##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546144_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 553101 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.298489787579484 30.0 28.0 31.0 23.0 33.0 2 28.026430977344102 30.0 27.0 31.0 16.0 33.0 3 27.766200024950233 30.0 26.0 31.0 16.0 33.0 4 32.38812802725 35.0 32.0 35.0 28.0 35.0 5 33.32771410646519 35.0 33.0 35.0 28.0 37.0 6 33.5255477751803 35.0 33.0 35.0 29.0 37.0 7 33.61194610026017 35.0 33.0 35.0 30.0 37.0 8 33.0482027694761 35.0 32.0 35.0 28.0 37.0 9 33.75045064102216 35.0 32.0 39.0 27.0 39.0 10 34.430035382326196 35.0 33.0 39.0 28.0 39.0 11 34.49021426466414 37.0 33.0 39.0 27.0 39.0 12 33.93227819150571 35.0 32.0 39.0 27.0 39.0 13 33.41679006185127 35.0 31.0 39.0 25.0 39.0 14 35.516319804158734 37.0 34.0 40.0 27.0 41.0 15 34.91179368686732 37.0 32.0 40.0 27.0 41.0 16 35.240196636780624 36.0 33.0 40.0 27.0 41.0 17 34.40305116063793 36.0 32.0 39.0 25.0 41.0 18 34.04812321800178 36.0 32.0 39.0 26.0 40.0 19 32.90592314965983 35.0 31.0 37.0 24.0 40.0 20 32.45069526180571 35.0 30.0 37.0 23.0 39.0 21 33.45121415437687 35.0 31.0 38.0 25.0 40.0 22 33.915478366518954 35.0 32.0 38.0 26.0 40.0 23 34.023124167195505 35.0 32.0 38.0 26.0 40.0 24 34.327636362978915 35.0 33.0 39.0 25.0 40.0 25 34.610120032326826 35.0 33.0 39.0 27.0 40.0 26 33.71737892356008 35.0 33.0 38.0 24.0 40.0 27 33.6833905561552 35.0 33.0 39.0 24.0 40.0 28 33.62627982954289 35.0 33.0 39.0 23.0 40.0 29 33.495625572906214 35.0 33.0 38.0 24.0 40.0 30 33.450402367741155 35.0 33.0 39.0 22.0 40.0 31 32.97092032015853 35.0 32.0 38.0 22.0 40.0 32 32.65361660890145 35.0 32.0 39.0 16.0 40.0 33 32.11456135497857 35.0 31.0 38.0 15.0 40.0 34 31.18616491382225 35.0 30.0 38.0 9.0 40.0 35 30.89615639819852 35.0 29.0 38.0 8.0 40.0 36 30.91358721101571 35.0 28.0 38.0 10.0 40.0 37 30.668046161550965 35.0 27.0 38.0 8.0 40.0 38 30.76290406272995 35.0 27.0 39.0 10.0 40.0 39 30.467198576751805 35.0 27.0 38.0 8.0 40.0 40 30.07885359093547 35.0 25.0 38.0 8.0 40.0 41 29.444911508024756 34.0 24.0 37.0 8.0 40.0 42 29.335584278459088 34.0 23.0 38.0 8.0 40.0 43 29.57558746051806 35.0 24.0 38.0 7.0 40.0 44 30.037202970162774 35.0 25.0 38.0 8.0 40.0 45 29.97333398420903 35.0 24.0 38.0 8.0 40.0 46 29.40770130590977 34.0 23.0 38.0 7.0 40.0 47 29.502127097944136 34.0 24.0 37.0 8.0 40.0 48 29.605339711915185 35.0 24.0 38.0 7.0 40.0 49 29.44028305860955 34.0 24.0 38.0 7.0 40.0 50 29.384061862119214 34.0 23.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 3.0 13 5.0 14 28.0 15 126.0 16 434.0 17 1333.0 18 3058.0 19 4027.0 20 5227.0 21 6923.0 22 9040.0 23 11316.0 24 14420.0 25 17726.0 26 21211.0 27 22835.0 28 22147.0 29 22552.0 30 25883.0 31 32113.0 32 39010.0 33 47267.0 34 59030.0 35 61295.0 36 47486.0 37 42004.0 38 31517.0 39 5083.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 53.26133924907024 13.797480026251987 10.578899694630818 22.362281030046955 2 27.141155051247424 54.01563186470464 11.144619156356615 7.698593927691326 3 12.208258527827647 52.97459234389379 27.468762486417493 7.348386641861071 4 12.257074205253652 14.866181764270902 63.47719494269582 9.399549087779627 5 38.83214819716471 16.35361353532176 28.69710956949996 16.117128698013563 6 10.954780410811045 47.75493083541704 33.4069184470829 7.883370306689014 7 33.116736364606105 9.62952516809769 51.83248629093059 5.421252176365619 8 25.36155241086167 35.30693309178613 30.187072523824764 9.144441973527439 9 24.793663363472493 9.55684404837453 26.410185481494334 39.239307106658636 10 35.59729597306821 15.018775955928485 33.55463107099788 15.829297000005424 11 33.148556954335646 15.440760367455491 33.56764858497815 17.84303409323071 12 18.096514018235368 13.833458988503002 39.16481799888266 28.905208994378967 13 24.23662224440021 20.82784156962291 45.75077607887167 9.184760107105213 14 11.564433982220246 42.511042287032566 29.661671195676735 16.26285253507045 15 7.0386782884138706 19.45160106382017 50.53073489290383 22.978985754862133 16 7.445114002686671 23.511799834026696 32.15199393962405 36.89109222366259 17 7.7513871788335225 31.185624325394457 37.834500389621425 23.228488106150593 18 8.522313284553816 25.412537673951054 35.6403260887252 30.424822952769926 19 9.91753766491111 26.108793873090086 29.81426538733432 34.15940307466448 20 20.71429991990613 25.04985527055637 39.72764467972396 14.508200129813542 21 12.666221901605674 38.492608040846065 34.70378827736707 14.137381780181196 22 9.508932364974934 18.715388328713924 43.352841524423205 28.42283778188794 23 20.99634605614526 29.294288023344745 36.61555484441359 13.09381107609641 24 18.60148508138658 29.856029911354348 30.536918212044455 21.005566795214616 25 10.482172333805218 45.712446732151996 28.748275631394627 15.05710530264816 26 11.57220833084735 20.376025355224453 43.71823590989711 24.33353040403109 27 27.103910497359436 25.075709499711625 28.306764948897218 19.51361505403172 28 9.24008454152135 31.274758136398233 40.12702924059078 19.358128081489635 29 17.74992270851074 28.201178446612822 38.015299194902916 16.033599649973514 30 9.958036597294164 44.693103067974924 33.74862818906493 11.60023214566598 31 18.185647829239144 19.300995659020685 33.297535169887595 29.21582134185257 32 33.83505001798948 28.376914885346437 26.613945735046585 11.174089361617497 33 22.03865116859308 26.754426406750305 25.60798118246035 25.598941242196272 34 16.579069645507783 27.11819360297667 27.77847083986469 28.524265911650854 35 19.830916957300744 34.2872278299985 26.40584631016758 19.476008902533174 36 23.235539259556575 30.80576603549804 30.58898826796553 15.369706436979863 37 17.76854498545474 27.199191467742782 35.32862894841991 19.703634598382575 38 14.830564399630447 30.7260337623689 26.39644477229294 28.046957065707712 39 24.988022079150102 22.938486822479078 26.74520566768095 25.328285430689874 40 12.427025082218258 33.23660597250773 32.98800761524568 21.348361330028332 41 18.10645795252585 26.118557008575287 25.663305616876485 30.11167942202238 42 15.568042726373665 26.22052753475405 38.82238506167951 19.389044677192775 43 26.374025720438038 23.566039475611145 24.842117443287933 25.21781736066288 44 17.690801499183692 21.946443777899518 31.64196050992495 28.72079421299184 45 16.311125816080608 20.977362181590703 31.665283555806262 31.046228446522427 46 31.176945982740946 26.465690714715755 24.58013997443505 17.77722332810825 47 13.002146081818692 24.98042852932828 42.28450138401485 19.732924004838175 48 19.133756764135303 23.813010643625667 27.265002232865243 29.788230359373784 49 16.41942430044422 20.10139197000186 40.15469145779885 23.32449227175507 50 17.891488173046152 20.374759763587484 35.37455184496141 26.359200218404954 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 11876.0 1 8511.5 2 5147.0 3 19265.0 4 33383.0 5 20815.0 6 8247.0 7 7794.5 8 7342.0 9 7415.5 10 7489.0 11 7233.0 12 6977.0 13 6633.0 14 6289.0 15 5755.0 16 5221.0 17 4774.5 18 4328.0 19 3917.0 20 3506.0 21 3199.0 22 2892.0 23 2616.5 24 2341.0 25 2392.5 26 2444.0 27 2544.0 28 2644.0 29 2645.5 30 2647.0 31 3012.5 32 3378.0 33 4003.0 34 4628.0 35 5623.5 36 6619.0 37 7489.5 38 8360.0 39 10172.5 40 11985.0 41 16715.0 42 21445.0 43 74234.0 44 127023.0 45 97309.0 46 67595.0 47 57734.5 48 47874.0 49 40754.0 50 33634.0 51 30441.5 52 27249.0 53 23989.5 54 20730.0 55 18352.5 56 15975.0 57 14461.0 58 12947.0 59 11457.0 60 9967.0 61 8550.5 62 7134.0 63 5943.5 64 4753.0 65 3855.0 66 2957.0 67 2484.0 68 2011.0 69 1729.0 70 1447.0 71 1333.0 72 1219.0 73 959.0 74 699.0 75 521.0 76 343.0 77 239.5 78 136.0 79 125.5 80 115.0 81 78.0 82 41.0 83 34.5 84 28.0 85 19.0 86 10.0 87 9.5 88 9.0 89 9.0 90 9.0 91 6.5 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 553101.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.476995015381586 #Duplication Level Percentage of deduplicated Percentage of total 1 79.30514271302694 23.3767729644602 2 6.733264457767005 3.969528057176879 3 3.083380264957034 2.726663541019933 4 2.0720792114836493 2.443146743535173 5 1.4810285074726057 2.182813496620401 6 1.1936088374414642 2.111040105094647 7 0.8881415323166979 1.8325820464736866 8 0.7782951496618887 1.8353441797663326 9 0.628690529003601 1.6678716830691083 >10 3.6116608928021496 18.544124751181727 >50 0.11296790805555168 2.3058124896002066 >100 0.09639109546044355 5.247573891252459 >500 0.0055256041983693755 1.1819528584552979 >1k 0.004297692154287292 2.8737145061111122 >5k 0.0018418680661231252 3.1529601439302097 >10k+ 0.0036837361322462504 24.548098542252635 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT 39197 7.086770770618747 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCC 28644 5.178800978483134 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26190 4.735120710322346 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATG 21159 3.825521920951146 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10408 1.8817539653697968 No Hit GAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC 10045 1.8161239990526143 No Hit GAATGACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTC 6101 1.1030535110223993 No Hit GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG 5908 1.0681593416030706 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGT 5413 0.9786639329887308 No Hit GAATGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCT 2969 0.5367916528807578 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGACAGTCGT 2655 0.4800208280223684 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGACAG 2569 0.4644721307681599 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCAATGACAGTCGTATGCC 2358 0.42632358285376454 No Hit GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCCT 2109 0.3813046803386723 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAATGACAGTCG 1613 0.291628472919051 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1606 0.2903628812820805 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCTATACACATCTGACGC 980 0.1771828291758648 No Hit CGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT 896 0.16199572953221925 No Hit CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 813 0.1469894286938552 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTA 805 0.14554303825160322 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTAT 763 0.13794948842978044 No Hit GAATGATACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCG 656 0.11860401626466051 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 595 0.10757528914248934 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17971401244980573 0.0 2 0.0 0.0 0.0 1.6214036857644445 0.0 3 0.0 0.0 0.0 1.9247840810267927 0.0 4 0.0 0.0 0.0 4.179706780497594 0.0 5 0.0 0.0 0.0 12.79748183424004 0.0 6 0.0 0.0 0.0 13.750472336878797 0.0 7 0.0 0.0 0.0 15.257068781289494 0.0 8 0.0 0.0 0.0 16.659344315052767 0.0 9 0.0 0.0 0.0 16.92349136956903 0.0 10 0.0 0.0 0.0 22.65246311252375 0.0 11 1.807988052814947E-4 0.0 0.0 22.860743336208035 0.0 12 1.807988052814947E-4 0.0 0.0 27.35992160563803 0.0 13 1.807988052814947E-4 0.0 0.0 27.642690937098287 0.0 14 1.807988052814947E-4 0.0 0.0 27.92094029842651 0.0 15 1.807988052814947E-4 0.0 0.0 28.5951390433212 0.0 16 1.807988052814947E-4 0.0 0.0 29.04984803860416 0.0 17 1.807988052814947E-4 0.0 0.0 29.20461181592512 0.0 18 1.807988052814947E-4 0.0 0.0 29.321046246526404 0.0 19 1.807988052814947E-4 0.0 0.0 30.091068358220287 0.0 20 1.807988052814947E-4 0.0 0.0 30.218169918333178 0.0 21 1.807988052814947E-4 0.0 0.0 30.281630298986983 0.0 22 1.807988052814947E-4 0.0 0.0 30.500216054572313 0.0 23 1.807988052814947E-4 0.0 0.0 30.5765131504011 0.0 24 1.807988052814947E-4 0.0 0.0 30.83523624075892 0.0 25 3.615976105629894E-4 0.0 0.0 30.914606916277496 0.0 26 5.423964158444841E-4 0.0 0.0 31.24420313830566 0.0 27 7.231952211259788E-4 0.0 0.0 31.645214888420018 0.0 28 7.231952211259788E-4 0.0 0.0 31.729286332875912 0.0 29 7.231952211259788E-4 0.0 0.0 31.834692036355023 0.0 30 7.231952211259788E-4 0.0 0.0 31.901587594309177 0.0 31 9.039940264074735E-4 0.0 0.0 31.998134156329495 0.0 32 9.039940264074735E-4 0.0 0.0 32.13590284595399 0.0 33 9.039940264074735E-4 0.0 0.0 32.19719364094442 0.0 34 9.039940264074735E-4 0.0 0.0 32.33478153176364 0.0 35 9.039940264074735E-4 0.0 0.0 32.406739456265676 0.0 36 9.039940264074735E-4 0.0 0.0 32.45953270740787 0.0 37 0.0010847928316889681 0.0 0.0 32.518111520319074 0.0 38 0.0010847928316889681 0.0 0.0 32.57072397265599 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATGC 30 2.5253266E-6 44.0 8 ACCGGGC 100 0.0 44.0 30 GGGTACA 20 7.852935E-4 44.0 7 CAACCGA 30 2.5253266E-6 44.0 41 CCTACGC 20 7.852935E-4 44.0 40 CGCTGTA 20 7.852935E-4 44.0 34 CCTAACA 30 2.5253266E-6 44.0 27 ACGGGTA 20 7.852935E-4 44.0 5 TAGCCGT 25 4.439836E-5 44.0 44 ACGGGCT 45 4.783942E-10 44.0 5 AGCGGGA 50 2.7284841E-11 44.0 4 TCGGACC 20 7.852935E-4 44.0 15 TACTGTT 45 4.783942E-10 44.0 29 CTCGGAC 20 7.852935E-4 44.0 14 TAACAAG 20 7.852935E-4 44.0 37 TGTTCCC 20 7.852935E-4 44.0 14 CGGTGTA 30 2.5253266E-6 44.0 31 CACAGCG 20 7.852935E-4 44.0 20 ACTCGCC 20 7.852935E-4 44.0 23 TCATACG 30 2.5253266E-6 44.0 26 >>END_MODULE