##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546141_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 549251 Sequences flagged as poor quality 0 Sequence length 50 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.010423285528837 31.0 28.0 31.0 25.0 33.0 2 28.86771985849821 31.0 28.0 31.0 23.0 33.0 3 28.266657684737943 31.0 27.0 31.0 16.0 34.0 4 31.658525883430343 33.0 30.0 35.0 25.0 37.0 5 33.58008633575542 35.0 33.0 35.0 30.0 37.0 6 33.697613659328795 35.0 33.0 36.0 29.0 37.0 7 33.371183666483994 35.0 33.0 36.0 28.0 37.0 8 33.48267367742617 35.0 33.0 36.0 28.0 37.0 9 35.22771556173771 37.0 34.0 39.0 29.0 39.0 10 35.65362466340525 37.0 35.0 39.0 30.0 39.0 11 35.801333088150955 37.0 35.0 39.0 30.0 39.0 12 35.422759357743544 37.0 34.0 39.0 29.0 39.0 13 35.573429998306786 38.0 35.0 39.0 30.0 39.0 14 37.01924438917726 39.0 36.0 41.0 31.0 41.0 15 36.86202665083905 39.0 35.0 41.0 30.0 41.0 16 36.73630635174082 39.0 35.0 41.0 30.0 41.0 17 36.3171245933098 38.0 34.0 40.0 29.0 41.0 18 35.52211830292526 38.0 34.0 39.0 27.0 40.0 19 34.626793578891984 37.0 33.0 38.0 27.0 40.0 20 34.44697051075009 35.0 34.0 38.0 27.0 40.0 21 34.948606374863225 35.0 34.0 39.0 30.0 40.0 22 35.19190679671043 35.0 34.0 39.0 30.0 40.0 23 35.2451502136546 35.0 34.0 39.0 30.0 40.0 24 35.0355866443575 35.0 34.0 39.0 30.0 40.0 25 34.80440272298093 35.0 34.0 39.0 27.0 40.0 26 34.5201392441707 35.0 33.0 39.0 27.0 40.0 27 34.822152349290214 35.0 34.0 39.0 29.0 40.0 28 34.715037387278315 35.0 34.0 39.0 27.0 40.0 29 34.53254522977655 35.0 33.0 39.0 26.0 40.0 30 34.178022434187646 35.0 33.0 39.0 25.0 40.0 31 33.54969403788068 35.0 33.0 38.0 22.0 40.0 32 33.12940349676195 35.0 33.0 39.0 20.0 40.0 33 32.387839075395405 35.0 32.0 39.0 15.0 40.0 34 31.64253501586706 35.0 31.0 39.0 12.0 40.0 35 30.950101137731203 35.0 29.0 39.0 8.0 40.0 36 30.638959237215772 35.0 27.0 39.0 8.0 40.0 37 30.454415194510343 35.0 25.0 39.0 8.0 40.0 38 30.232514824734046 35.0 24.0 39.0 7.0 40.0 39 29.92654724342787 35.0 23.0 38.0 7.0 40.0 40 29.581888790370886 35.0 23.0 38.0 7.0 40.0 41 29.001423757080097 35.0 22.0 38.0 7.0 40.0 42 29.29464124780838 35.0 22.0 38.0 7.0 40.0 43 29.220523949888122 35.0 22.0 38.0 7.0 40.0 44 29.08733711909491 35.0 21.0 38.0 7.0 40.0 45 29.16625185935028 35.0 22.0 38.0 7.0 40.0 46 28.712191693779346 34.0 20.0 38.0 7.0 40.0 47 28.602074461402893 34.0 20.0 38.0 7.0 40.0 48 28.663359738990007 34.0 21.0 38.0 7.0 40.0 49 28.482952238594013 34.0 20.0 37.0 7.0 40.0 50 28.526655390704796 34.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 8.0 14 26.0 15 110.0 16 258.0 17 692.0 18 1657.0 19 2793.0 20 3606.0 21 4740.0 22 6492.0 23 8738.0 24 12309.0 25 18011.0 26 25113.0 27 27851.0 28 25465.0 29 23408.0 30 23475.0 31 25983.0 32 30705.0 33 37316.0 34 49922.0 35 63090.0 36 45652.0 37 51595.0 38 50471.0 39 9759.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.522021807880183 17.743618127231446 14.406528162898201 38.327831901990166 2 47.873740785178356 28.948513521140605 14.71203511691376 8.46571057676727 3 17.841387635161336 27.363627922388854 45.99317980304087 8.80180463940894 4 16.250675920480802 18.21862864155004 55.25178834449095 10.27890709347821 5 19.825726307280277 20.582393113530973 45.56605267901197 14.025827900176784 6 12.204074275695447 32.87604392163146 47.104147284210676 7.815734518462415 7 41.60320145070286 10.440035612133615 43.895049804187884 4.061713132975634 8 38.49424033820603 16.30329302996262 39.37343764508394 5.8290289867474065 9 35.92747213933156 10.954372408971489 38.33384008404172 14.784315367655227 10 21.7224911743447 20.74861948362406 44.240065106845506 13.288824235185734 11 18.876069410888647 20.8125246927179 46.044704515786044 14.266701380607408 12 15.820817804610279 18.803060895656085 50.245880298806924 15.130241000926716 13 14.800883384827701 21.40915537704984 52.786977174370186 11.002984063752272 14 12.23029179737497 28.432720195320538 46.5042394096688 12.83274859763569 15 10.603166858139538 22.421807151921435 53.930534491516624 13.044491498422397 16 11.589965243577161 22.53195715619999 47.7992757409636 18.078801859259247 17 11.252232585830523 22.43873930133946 48.83213685546316 17.47689125736685 18 11.55282375453117 24.405053427303727 47.86281681781189 16.179306000353208 19 13.296471012342263 25.1611740351861 44.33310089558326 17.209254056888383 20 14.508485191651904 24.761538895696138 47.745930366990684 12.984045545661274 21 13.928422524492445 26.212059695840335 47.458630025252575 12.400887754414649 22 11.867069882439903 20.235010951277285 47.929088886501795 19.96883027978101 23 13.109307038130108 26.298176971912657 47.44479299992171 13.14772299003552 24 15.53570225634546 24.150707053787794 45.55840590185544 14.755184788011311 25 14.323141878667494 28.35060837394925 43.77215517131512 13.554094576068138 26 12.634660656057067 22.18038747312249 47.075744969057865 18.10920690176258 27 16.399423942787543 22.69326774097817 45.01439232700532 15.892915989228968 28 13.537344492772885 23.30755883921923 48.027222526677235 15.127874141330649 29 18.456953196261818 22.68926228627713 44.92081033989924 13.932974177561807 30 14.295831960251324 27.333404946008294 46.66172660586872 11.709036487871666 31 19.707201261354097 21.555718605883285 41.56187244083306 17.175207691929558 32 17.726503911690646 23.996497047797817 41.74157170401146 16.53542733650007 33 15.138616042574343 22.039468294095048 43.0926844011208 19.729231262209808 34 17.299922986030065 23.40532834714912 39.302431857201896 19.992316809618917 35 14.279992207569943 26.04437679676505 38.04653974230361 21.629091253361395 36 19.912025649475375 27.703727439731562 36.167435289148315 16.21681162164475 37 13.743989542121907 27.18483898982432 38.88586456829392 20.185306899759855 38 17.09965025097815 27.02899038872938 36.25519116032561 19.616168199966864 39 17.56191613670253 24.692535835164612 35.162248225310464 22.583299802822392 40 15.1103957935443 24.542877482244002 41.4375212789781 18.909205445233603 41 15.184314639390733 28.92739385089877 36.490784723195766 19.397506786514725 42 16.37411675172189 26.302182426613697 38.83069853309325 18.493002288571166 43 18.712756098759947 26.26777192940932 34.710724240829784 20.308747731000945 44 17.168653311509672 25.197223127495445 36.88022415981036 20.753899401184523 45 16.73624626992031 24.396860451778878 36.52137183182188 22.345521446478934 46 21.200143468104745 25.675146699778423 34.80503449242696 18.31967533968987 47 15.465060600708966 25.210331888335208 41.18372110383049 18.14088640712534 48 16.470611796792358 27.055025844286128 35.039899790806025 21.43446256811549 49 15.167382489972708 24.771188400203187 39.7131730301811 20.348256079643004 50 16.041846077658484 23.33213776579378 40.20893908249598 20.417077074051754 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 15895.0 1 12295.5 2 8696.0 3 36880.0 4 65064.0 5 41188.0 6 17312.0 7 15634.5 8 13957.0 9 13813.0 10 13669.0 11 13200.0 12 12731.0 13 12316.5 14 11902.0 15 11085.5 16 10269.0 17 9397.5 18 8526.0 19 7736.0 20 6946.0 21 6397.0 22 5848.0 23 5462.5 24 5077.0 25 4940.0 26 4803.0 27 4931.0 28 5059.0 29 5181.5 30 5304.0 31 5874.5 32 6445.0 33 6926.0 34 7407.0 35 8564.0 36 9721.0 37 10483.0 38 11245.0 39 12670.5 40 14096.0 41 15959.5 42 17823.0 43 19572.5 44 21322.0 45 22840.0 46 24358.0 47 43501.0 48 62644.0 49 53219.0 50 43794.0 51 37818.5 52 31843.0 53 25487.0 54 19131.0 55 16967.5 56 14804.0 57 13523.0 58 12242.0 59 11388.0 60 10534.0 61 9265.0 62 7996.0 63 7163.0 64 6330.0 65 5427.0 66 4524.0 67 4012.0 68 3500.0 69 3285.0 70 3070.0 71 2730.5 72 2391.0 73 1988.0 74 1585.0 75 1155.0 76 725.0 77 509.5 78 294.0 79 231.5 80 169.0 81 132.5 82 96.0 83 64.0 84 32.0 85 35.0 86 38.0 87 24.5 88 11.0 89 12.0 90 13.0 91 8.5 92 4.0 93 4.5 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 549251.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.23337903783596 #Duplication Level Percentage of deduplicated Percentage of total 1 77.80639607981496 29.7480143288756 2 7.7828558645552315 5.951297565327693 3 3.8187597074436135 4.380122620473218 4 2.4582341798618406 3.7594639664968628 5 1.7661095422492346 3.376216777557698 6 1.2850474015829525 2.9479022631784337 7 0.994522174043142 2.6616760269206883 8 0.7532773599054785 2.304027105750923 9 0.6246459833559097 2.1494093981497446 >10 2.573356757624073 15.144671675486174 >50 0.07769190515286832 2.091506559035706 >100 0.04623383312767309 3.7746253687577074 >500 0.0071495618238669725 1.9409807754858468 >1k 0.003336462184471254 2.655340426213902 >5k 4.766374549244648E-4 1.2679883800422984 >10k+ 0.0019065498196978593 15.846756762247512 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48562 8.841495054173775 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT 14671 2.6710920872242383 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13562 2.4691807570673516 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 10163 1.8503380057569307 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATG 6958 1.266816082264757 No Hit GAACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 3761 0.6847506877547788 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGT 1966 0.3579419973746065 No Hit GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG 1965 0.35775993125183203 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1957 0.35630340226963625 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 1866 0.33973538509715956 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCT 1655 0.30131943319174653 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCCT 1401 0.2550746380070314 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCA 912 0.16604430397031594 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 910 0.16568017172476698 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGT 887 0.16149265090095422 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 871 0.1585795929365627 No Hit CATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 816 0.1485659561839669 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 783 0.14255777413240941 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 779 0.14182950964131152 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 700 0.12744628594212848 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGCTCCATCG 638 0.11615818633011137 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 621 0.1130630622429454 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 608 0.1106962026468773 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10377768998144746 0.0 2 0.0 0.0 0.0 0.7264438298701322 0.0 3 0.0 0.0 0.0 0.9252600359398526 0.0 4 0.0 0.0 0.0 1.9100556940269566 0.0 5 0.0 0.0 0.0 5.461619550988528 0.0 6 0.0 0.0 0.0 6.190066108209179 0.0 7 0.0 0.0 0.0 6.90503977234452 0.0 8 0.0 0.0 0.0 7.649508148369325 0.0 9 0.0 0.0 0.0 7.897664273710927 0.0 10 0.0 0.0 0.0 10.199344197825766 0.0 11 0.0 0.0 0.0 10.435119826818704 0.0 12 0.0 0.0 0.0 12.017456499851615 0.0 13 0.0 0.0 0.0 12.138894603742187 0.0 14 0.0 0.0 0.0 12.242126095355312 0.0 15 0.0 0.0 0.0 12.47098321168282 0.0 16 0.0 0.0 0.0 12.656144458544453 0.0 17 0.0 0.0 0.0 12.74189760237123 0.0 18 0.0 0.0 0.0 12.815270249849341 0.0 19 0.0 0.0 0.0 13.06415463968204 0.0 20 1.8206612277446924E-4 0.0 0.0 13.120231005496576 0.0 21 1.8206612277446924E-4 0.0 0.0 13.161195883120833 0.0 22 1.8206612277446924E-4 0.0 0.0 13.251682746139743 0.0 23 1.8206612277446924E-4 0.0 0.0 13.309397707059249 0.0 24 1.8206612277446924E-4 0.0 0.0 13.37293878390754 0.0 25 1.8206612277446924E-4 0.0 0.0 13.410262339076306 0.0 26 1.8206612277446924E-4 0.0 0.0 13.468887630609684 0.0 27 3.6413224554893847E-4 0.0 0.0 13.552273914840391 0.0 28 3.6413224554893847E-4 0.0 0.0 13.601613834112273 0.0 29 5.461983683234077E-4 0.0 0.0 13.654595075839643 0.0 30 5.461983683234077E-4 0.0 0.0 13.707576317567014 0.0 31 7.282644910978769E-4 0.0 0.0 13.751090120910112 0.0 32 9.103306138723462E-4 0.0 0.0 13.804799627128581 0.0 33 0.0010923967366468154 0.0 0.0 13.862696654170861 0.0 34 0.0010923967366468154 0.0 0.0 13.92004748284482 0.0 35 0.0010923967366468154 0.0 0.0 13.989596741744666 0.0 36 0.0012744628594212846 0.0 0.0 14.03820839652545 0.0 37 0.0012744628594212846 0.0 0.0 14.089915175393399 0.0 38 0.0012744628594212846 0.0 0.0 14.155641045714983 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAA 20 7.8528875E-4 44.0 31 CGACGAA 30 2.525294E-6 44.0 19 GGCCGGA 20 7.8528875E-4 44.0 35 GACGGTC 35 1.4442412E-7 44.0 29 CGGCTAT 35 1.4442412E-7 44.0 31 CGGTCTA 35 1.4442412E-7 44.0 31 ATACCGG 35 1.4442412E-7 44.0 28 CACCCGT 30 2.525294E-6 44.0 16 CGTTTTT 16370 0.0 43.48931 1 GAATCTG 1890 0.0 42.021164 1 AGGGTAC 175 0.0 41.485714 6 CGGCTGT 865 0.0 40.947975 9 ACGGCTG 880 0.0 40.750004 8 CCGATGA 325 0.0 40.615387 18 GTAATGG 65 0.0 40.615383 2 TACGGCT 885 0.0 40.51977 7 GATACCT 1290 0.0 40.418606 5 GTTTTTT 17815 0.0 40.39405 2 AATCTGT 1990 0.0 40.241203 2 TGATACC 1300 0.0 40.107697 4 >>END_MODULE