##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546143_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 550763 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.1857296150976 30.0 28.0 31.0 16.0 33.0 2 27.946138357151806 30.0 27.0 31.0 16.0 33.0 3 27.740354744236633 30.0 26.0 31.0 16.0 33.0 4 32.379500801615215 35.0 32.0 35.0 28.0 35.0 5 33.325711785286956 35.0 33.0 35.0 28.0 37.0 6 33.517567447341236 35.0 33.0 35.0 29.0 37.0 7 33.54806150739974 35.0 33.0 35.0 30.0 37.0 8 33.01709446713014 35.0 32.0 35.0 28.0 37.0 9 33.651519800712826 35.0 32.0 39.0 27.0 39.0 10 34.41136024024853 35.0 32.0 39.0 28.0 39.0 11 34.477092687780406 37.0 33.0 39.0 27.0 39.0 12 34.051517621917235 35.0 32.0 39.0 27.0 39.0 13 33.45065845018638 35.0 31.0 39.0 25.0 39.0 14 35.54074620117909 37.0 34.0 40.0 29.0 41.0 15 34.84244402764892 37.0 32.0 40.0 27.0 41.0 16 35.153993641548176 36.0 33.0 40.0 27.0 41.0 17 34.29987853214541 36.0 32.0 39.0 25.0 41.0 18 33.95609182170916 36.0 32.0 39.0 25.0 39.0 19 32.755366645907586 35.0 30.0 37.0 23.0 39.0 20 32.39696203267104 35.0 30.0 37.0 23.0 39.0 21 33.59342584741531 35.0 32.0 38.0 25.0 40.0 22 33.89770736233189 35.0 32.0 38.0 26.0 40.0 23 33.97081503296336 35.0 32.0 38.0 25.0 40.0 24 34.29661397007424 35.0 33.0 39.0 25.0 40.0 25 34.63749925103901 35.0 33.0 39.0 27.0 40.0 26 33.67254154690856 35.0 33.0 38.0 24.0 40.0 27 33.63090294736575 35.0 33.0 39.0 24.0 40.0 28 33.553898863939665 35.0 33.0 39.0 23.0 40.0 29 33.41636965446118 35.0 32.0 38.0 23.0 40.0 30 33.351387075747645 35.0 33.0 39.0 22.0 40.0 31 32.88468179598121 35.0 31.0 38.0 21.0 40.0 32 32.55703996092693 35.0 31.0 39.0 16.0 40.0 33 32.002298629356005 35.0 31.0 38.0 15.0 40.0 34 31.075691359078224 35.0 29.0 38.0 9.0 40.0 35 30.75510700609881 35.0 28.0 38.0 8.0 40.0 36 30.835214057589198 35.0 27.0 38.0 10.0 40.0 37 30.631315102866388 35.0 27.0 38.0 8.0 40.0 38 30.677498306894254 35.0 27.0 39.0 9.0 40.0 39 30.376321575704978 35.0 26.0 38.0 8.0 40.0 40 30.036500273257282 35.0 25.0 38.0 8.0 40.0 41 29.46479883361809 34.0 24.0 37.0 8.0 40.0 42 29.329588225788587 34.0 23.0 38.0 8.0 40.0 43 29.54837561709846 35.0 24.0 38.0 7.0 40.0 44 30.030383304615597 35.0 25.0 38.0 8.0 40.0 45 29.992165414161807 35.0 24.0 38.0 8.0 40.0 46 29.459705898907515 35.0 23.0 38.0 7.0 40.0 47 29.567440078581896 34.0 24.0 37.0 8.0 40.0 48 29.617657685792256 35.0 24.0 38.0 7.0 40.0 49 29.527635298667484 35.0 24.0 38.0 7.0 40.0 50 29.389323538436678 34.0 23.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 10.0 14 19.0 15 110.0 16 429.0 17 1304.0 18 2846.0 19 4165.0 20 5619.0 21 7261.0 22 9231.0 23 11702.0 24 14330.0 25 17865.0 26 21348.0 27 22907.0 28 21941.0 29 22615.0 30 25993.0 31 31373.0 32 38711.0 33 46766.0 34 58489.0 35 60553.0 36 46601.0 37 41354.0 38 31548.0 39 5669.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 53.61198918591118 13.681928524610404 10.570789976813984 22.135292312664433 2 26.8133480280992 54.38872981663619 11.14090815831855 7.657013996946055 3 12.219048846781646 53.31785178016679 27.142709296012985 7.3203900770385815 4 12.273518736734312 14.794203677443837 63.49228252442521 9.439995061396644 5 39.17093196166046 16.309374449627153 28.521342210714955 15.998351377997434 6 10.965515112670968 48.07766680042051 33.152735387090274 7.8040826998182515 7 32.85442195644951 9.556742192195191 52.12695841950167 5.461877431853628 8 25.23408435207158 35.693211054482596 29.83243246187562 9.240272131570205 9 24.688477621045713 9.545121949005289 26.220534059114353 39.545866370834645 10 35.95539279145476 15.033689626935724 33.26276456479466 15.748153016814856 11 33.47319990631179 15.441124403781664 33.402025916773646 17.68364977313291 12 18.059310447506462 13.953188576574679 38.949784208452634 29.037716767466225 13 24.667415930264017 20.826562423401718 45.37959158476513 9.126430061569133 14 11.467364365434861 42.75831891394302 29.450235400707747 16.324081319914374 15 7.05112725437257 19.382384074456706 50.10993839455446 23.45655027661626 16 7.482528782797683 23.272260482276405 31.826575133042706 37.4186356018832 17 7.685338339721441 31.78172825698168 37.604377926621794 22.928555476675086 18 8.552862120367562 25.136220116456627 35.405065336632994 30.90585242654281 19 9.847611404542425 26.0456857123663 29.562261807710392 34.54444107538088 20 21.19659454248016 24.997321897077327 39.611230238777836 14.194853321664672 21 12.687853032974255 38.84974117723958 34.348531037851124 14.113874751935043 22 9.555652794396138 18.70405237824618 43.427390728861596 28.312904098496087 23 21.53285532978795 29.15192197006698 36.1890686193517 13.126154080793373 24 18.551536686378714 30.31666978355481 30.31812231395355 20.81367121611292 25 10.45513224381449 45.90940204770473 28.475769069454554 15.159696639026224 26 11.673078983156095 20.324894736937665 43.8531637019916 24.148862577914638 27 27.490590326510677 24.942488874524976 28.108460444873746 19.458460354090597 28 9.223386465684877 31.618863286023206 39.77863436723237 19.379115881059548 29 17.75682099196932 28.153670453534463 38.026156441155265 16.063352113340947 30 9.999582397510363 44.95853933543103 33.50969473258007 11.532183534478532 31 18.085274428383897 19.146529450961665 32.97189535244742 29.79630076820701 32 34.08998062687581 28.250626857650207 26.378678306276925 11.28071420919706 33 22.410546823225236 26.604365216980806 25.404938240223107 25.580149719570848 34 16.669601988514117 27.133449414721035 27.59154118922295 28.6054074075419 35 19.99063117892814 34.27009439631929 26.26320213957728 19.476072285175295 36 23.230137100713012 31.082516436289293 30.35153051312452 15.335815949873178 37 17.715968574504824 27.239121001229204 35.23548241258037 19.809428011685608 38 14.906956349645856 30.703587568518582 26.13192970479135 28.25752637704421 39 24.83736198691633 23.035861159881836 26.58675328589611 25.54002356730572 40 12.412780088713294 33.167805389977175 32.72569144986137 21.693723071448154 41 18.256673015434952 25.990307990914424 25.423821135406698 30.32919785824393 42 15.684423245570237 26.30532552114067 38.482977251558296 19.5272739817308 43 26.206371887726664 23.652097181546328 24.76019630948339 25.381334621243617 44 17.629543015779927 21.988405176092076 31.53134832949926 28.850703478628738 45 16.388718922658203 21.054064997104017 31.688766311462462 30.86844976877532 46 31.387003121124696 26.503595920568372 24.565194103452846 17.54420685485408 47 13.005594057698138 25.34284256567707 41.99773768390397 19.653825692720826 48 19.25002224187173 23.771386240542665 27.00744240263053 29.97114911495507 49 16.439739052913865 20.22703050132271 40.27812325809831 23.05510718766511 50 17.976153082178723 20.48140488740166 35.184643848624546 26.357798181795072 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 11868.0 1 8475.5 2 5083.0 3 18813.5 4 32544.0 5 20350.0 6 8156.0 7 7682.0 8 7208.0 9 7374.0 10 7540.0 11 7173.0 12 6806.0 13 6436.0 14 6066.0 15 5509.5 16 4953.0 17 4652.5 18 4352.0 19 3905.5 20 3459.0 21 3091.5 22 2724.0 23 2466.5 24 2209.0 25 2324.0 26 2439.0 27 2541.5 28 2644.0 29 2709.0 30 2774.0 31 2976.0 32 3178.0 33 3911.5 34 4645.0 35 5703.5 36 6762.0 37 7622.0 38 8482.0 39 10112.5 40 11743.0 41 16681.5 42 21620.0 43 74241.5 44 126863.0 45 96738.0 46 66613.0 47 57257.0 48 47901.0 49 40907.5 50 33914.0 51 30456.5 52 26999.0 53 23969.0 54 20939.0 55 18548.5 56 16158.0 57 14684.5 58 13211.0 59 11758.5 60 10306.0 61 8672.0 62 7038.0 63 5786.5 64 4535.0 65 3711.5 66 2888.0 67 2473.0 68 2058.0 69 1741.0 70 1424.0 71 1325.0 72 1226.0 73 977.0 74 728.0 75 538.0 76 348.0 77 250.0 78 152.0 79 134.0 80 116.0 81 76.5 82 37.0 83 28.0 84 19.0 85 13.5 86 8.0 87 9.5 88 11.0 89 8.0 90 5.0 91 5.5 92 6.0 93 3.5 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 550763.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.72193939450518 #Duplication Level Percentage of deduplicated Percentage of total 1 79.3583172984859 23.586830971955102 2 6.73887004014972 4.005845738415534 3 3.0768471777214237 2.743495960271714 4 2.049581574708415 2.4367015739031195 5 1.4838993695520617 2.205218356468541 6 1.1791569122763836 2.102809816997432 7 0.9430292818153678 1.9620061412952077 8 0.7647675562280575 1.8184299965675326 9 0.6132557640788481 1.640443558795424 >10 3.5840181131141637 18.556778698158915 >50 0.10169270257960271 2.1425393060872655 >100 0.0901228741424024 4.949124626200057 >500 0.006698321726800178 1.423110877155277 >1k 0.004262568371600113 2.7930111988121884 >5k 0.0024357533552000652 5.010660642762794 >10k+ 0.0030446916940000813 22.62299253615391 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT 39799 7.226157167420469 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCC 28540 5.181902197496927 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25545 4.638111129469482 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATG 20710 3.760238069732353 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10403 1.8888342172586032 No Hit GAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC 9981 1.8122132387251868 No Hit GAATGACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTC 6195 1.1248032275225461 No Hit GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG 5950 1.0803194840612023 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGT 5559 1.0093270608228948 No Hit GAATGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCT 2970 0.5392519105313901 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGACAGTCGT 2670 0.48478202057872444 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGACAG 2634 0.47824563378440454 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCAATGACAGTCGTATGCC 2452 0.4452005672131207 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1750 0.31774102472388305 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAATGACAGTCG 1606 0.29159547754660353 No Hit GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCCT 1350 0.2451145047869955 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCTATACACATCTGACGC 970 0.17611931084695231 No Hit CGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT 943 0.1712170207512124 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTA 869 0.1577811145628882 No Hit CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 778 0.14125858127724628 No Hit GAATGATACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCG 725 0.1316355673856087 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTAT 698 0.1267332772898688 No Hit GAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCCTC 668 0.12128628829460222 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 616 0.11184484070280683 No Hit GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCAATGACAG 558 0.10131399531195814 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1768455760463212 0.0 2 1.8156629984221887E-4 0.0 0.0 1.6420856157730277 0.0 3 1.8156629984221887E-4 0.0 0.0 1.9629132675942285 0.0 4 1.8156629984221887E-4 0.0 0.0 4.273162866786621 0.0 5 1.8156629984221887E-4 0.0 0.0 12.844363183438249 0.0 6 1.8156629984221887E-4 0.0 0.0 13.795407462011791 0.0 7 1.8156629984221887E-4 0.0 0.0 15.309488836396055 0.0 8 1.8156629984221887E-4 0.0 0.0 16.733876458658262 0.0 9 1.8156629984221887E-4 0.0 0.0 17.00477337802285 0.0 10 3.6313259968443775E-4 0.0 0.0 22.750802069129552 0.0 11 3.6313259968443775E-4 0.0 0.0 22.962326808445738 0.0 12 3.6313259968443775E-4 0.0 0.0 27.380016449906766 0.0 13 7.262651993688755E-4 0.0 0.0 27.644195416177194 0.0 14 7.262651993688755E-4 0.0 0.0 27.9392406534208 0.0 15 7.262651993688755E-4 0.0 0.0 28.62429030272549 0.0 16 7.262651993688755E-4 0.0 0.0 29.070398701437824 0.0 17 7.262651993688755E-4 0.0 0.0 29.235079335394715 0.0 18 7.262651993688755E-4 0.0 0.0 29.334759234008093 0.0 19 7.262651993688755E-4 0.0 0.0 30.124935770921432 0.0 20 9.078314992110944E-4 0.0 0.0 30.260021098004042 0.0 21 0.0010893977990533133 0.0 0.0 30.32465870074787 0.0 22 0.0010893977990533133 0.0 0.0 30.553250672249224 0.0 23 0.0010893977990533133 0.0 0.0 30.63150574748122 0.0 24 0.0010893977990533133 0.0 0.0 30.887151097659064 0.0 25 0.0010893977990533133 0.0 0.0 30.968674366288223 0.0 26 0.0010893977990533133 0.0 0.0 31.29803563420201 0.0 27 0.0010893977990533133 0.0 0.0 31.695665830856466 0.0 28 0.0010893977990533133 0.0 0.0 31.78372548627994 0.0 29 0.0010893977990533133 0.0 0.0 31.897567556281015 0.0 30 0.0010893977990533133 0.0 0.0 31.969286244718692 0.0 31 0.0010893977990533133 0.0 0.0 32.062429756537746 0.0 32 0.0010893977990533133 0.0 0.0 32.208772194210574 0.0 33 0.0012709640988955322 0.0 0.0 32.27086786875662 0.0 34 0.001452530398737751 0.0 0.0 32.40214030354254 0.0 35 0.001452530398737751 0.0 0.0 32.46786730408542 0.0 36 0.001452530398737751 0.0 0.0 32.52596852003494 0.0 37 0.001452530398737751 0.0 0.0 32.5757176861917 0.0 38 0.001815662998422189 0.0 0.0 32.63835805963727 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCCTA 65 0.0 44.000004 30 ATCCTAG 30 2.5253066E-6 44.0 14 GTGCAAG 50 2.7284841E-11 44.0 1 ACTATGC 20 7.852908E-4 44.0 8 TAATACG 25 4.4398104E-5 44.0 4 GGTGTTC 25 4.4398104E-5 44.0 9 TCACCGA 20 7.852908E-4 44.0 15 AGATAGA 20 7.852908E-4 44.0 23 CGTGCGG 25 4.4398104E-5 44.0 2 TAGAATG 20 7.852908E-4 44.0 1 CCGTGTA 45 4.783942E-10 44.0 31 GATCCAC 70 0.0 44.0 35 TAAACCG 25 4.4398104E-5 44.0 27 GCGCCTA 25 4.4398104E-5 44.0 33 TATATCG 40 8.29823E-9 44.0 27 AGGGTCC 20 7.852908E-4 44.0 6 TGCGGGC 35 1.4442412E-7 44.0 4 CCTAACA 25 4.4398104E-5 44.0 27 CGTTCGA 30 2.5253066E-6 44.0 14 ATCGTGT 35 1.4442412E-7 44.0 30 >>END_MODULE