1.9276151465400213 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49419 1.1441731306502216 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCC 18897 0.43751269046110275 No Hit GAATCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTT 13882 0.3214029300408016 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATG 8094 0.18739629129449997 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5316 0.12307866129497923 No Hit GCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTG 4710 0.10904824956722199 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11830924740732578 0.0 2 0.0 0.0 0.0 0.47872413084956456 0.0 3 0.0 0.0 0.0 0.681678898515439 0.0 4 0.0 0.0 0.0 1.071659517562209 0.0 5 0.0 0.0 0.0 2.1061592812910015 0.0 6 0.0 0.0 0.0 2.800479441858182 0.0 7 0.0 0.0 0.0 3.3118717425887128 0.0 8 0.0 0.0 0.0 4.242764092981345 0.0 9 0.0 0.0 0.0 4.583082611110558 0.0 10 0.0 0.0 0.0 5.604848502809208 0.0 11 0.0 0.0 0.0 6.263745346637991 0.0 12 0.0 0.0 0.0 7.031759897517798 0.0 13 0.0 0.0 0.0 7.282617176511609 0.0 14 2.315249460025945E-5 0.0 0.0 7.376569999599462 0.0 15 2.315249460025945E-5 0.0 0.0 7.570773124306438 0.0 16 2.315249460025945E-5 0.0 0.0 7.902502066938956 0.0 17 2.315249460025945E-5 0.0 0.0 8.285212802681244 0.0 18 2.315249460025945E-5 0.0 0.0 8.81123747999914 0.0 19 2.315249460025945E-5 0.0 0.0 9.115137124122144 0.0 20 2.315249460025945E-5 0.0 0.0 9.404057104238781 0.0 21 2.315249460025945E-5 0.0 0.0 9.796399277734778 0.0 22 2.315249460025945E-5 0.0 0.0 10.216709664707889 0.0 23 2.315249460025945E-5 0.0 0.0 10.676981257361046 0.0 24 2.315249460025945E-5 0.0 0.0 11.012229379172803 0.0 25 2.315249460025945E-5 0.0 0.0 11.29302283368475 0.0 26 2.315249460025945E-5 0.0 0.0 11.572658663466683 0.0 27 2.315249460025945E-5 0.0 0.0 11.85789739694188 0.0 28 2.315249460025945E-5 0.0 0.0 12.150845911118962 0.0 29 2.315249460025945E-5 0.0 0.0 12.461783913600447 0.0 30 2.315249460025945E-5 0.0 0.0 12.862229460206533 0.0 31 2.315249460025945E-5 0.0 0.0 13.225839387903608 0.0 32 2.315249460025945E-5 0.0 0.0 13.548168417728421 0.0 33 2.315249460025945E-5 0.0 0.0 13.849660202412998 0.0 34 2.315249460025945E-5 0.0 0.0 14.183333954591939 0.0 35 2.315249460025945E-5 0.0 0.0 14.606839385819884 0.0 36 2.315249460025945E-5 0.0 0.0 14.946787464035493 0.0 37 2.315249460025945E-5 0.0 0.0 15.273307095382952 0.0 38 4.63049892005189E-5 0.0 0.0 15.573571797853717 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 200 0.0 44.0 1 CGCGATA 20 7.8588974E-4 44.0 11 TACGCTA 25 4.444886E-5 44.0 33 ATAACCG 30 2.5293466E-6 44.0 1 CACGTAT 20 7.8588974E-4 44.0 18 GCTCGAA 20 7.8588974E-4 44.0 40 GGCTCGA 20 7.8588974E-4 44.0 39 TCGCGAT 20 7.8588974E-4 44.0 12 CGTTTTT 33140 0.0 42.51961 1 GCACGTT 80 0.0 41.25 42 CACGTTA 80 0.0 41.25 43 CACGTAA 75 0.0 41.066666 44 AACGCCC 260 0.0 40.615383 35 GGATGCC 6130 0.0 40.554646 8 TGTTGCG 230 0.0 40.173916 1 CTACGGG 610 0.0 40.032787 3 TAGTACG 110 0.0 40.000004 1 TTAGCGG 740 0.0 39.837837 2 GATGCCA 5970 0.0 39.83585 9 CGCAATA 105 0.0 39.809525 17 >>END_MODULE