##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546147_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 604197 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.08833542702132 30.0 28.0 31.0 16.0 33.0 2 27.910037620180173 30.0 27.0 31.0 16.0 33.0 3 27.718906250775824 30.0 26.0 31.0 16.0 33.0 4 32.390925476293326 35.0 32.0 35.0 28.0 35.0 5 33.29479457858943 35.0 33.0 35.0 28.0 37.0 6 33.515158135508784 35.0 33.0 35.0 29.0 37.0 7 33.56741427051111 35.0 33.0 35.0 30.0 37.0 8 33.13033828370548 35.0 32.0 35.0 28.0 37.0 9 33.67683057016172 35.0 32.0 39.0 27.0 39.0 10 34.326103903197136 35.0 32.0 39.0 28.0 39.0 11 34.486139454515666 37.0 33.0 39.0 27.0 39.0 12 33.86545447925097 35.0 32.0 39.0 27.0 39.0 13 33.74629632388112 35.0 32.0 39.0 25.0 39.0 14 35.650458376986315 37.0 34.0 40.0 30.0 41.0 15 35.07370940272792 37.0 33.0 40.0 27.0 41.0 16 35.18923960231514 36.0 33.0 40.0 27.0 41.0 17 34.410298296747584 36.0 32.0 39.0 25.0 41.0 18 34.082971282545266 36.0 32.0 39.0 26.0 40.0 19 33.01782696703228 35.0 31.0 38.0 24.0 40.0 20 32.85180661274386 35.0 30.0 38.0 24.0 40.0 21 33.67505962459264 35.0 32.0 38.0 25.0 40.0 22 34.12401915269358 35.0 32.0 39.0 26.0 40.0 23 34.26067160214301 35.0 32.0 39.0 26.0 40.0 24 34.40868623975293 36.0 33.0 39.0 26.0 40.0 25 34.85034351378772 36.0 33.0 39.0 27.0 40.0 26 34.0628437413625 35.0 33.0 39.0 25.0 40.0 27 33.88876641227944 36.0 33.0 39.0 24.0 40.0 28 33.792006580635125 36.0 33.0 39.0 24.0 40.0 29 33.70007298943887 35.0 32.0 39.0 24.0 40.0 30 33.49702001168493 36.0 33.0 39.0 21.0 40.0 31 32.84328290276185 35.0 31.0 38.0 20.0 40.0 32 32.33008935827222 35.0 30.0 39.0 16.0 40.0 33 31.970062744436003 35.0 30.0 39.0 15.0 40.0 34 31.23903958477119 35.0 29.0 39.0 10.0 40.0 35 30.93413241045553 35.0 27.0 39.0 8.0 40.0 36 30.939038095190806 35.0 27.0 39.0 10.0 40.0 37 30.844558976625173 35.0 26.0 39.0 8.0 40.0 38 30.59783481215564 35.0 25.0 39.0 9.0 40.0 39 30.04343781912191 35.0 25.0 38.0 8.0 40.0 40 29.94438403368438 35.0 25.0 38.0 8.0 40.0 41 29.548761413909702 34.0 24.0 38.0 8.0 40.0 42 29.561681041117385 35.0 23.0 38.0 8.0 40.0 43 29.89330135700773 35.0 24.0 38.0 8.0 40.0 44 30.25171756893861 35.0 25.0 38.0 8.0 40.0 45 30.107287854789085 35.0 24.0 38.0 8.0 40.0 46 29.725392545808734 35.0 24.0 38.0 8.0 40.0 47 29.848466642502363 35.0 25.0 38.0 8.0 40.0 48 29.822946820325157 35.0 24.0 38.0 8.0 40.0 49 29.738300587391198 35.0 24.0 38.0 7.0 40.0 50 29.689288427449988 35.0 24.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 5.0 14 19.0 15 75.0 16 253.0 17 688.0 18 1691.0 19 3638.0 20 5693.0 21 7749.0 22 10310.0 23 13165.0 24 16715.0 25 20377.0 26 23883.0 27 25263.0 28 25467.0 29 26631.0 30 29735.0 31 35004.0 32 40829.0 33 47812.0 34 55415.0 35 60434.0 36 52891.0 37 51148.0 38 42117.0 39 7183.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 52.30876684260266 14.213741544562453 12.325450142916962 21.152041469917922 2 26.03339639223631 52.61032411614093 12.845479206285368 8.510800285337398 3 13.222012025878977 51.28708020728339 27.217943816338046 8.272963950499589 4 13.640087587326649 13.998910951229481 62.10954374152801 10.251457719915855 5 39.92555408252606 15.989983399454152 28.11202306532472 15.972439452695063 6 11.493767761177232 47.53714434199441 32.01406163883634 8.955026257992014 7 34.23717760928969 8.828577434181236 50.62256184655005 6.31168310997903 8 28.03903362644965 33.841280244688406 28.136683896146458 9.983002232715489 9 27.293084871325078 8.283391013196027 25.228691966361964 39.19483214911693 10 34.765813137105944 14.946118567288483 32.61485906086922 17.673209234736355 11 32.04683240731086 15.9608538274768 33.70821106361005 18.284102701602293 12 17.597902670817632 13.978056825836607 37.99191323359765 30.43212726974811 13 26.516516963837955 18.37645668548503 43.54788256148243 11.559143789194584 14 12.137431996517693 40.31416905413301 29.575618548254955 17.972780401094347 15 8.954860749060323 19.34716656984394 45.69420238763185 26.003770293463884 16 9.667045682120236 23.244901911131635 30.02083757449971 37.067214832248425 17 9.858208498221606 32.89953442337516 36.05281058992348 21.189446488479753 18 9.689720405761697 24.558380793019495 34.49123381943306 31.26066498178574 19 11.155467504803896 25.655705010120872 28.700241808549197 34.488585676526036 20 22.500608245323956 24.815581672864976 37.43116897303363 15.252641108777434 21 13.703311999232037 37.844610284394 33.67726089338411 14.774816822989854 22 10.602171146165903 19.009859367060745 42.99524823857119 27.392721248202157 23 23.204021205004327 26.54779815192727 36.29346057660002 13.954720066468388 24 19.517640769484128 30.180388184648383 29.329175748969295 20.972795296898198 25 12.195194613677327 44.26370869103951 27.652735779886363 15.888360915396799 26 13.268851053547104 18.068113545747497 44.370627460910924 24.292407939794472 27 28.401001660054586 21.112484835244132 27.789611666393576 22.696901838307703 28 11.202306532472024 29.872376062774226 35.63837622497298 23.28694117978077 29 18.43041259721581 18.04974205432996 36.88416195379984 26.635683394654393 30 11.763712828762804 35.660223403955996 30.326532571330212 22.24953119595099 31 15.064788471309853 25.506250444805257 26.03256884757786 33.39639223630703 32 26.97034245453056 30.5678445937335 26.007908016756126 16.453904934979814 33 20.902122983066782 26.49169062408453 26.192947002384987 26.413239390463705 34 16.536162874029497 21.545125182680483 34.45200820262265 27.466703740667363 35 25.206017242720502 20.996297565198105 27.096460260477954 26.701224931603434 36 15.36634574484812 31.363777046228297 26.056402133741148 27.21347507518243 37 12.878415483691578 25.32154247703977 35.40103641693024 26.39900562233841 38 15.552708801930496 30.182870818623726 22.274357535704414 31.990062843741363 39 18.989501768462937 25.564840606623335 32.80006355542977 22.64559406948396 40 19.1003927526949 23.98207869287666 32.28218610817333 24.635342446255112 41 13.33687522447149 24.884267879516116 28.696104085256962 33.08275281075544 42 20.138630281183122 22.187134328704047 38.11538289663802 19.55885249347481 43 21.12688411230112 23.4140520393183 25.46255608683923 29.996507761541352 44 18.952758785627864 20.497288136154268 31.33431645638757 29.2156366218303 45 18.332762327519003 20.00854026087518 31.905156761784646 29.75354064982117 46 28.199577290188465 26.125915885050738 24.85431076288032 20.82019606188048 47 13.580669880850122 25.25749052047594 39.992254181996934 21.169585416677013 48 19.76011135440924 22.003419414528704 28.423179856900976 29.81328937416108 49 18.425281820333435 18.969144169865125 37.626800530290616 24.97877347951082 50 16.75264855667936 19.259943362843575 34.137044705617534 29.850363374859523 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5658.0 1 4627.5 2 3597.0 3 15765.5 4 27934.0 5 18099.5 6 8265.0 7 7656.5 8 7048.0 9 6964.0 10 6880.0 11 6620.5 12 6361.0 13 6203.0 14 6045.0 15 5552.5 16 5060.0 17 4710.0 18 4360.0 19 4071.5 20 3783.0 21 3486.0 22 3189.0 23 2954.5 24 2720.0 25 2725.5 26 2731.0 27 3018.0 28 3305.0 29 3304.0 30 3303.0 31 4007.5 32 4712.0 33 5346.5 34 5981.0 35 7441.0 36 8901.0 37 10419.5 38 11938.0 39 13984.5 40 16031.0 41 19409.5 42 22788.0 43 28364.0 44 33940.0 45 80390.5 46 126841.0 47 104023.5 48 81206.0 49 69145.0 50 57084.0 51 46638.0 52 36192.0 53 31509.0 54 26826.0 55 24039.5 56 21253.0 57 18694.5 58 16136.0 59 14082.0 60 12028.0 61 9998.5 62 7969.0 63 6563.5 64 5158.0 65 4010.5 66 2863.0 67 2418.0 68 1973.0 69 1712.5 70 1452.0 71 1294.5 72 1137.0 73 955.0 74 773.0 75 571.5 76 370.0 77 280.0 78 190.0 79 136.5 80 83.0 81 69.0 82 55.0 83 48.5 84 42.0 85 30.5 86 19.0 87 11.0 88 3.0 89 5.0 90 7.0 91 5.5 92 4.0 93 2.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 604197.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.92443057647502 #Duplication Level Percentage of deduplicated Percentage of total 1 79.60801247109185 27.802645048778054 2 6.968217071972751 4.867220267438407 3 3.031744681534833 3.176458699675819 4 1.973800387493449 2.7573541841933777 5 1.4144843870353034 2.4700030888261137 6 1.15389171468263 2.417940664932194 7 0.9220165266444112 2.254063152260876 8 0.7354684346303074 2.054865302914794 9 0.6444873813682422 2.0257519327208415 >10 3.3881667503216932 18.52734435194043 >50 0.08269018879971782 2.054870137356475 >100 0.06520712031053114 4.607615572202333 >500 0.0033076075519834634 0.8077890557619862 >1k 0.0047251536456906626 3.3768717973559808 >5k 0.001890061458276265 4.568505049992814 >10k+ 0.001890061458276265 16.230701693649518 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT 36128 5.979506684078206 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC 27640 4.574666871897741 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20580 3.406173814169881 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATG 14006 2.3181180972431177 No Hit GAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC 9524 1.576307065410785 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTC 6773 1.120991994332974 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGT 5785 0.9574691698237495 No Hit GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG 5602 0.9271810353245712 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4557 0.7542242017090452 No Hit GAATGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT 3837 0.6350577708926063 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC 2283 0.37785689104712533 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCAAATGCTCGT 2027 0.3354866045346137 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCAAATGC 1780 0.29460589840730755 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCAAATGCTCG 1364 0.2257541828244761 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1247 0.2063896378168048 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATG 1227 0.20307945918301482 No Hit GAATCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATGCCGTCTT 1094 0.1810667712683115 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCCT 1047 0.17328785147890505 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATGCC 940 0.1555783957881287 No Hit CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT 760 0.12578678808401897 No Hit GAATGATACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCG 754 0.12479373449388197 No Hit CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC 672 0.11122200209534308 Illumina Single End Adapter 1 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCCTC 626 0.10360859123762613 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTA 610 0.10096044833059416 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1444892973649323 0.0 2 0.0 0.0 0.0 1.43926566997188 0.0 3 0.0 0.0 0.0 1.7505879704798268 0.0 4 0.0 0.0 0.0 3.833186857928788 0.0 5 0.0 0.0 0.0 11.470596510740702 0.0 6 0.0 0.0 0.0 12.734422713121713 0.0 7 0.0 0.0 0.0 14.367168324238618 0.0 8 0.0 0.0 0.0 15.898953487024928 0.0 9 0.0 0.0 0.0 16.263735172468582 0.0 10 1.655089316894986E-4 0.0 0.0 21.834765813137107 0.0 11 1.655089316894986E-4 0.0 0.0 22.0886565143488 0.0 12 3.310178633789972E-4 0.0 0.0 25.307474217846167 0.0 13 3.310178633789972E-4 0.0 0.0 25.537035106099502 0.0 14 3.310178633789972E-4 0.0 0.0 25.772554315893657 0.0 15 4.965267950684959E-4 0.0 0.0 26.417046095892566 0.0 16 4.965267950684959E-4 0.0 0.0 26.84405913965147 0.0 17 4.965267950684959E-4 0.0 0.0 27.030753214597226 0.0 18 4.965267950684959E-4 0.0 0.0 27.14826455609677 0.0 19 8.275446584474931E-4 0.0 0.0 27.859290926634856 0.0 20 9.930535901369918E-4 0.0 0.0 28.019503572510292 0.0 21 0.0011585625218264904 0.0 0.0 28.093320556043807 0.0 22 0.0011585625218264904 0.0 0.0 28.32701916758938 0.0 23 0.0013240714535159889 0.0 0.0 28.461246911189562 0.0 24 0.0013240714535159889 0.0 0.0 28.84787577561623 0.0 25 0.0013240714535159889 0.0 0.0 28.96737322429605 0.0 26 0.0013240714535159889 0.0 0.0 29.31378341832217 0.0 27 0.0013240714535159889 0.0 0.0 30.01338967257368 0.0 28 0.0014895803852054876 0.0 0.0 30.149438014422447 0.0 29 0.0014895803852054876 0.0 0.0 30.38578476887505 0.0 30 0.0014895803852054876 0.0 0.0 30.500482458535874 0.0 31 0.0014895803852054876 0.0 0.0 30.65026804171487 0.0 32 0.0014895803852054876 0.0 0.0 30.90448976078994 0.0 33 0.0014895803852054876 0.0 0.0 30.985092610522727 0.0 34 0.0014895803852054876 0.0 0.0 31.204391945011313 0.0 35 0.0014895803852054876 0.0 0.0 31.296580419962364 0.0 36 0.0014895803852054876 0.0 0.0 31.366094171271953 0.0 37 0.0014895803852054876 0.0 0.0 31.454475940794143 0.0 38 0.0014895803852054876 0.0 0.0 31.544181781769854 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGGGA 20 7.853513E-4 44.0 4 CCGATTC 20 7.853513E-4 44.0 40 CAACGAT 30 2.525716E-6 44.0 16 TAGACGG 35 1.4445504E-7 44.0 2 ACCGCGT 35 1.4445504E-7 44.0 30 CCGTGTA 60 0.0 44.0 31 GGATCGA 20 7.853513E-4 44.0 8 CCAGCGC 25 4.440325E-5 44.0 19 CCTCGTA 20 7.853513E-4 44.0 40 ATACTCC 20 7.853513E-4 44.0 28 AGCGGGT 35 1.4445504E-7 44.0 4 ATATCGC 20 7.853513E-4 44.0 28 GGAACTA 25 4.440325E-5 44.0 8 GCGGGAT 25 4.440325E-5 44.0 5 AGCGCAG 40 8.301868E-9 44.0 1 GCCTCAC 25 4.440325E-5 44.0 9 CGGGATC 25 4.440325E-5 44.0 6 TCCAATC 20 7.853513E-4 44.0 23 CGTGTTT 30 2.525716E-6 44.0 1 CGGTCTA 55 1.8189894E-12 44.0 31 >>END_MODULE