##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546146_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 472532 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.318291671251895 16.0 16.0 28.0 16.0 31.0 2 21.429651325201256 16.0 16.0 30.0 10.0 31.0 3 22.190048504651536 25.0 16.0 30.0 10.0 31.0 4 26.754257912691628 28.0 19.0 33.0 19.0 35.0 5 30.72179450280616 32.0 28.0 35.0 19.0 35.0 6 31.237080240068398 33.0 30.0 35.0 23.0 35.0 7 30.00287599569976 32.0 28.0 35.0 17.0 35.0 8 30.364180626920504 32.0 28.0 35.0 17.0 35.0 9 23.197326318640854 19.0 17.0 31.0 16.0 35.0 10 25.114542507174118 27.0 17.0 34.0 17.0 37.0 11 27.464368550701327 30.0 17.0 35.0 17.0 39.0 12 27.135832070632254 29.0 17.0 37.0 15.0 39.0 13 28.13280370429939 31.0 17.0 37.0 15.0 39.0 14 30.92502095096205 32.0 27.0 37.0 17.0 40.0 15 28.19318268392405 30.0 17.0 36.0 17.0 40.0 16 29.2316858964049 31.0 25.0 36.0 17.0 39.0 17 27.603620495543158 30.0 17.0 36.0 16.0 39.0 18 27.974935030855054 31.0 17.0 36.0 16.0 39.0 19 26.841995885992905 30.0 18.0 36.0 10.0 38.0 20 26.771939254907604 30.0 18.0 35.0 10.0 38.0 21 29.01289648108488 32.0 25.0 36.0 15.0 38.0 22 30.664767677109698 33.0 27.0 36.0 15.0 38.0 23 30.943938188313172 34.0 27.0 37.0 18.0 39.0 24 31.953046566158484 35.0 30.0 37.0 19.0 39.0 25 31.891698340006602 34.0 30.0 37.0 21.0 39.0 26 25.375125917398186 32.0 15.0 36.0 0.0 38.0 27 27.918629849407026 32.0 18.0 36.0 10.0 39.0 28 29.023448147427054 33.0 24.0 36.0 13.0 39.0 29 29.747995902922977 33.0 25.0 36.0 14.0 38.0 30 29.735137514496373 33.0 25.0 36.0 11.0 38.0 31 28.168773755004953 32.0 23.0 36.0 9.0 38.0 32 27.74913445015364 32.0 21.0 36.0 8.0 38.0 33 28.000649691449468 32.0 23.0 36.0 9.0 38.0 34 27.20972124639178 31.0 19.0 36.0 8.0 38.0 35 26.89833281132283 32.0 18.0 36.0 7.0 38.0 36 27.482041427882134 32.0 20.0 36.0 8.0 39.0 37 27.207006086360288 32.0 18.0 36.0 8.0 39.0 38 26.50625566099227 31.0 18.0 36.0 8.0 38.0 39 25.90177384812034 30.0 16.0 35.0 8.0 38.0 40 25.895820812135476 30.0 16.0 35.0 8.0 38.0 41 25.02750713179213 29.0 15.0 35.0 8.0 38.0 42 25.01592273115895 29.0 15.0 35.0 7.0 38.0 43 25.71391355506082 30.0 15.0 35.0 7.0 38.0 44 26.278082754183842 31.0 18.0 35.0 7.0 38.0 45 25.666710402681723 30.0 15.0 35.0 7.0 38.0 46 24.574090220344864 28.0 14.0 34.0 7.0 37.0 47 24.828100530757705 29.0 15.0 34.0 7.0 37.0 48 25.203802070547603 29.0 16.0 34.0 7.0 37.0 49 24.819550845233763 28.0 15.0 34.0 7.0 37.0 50 26.122186433934633 30.0 17.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores warn #Quality Count 11 7.0 12 42.0 13 181.0 14 851.0 15 2515.0 16 5239.0 17 8536.0 18 11639.0 19 14120.0 20 15476.0 21 17277.0 22 19474.0 23 23185.0 24 27769.0 25 33249.0 26 37285.0 27 37949.0 28 36500.0 29 33468.0 30 30187.0 31 28228.0 32 25650.0 33 23147.0 34 19612.0 35 13852.0 36 6009.0 37 1060.0 38 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 57.75820473534068 11.525568638737695 9.95297672961831 20.763249896303318 2 25.72418375898352 56.163180483014905 10.745727273496822 7.366908484504753 3 11.860784031557651 54.14977186730211 27.178053549812496 6.811390551327741 4 12.718715346262263 10.881379462131665 67.12921029686878 9.270694894737288 5 44.201450907028516 12.981131436601121 28.82111687674062 13.996300779629738 6 10.361837928436593 50.54514826509104 31.732242472467476 7.360771334004893 7 31.710445006899 4.349123445607916 59.60061964057461 4.339811906918474 8 28.873600094808396 35.25221572295633 27.074356868952794 8.799827313282487 9 21.674722558472233 2.8736678150897714 15.9163823825688 59.535227243869194 10 37.760828896244064 11.963634208900139 33.08961086233314 17.185926032522666 11 36.182311462504124 13.232966232974697 33.862468573556924 16.72225373096425 12 15.243623712256523 11.120939957505524 39.62906215875327 34.00637417148468 13 28.188567123496398 17.174921486798777 44.04929189980785 10.587219489896981 14 11.37912353025827 40.43916602473484 30.85632295802189 17.325387486985008 15 5.703317447283993 13.915882945493637 34.97604395046262 45.404755656759754 16 6.319572007821693 15.488263228733715 25.662389002226305 52.52977576121829 17 7.602448088171807 29.73428254594398 37.04701480534652 25.616254560537698 18 7.286279024489346 22.153420297461334 33.37826856170587 37.18203211634344 19 9.090178019689672 23.41830817807048 29.79544242506328 37.69607137717657 20 16.811983103789796 22.693912793207655 40.64486637941981 19.849237723582743 21 13.34216518669635 34.55173406245503 33.763639287921244 18.34246146292738 22 8.527888058374883 17.415540111569165 46.7079478215232 27.348624008532756 23 21.74011495517764 25.621121955761726 37.71702233922782 14.921740749832816 24 18.145861021052543 28.419662583698035 30.760668060575792 22.67380833467363 25 10.542143177604903 42.89995174929952 28.724615475777306 17.833289597318277 26 10.600763546172534 29.409860072968602 37.24594313189371 22.74343324896515 27 23.200756774144395 21.720433748402222 29.634395130911766 25.44441434654161 28 9.1792725148773 28.608644493917872 37.301812364030376 24.910270627174455 29 16.90065434721881 17.30634115784751 37.01273141289902 28.780273082034658 30 9.29989926608145 35.259622628732025 32.57387859446556 22.866599510720967 31 14.985016887745168 22.95400099887415 26.366045050917187 35.694937062463495 32 21.98814048572372 31.11514140841255 26.222774330627345 20.673943775236385 33 17.06360627428407 24.591773678819635 27.532526897649262 30.812093149247033 34 17.19989334055683 19.40482337704113 33.74882547636985 29.646457806032185 35 21.62837649090432 19.432123115471544 27.69611370235243 31.243386691271702 36 13.969212667078631 26.464451084794256 26.394402918744124 33.17193332938299 37 11.731480619301973 21.932271253587057 34.639135550608216 31.697112576502757 38 15.036230350537105 28.530342918574824 21.055928487382864 35.3774982435052 39 16.51274411045178 23.520946729533662 33.16791243767618 26.79839672233838 40 17.195237571212107 23.961551810247773 31.144134153877413 27.69907646466271 41 12.247847764807462 21.355167480720883 29.651536827135516 36.74544792733614 42 19.567775304106387 19.56100327596861 35.99650394047387 24.874717479451128 43 19.951876275045922 21.35728373951394 23.78082330932085 34.91001667611929 44 16.825315534186043 17.77742036518162 32.01666765425411 33.380596446378235 45 18.14310988462157 17.81572464933592 29.774703088891336 34.26646237715117 46 26.639042435221317 21.88529030838123 24.814404103849053 26.661263152548397 47 11.788196354955854 22.16886898665064 40.40001523706331 25.642919421330195 48 17.72472552123454 20.112288691559513 28.73942928732869 33.42355649987726 49 17.117570873506978 15.939026351654492 37.66136473297046 29.282038041868063 50 16.42322636350554 15.848873727070337 33.0386090254205 34.68929088400362 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2765.0 1 2679.0 2 2593.0 3 9088.5 4 15584.0 5 11851.5 6 8119.0 7 7352.5 8 6586.0 9 6624.0 10 6662.0 11 6479.0 12 6296.0 13 6149.0 14 6002.0 15 5748.5 16 5495.0 17 5217.5 18 4940.0 19 4670.0 20 4400.0 21 4020.0 22 3640.0 23 3417.0 24 3194.0 25 3030.0 26 2866.0 27 2881.5 28 2897.0 29 2840.5 30 2784.0 31 3102.0 32 3420.0 33 3525.5 34 3631.0 35 4027.0 36 4423.0 37 4903.5 38 5384.0 39 6212.0 40 7040.0 41 9031.0 42 11022.0 43 15771.0 44 20520.0 45 32505.5 46 44491.0 47 53890.5 48 63290.0 49 60058.0 50 56826.0 51 51885.5 52 46945.0 53 40053.0 54 33161.0 55 27362.5 56 21564.0 57 18952.5 58 16341.0 59 14562.5 60 12784.0 61 11310.0 62 9836.0 63 8770.0 64 7704.0 65 6412.5 66 5121.0 67 4464.5 68 3808.0 69 3341.5 70 2875.0 71 2565.5 72 2256.0 73 1927.0 74 1598.0 75 1380.5 76 1163.0 77 971.5 78 780.0 79 722.0 80 664.0 81 549.5 82 435.0 83 368.5 84 302.0 85 243.5 86 185.0 87 136.0 88 87.0 89 60.0 90 33.0 91 21.5 92 10.0 93 8.0 94 6.0 95 5.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 472532.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.668511606013915 #Duplication Level Percentage of deduplicated Percentage of total 1 87.72171200874773 46.20172007032139 2 5.834280110127925 6.145656993860174 3 2.1432406213017035 3.386438806125277 4 1.1894575090904453 2.5058782648956206 5 0.6778242199620194 1.784999639795347 6 0.5116361277989506 1.6168268001021027 7 0.3611196725979469 1.3313744967169436 8 0.2687617900707348 1.1324226767674856 9 0.18923041354759976 0.8969835808928314 >10 0.9594550009536693 8.801037125259475 >50 0.0753657322257825 2.809274283266301 >100 0.05082805196617677 5.151913176669086 >500 0.006572592926660789 2.3347924031697342 >1k 0.008325284373770331 8.216198392571798 >5k 0.0021908643088869293 7.684483289586419 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9388 1.9867437549203018 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCCCAAATGCTCGTATG 6668 1.411121363209264 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC 5877 1.243725292678591 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT 5741 1.214944173093039 No Hit GAATGATACCTGTCCCTTATACACATCTGACGCCCAAATGCTCGTATGCC 5624 1.1901839452142924 No Hit GAATCTTTCTCTTACCCACATCTGACGCCCAAATGCTCGTATGCCGTCTT 4258 0.9011029940829405 No Hit GAACTGTCCCTTATCCACATCTGACGCCCAAATGCTCGTATGCCGTCTTC 3846 0.8139131318090626 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATG 2548 0.5392227404704866 No Hit GAACTGTCCCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC 2341 0.49541618345424226 No Hit GAATCTGTCTCTTACCCACATCTGACGCCCAAATGCTCGTATGCCGTCTT 2303 0.4873744000406322 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2165 0.4581700286964693 No Hit GAATGACTCTCTCTCCTACACATCTGACGCCCAAATGCTCGTATGCCGTC 1921 0.4065333141459203 No Hit GCTGTCTCCTATACCCATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG 1896 0.4012426671632821 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCCCCAATGCTCGTATG 1762 0.3728847993363412 No Hit GAATGACTCTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTC 1632 0.34537343502662254 No Hit GAATGATACCTGGCCCTTATACACATCTGACGCCCAAATGCTCGTATGCC 1449 0.3066458991137108 No Hit GAATGATCCGTCTCCCATACACATCTGACGCCCAAATGCTCGTATGCCGT 1392 0.2945832239932957 No Hit GAATGCTGCCTCTTCCACACATCTGACGCCCAAATGCTCGTATGCCGTCT 1366 0.28908095113135196 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATGCC 1343 0.2842135559073248 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCCT 1133 0.2397721212531638 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATG 1092 0.23109546020163713 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCAAATGC 1089 0.23046058256372057 No Hit GAATCTTTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT 1035 0.21903278508122204 No Hit GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG 1031 0.21818628156399988 No Hit GCTGTCTCCTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG 892 0.18877028434053145 No Hit GAATCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATGCCGTCTT 817 0.17289834339261678 No Hit GAATCTTTCTCTTACCCCCATCTGACGCCCAAATGCTCGTATGCCGTCTT 767 0.16231704942734038 No Hit CGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 764 0.1616821717894238 No Hit GAATGATACGGCGACCGTCTCTTATACACATCTGACGCCCCAATGCTCGT 724 0.15321713661720265 No Hit GAATGCTGCCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT 714 0.15110087782414736 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCAAATGCTCG 673 0.14242421677262068 No Hit GAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC 670 0.1417893391347041 No Hit GAACTGTCCCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCCTC 670 0.1417893391347041 No Hit GAATCTTTCTCTTACCCACATCTGACGCCCCAATGCTCGTATGCCGTCTT 663 0.1403079579795654 No Hit GAATGATACGGCGACCGTCTCTTATACACATCTGACGCCCAAATGCTCGT 589 0.1246476429109563 No Hit GAATGATCCGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGT 574 0.12147325472137335 No Hit GAACTGTCCCTTATCCACATCTGACGCCCACATGCTCGTATGCCGTCTTC 547 0.11575935598012409 No Hit GAATCTGTCTCTTATACACATCTGACGCCCCAATGCTCGTATGCCGTCCT 536 0.11343147130776328 No Hit GAATCTGTCTCTTACACACATCTGACGCCCAAATGCTCGTATGCCGTCTT 517 0.10941057960095824 No Hit GAATGATACCTGTCCCTTATACACATCTGACGCCCCAATGCTCGTATGCC 500 0.10581293965276427 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1098338313595693 0.0 2 0.0 0.0 0.0 0.7375161893797668 0.0 3 0.0 0.0 0.0 1.3486917288141331 0.0 4 0.0 0.0 0.0 1.7643249557701912 0.0 5 0.0 0.0 0.0 5.612953196820532 0.0 6 0.0 0.0 0.0 5.829658097229394 0.0 7 0.0 0.0 0.0 6.012502856949371 0.0 8 0.0 0.0 0.0 6.222012477461844 0.0 9 0.0 0.0 0.0 6.506860911007085 0.0 10 0.0 0.0 0.0 9.698814048572372 0.0 11 0.0 0.0 0.0 9.893721483412763 0.0 12 0.0 0.0 0.0 11.76428263059433 0.0 13 0.0 0.0 0.0 11.867132807936818 0.0 14 0.0 0.0 0.0 11.962999331262221 0.0 15 0.0 0.0 0.0 12.227954932152743 0.0 16 0.0 0.0 0.0 12.676601796280464 0.0 17 0.0 0.0 0.0 12.840188600983637 0.0 18 0.0 0.0 0.0 12.961873481584316 0.0 19 0.0 0.0 0.0 13.865304360339618 0.0 20 0.0 0.0 0.0 14.056190903473205 0.0 21 0.0 0.0 0.0 14.138513370523054 0.0 22 0.0 0.0 0.0 14.346118358121778 0.0 23 0.0 0.0 0.0 14.46674510932593 0.0 24 0.0 0.0 0.0 14.817620817214495 0.0 25 0.0 0.0 0.0 14.91391059229851 0.0 26 0.0 0.0 0.0 15.258860775566523 0.0 27 0.0 0.0 0.0 16.060499606375863 0.0 28 0.0 0.0 0.0 16.211388858320706 0.0 29 0.0 0.0 0.0 16.4598376406254 0.0 30 0.0 0.0 0.0 16.581522521226077 0.0 31 0.0 0.0 0.0 16.72606299679175 0.0 32 0.0 0.0 0.0 16.97091413914825 0.0 33 0.0 0.0 0.0 17.04075067931907 0.0 34 0.0 0.0 0.0 17.26570898902085 0.0 35 0.0 0.0 0.0 17.345280319639727 0.0 36 0.0 0.0 0.0 17.405170443483193 0.0 37 0.0 0.0 0.0 17.481567385912488 0.0 38 0.0 0.0 0.0 17.559445709496924 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.851768E-4 44.000004 25 GGTAATT 20 7.851768E-4 44.000004 8 ACCGCGT 40 8.294592E-9 44.000004 30 CGGTTTT 40 8.294592E-9 44.000004 1 TACGGAT 20 7.851768E-4 44.000004 7 GACCACG 20 7.851768E-4 44.000004 13 TGCGCGC 20 7.851768E-4 44.000004 15 TACGAGG 20 7.851768E-4 44.000004 2 CGGGCTT 20 7.851768E-4 44.000004 6 ACTACTA 20 7.851768E-4 44.000004 35 CGGGATC 20 7.851768E-4 44.000004 6 AGATTGG 20 7.851768E-4 44.000004 2 CTCGACC 20 7.851768E-4 44.000004 32 TCGACGG 20 7.851768E-4 44.000004 2 ATCGCTA 20 7.851768E-4 44.000004 13 GCATCGC 20 7.851768E-4 44.000004 22 TCGCCTA 25 4.438849E-5 44.0 30 CACGGGA 25 4.438849E-5 44.0 4 CGACGGT 25 4.438849E-5 44.0 28 CGCGCCT 25 4.438849E-5 44.0 17 >>END_MODULE