##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546140_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 554390 Sequences flagged as poor quality 0 Sequence length 50 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.00020563141471 30.0 28.0 31.0 25.0 33.0 2 28.84864986742185 31.0 28.0 31.0 22.0 33.0 3 28.27620267320839 31.0 28.0 31.0 16.0 34.0 4 31.628752322372335 33.0 30.0 35.0 25.0 37.0 5 33.59321235953029 35.0 33.0 35.0 30.0 37.0 6 33.77653998087989 35.0 33.0 36.0 30.0 37.0 7 33.43190894496654 35.0 33.0 36.0 28.0 37.0 8 33.54121647215859 35.0 33.0 37.0 29.0 37.0 9 35.35259654755677 37.0 34.0 39.0 29.0 39.0 10 35.67294323490683 37.0 35.0 39.0 30.0 39.0 11 35.86485506592832 37.0 35.0 39.0 30.0 39.0 12 35.3711809376071 37.0 34.0 39.0 29.0 39.0 13 35.57526290156749 38.0 35.0 39.0 30.0 39.0 14 37.00634390952218 39.0 36.0 41.0 31.0 41.0 15 36.916715669474556 39.0 35.0 41.0 30.0 41.0 16 36.78094482223705 39.0 35.0 41.0 31.0 41.0 17 36.364469056079656 38.0 34.0 40.0 30.0 41.0 18 35.59393748083479 38.0 34.0 39.0 28.0 40.0 19 34.67324446689154 37.0 33.0 38.0 27.0 40.0 20 34.40558451631523 35.0 33.0 38.0 27.0 40.0 21 34.807882537563806 35.0 33.0 39.0 29.0 40.0 22 35.134641678240946 35.0 34.0 39.0 30.0 40.0 23 35.23476794314472 35.0 34.0 39.0 30.0 40.0 24 35.00113458034957 35.0 34.0 39.0 30.0 40.0 25 34.753015025523545 35.0 34.0 39.0 27.0 40.0 26 34.453518281354285 35.0 33.0 39.0 27.0 40.0 27 34.805158823211094 35.0 34.0 39.0 29.0 40.0 28 34.70290770035535 35.0 34.0 39.0 27.0 40.0 29 34.520999657280974 35.0 33.0 39.0 26.0 40.0 30 34.20554483305976 35.0 33.0 39.0 25.0 40.0 31 33.5909594328902 35.0 33.0 38.0 23.0 40.0 32 33.20499648262054 35.0 33.0 39.0 21.0 40.0 33 32.44371471346886 35.0 32.0 39.0 16.0 40.0 34 31.627249770017496 35.0 31.0 39.0 12.0 40.0 35 30.974876891718825 35.0 29.0 39.0 8.0 40.0 36 30.664977723263405 35.0 27.0 39.0 8.0 40.0 37 30.451039881671747 35.0 25.0 39.0 8.0 40.0 38 30.25276971085337 35.0 24.0 39.0 7.0 40.0 39 29.937913743032883 35.0 23.0 38.0 7.0 40.0 40 29.532076696910117 35.0 23.0 38.0 7.0 40.0 41 28.95079997835459 35.0 21.0 38.0 7.0 40.0 42 29.265035444362272 35.0 22.0 38.0 7.0 40.0 43 29.20842186908133 35.0 22.0 38.0 7.0 40.0 44 29.088933783076897 35.0 22.0 38.0 7.0 40.0 45 29.16298634535255 35.0 22.0 38.0 7.0 40.0 46 28.706242897599164 34.0 21.0 38.0 7.0 40.0 47 28.58016378361803 34.0 20.0 37.0 7.0 40.0 48 28.62474972492289 34.0 20.0 37.0 7.0 40.0 49 28.578735186421113 34.0 20.0 37.0 7.0 40.0 50 28.590753801475497 34.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 0.0 12 8.0 13 9.0 14 34.0 15 83.0 16 268.0 17 744.0 18 1568.0 19 2682.0 20 3505.0 21 4797.0 22 6398.0 23 8822.0 24 12393.0 25 18336.0 26 25285.0 27 28384.0 28 25854.0 29 23343.0 30 23725.0 31 26360.0 32 30454.0 33 38177.0 34 50479.0 35 63405.0 36 46416.0 37 52969.0 38 50830.0 39 9058.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.46048810404228 17.579321416331464 14.358664478075001 38.60152600155126 2 48.086725951045295 28.814192175183535 14.657371164703548 8.441710709067623 3 17.95396742365483 27.207561463951368 46.001731632965964 8.83673947942784 4 16.203033965259113 18.088349356950882 55.310521474052564 10.39809520373744 5 19.93740868341781 20.539331517523767 45.635202655170545 13.888057143887877 6 12.20205992171576 32.79099550857699 47.27881094536337 7.728133624343873 7 41.39179999639243 10.29401684734573 44.24755136275907 4.0666317935027685 8 38.39517307310738 16.298634535254966 39.50486119879507 5.801331192842583 9 35.81738487346453 10.835332527642995 38.66159202005808 14.685690578834395 10 21.881888201446635 20.35660816392792 44.326015981529245 13.435487653096196 11 19.16683201356446 20.401522393982578 46.29935604899078 14.132289543462184 12 15.809628600804487 18.29307887948917 50.14664766680495 15.750644852901388 13 15.03436209166832 21.13061202402641 52.909684518119015 10.92534136618626 14 12.340590558992767 28.454337199444435 46.642796587240035 12.562275654322768 15 10.507224156279875 22.154800772019698 53.97914825303487 13.358826818665559 16 11.586067569761358 22.14506033658616 48.048124966179046 18.220747127473437 17 11.227114486192031 22.46108335287433 48.98933963455329 17.32246252638035 18 11.50958711376468 24.07240390338931 47.90201843467595 16.515990548170063 19 13.29948231389455 24.900521293674128 44.61786828766753 17.182128104763795 20 14.73836108154909 24.223380652609176 47.86882880282833 13.169429463013401 21 13.854145998304443 26.202673208391204 47.555331084615524 12.38784970868883 22 11.93095113548224 19.92027273219214 48.48464077634878 19.66413535597684 23 13.334295351647757 25.923988527931602 47.594653583217585 13.147062537203052 24 15.415501722614044 24.01017334367503 45.76543588448565 14.808889049225273 25 14.505492523313912 28.030628258085464 44.06789444254045 13.395984776060175 26 12.689081693392737 22.014466350403143 47.39569617056585 17.90075578563827 27 16.52086076588683 22.391276898933963 45.23187647684843 15.85598585833078 28 13.563375962769891 23.13281264092065 48.304803477696204 14.99900791861325 29 18.20126625660636 22.348166453218855 45.5071339670629 13.94343332311189 30 14.162953877234438 27.1801439419903 46.80441566406321 11.852486516712062 31 19.65150886560003 21.33047132884792 41.87503382095636 17.142985984595683 32 17.775392774039936 23.92810115622576 42.008513862082644 16.28799220765165 33 15.277692599072854 21.733797507170046 43.279099550857694 19.709410342899403 34 17.135410090369597 23.250599758292896 39.60064214722488 20.013348004112625 35 14.243402658778118 25.835603095293923 38.39733761431483 21.523656631613125 36 19.848121358610367 27.505366258410145 36.47197821028518 16.17453417269431 37 13.7284222298382 26.90542758707769 39.18180342358268 20.184346759501434 38 17.105467270333158 26.892620718266926 36.62818593408972 19.373726077310195 39 17.502480203466874 24.66061797651473 35.303306336694384 22.533595483324014 40 15.140785367701437 24.428831688883275 41.52996987680153 18.900413066613755 41 15.194718519453815 28.639766229549597 36.64117318133444 19.52434206966215 42 16.37980483053446 26.27698912318043 38.80174606324068 18.54145998304443 43 18.62966503724815 26.33633362795144 34.861379173506016 20.172622161294395 44 17.261133858835837 25.023178628763144 37.06398023052364 20.65170728187738 45 16.765453922329048 24.22572557225058 36.814336477930695 22.194484027489672 46 21.191399556269054 25.56323166002273 35.12094373996645 18.12442504374177 47 15.471419037139919 25.26741102833745 41.34291744079078 17.91825249373185 48 16.53186385035805 26.94204440917044 35.2268258806977 21.299265859773804 49 15.30673352693952 24.68587095726835 40.11273652122152 19.89465899457061 50 16.13827810746947 23.2201158029546 40.27110878623352 20.370497303342415 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 15389.0 1 11938.0 2 8487.0 3 37489.0 4 66491.0 5 42018.5 6 17546.0 7 15852.5 8 14159.0 9 13958.0 10 13757.0 11 13359.0 12 12961.0 13 12410.5 14 11860.0 15 11033.0 16 10206.0 17 9374.5 18 8543.0 19 7842.5 20 7142.0 21 6605.0 22 6068.0 23 5648.5 24 5229.0 25 4986.5 26 4744.0 27 4897.0 28 5050.0 29 5183.5 30 5317.0 31 5886.5 32 6456.0 33 7011.0 34 7566.0 35 8596.0 36 9626.0 37 10676.5 38 11727.0 39 13073.5 40 14420.0 41 16347.5 42 18275.0 43 20010.5 44 21746.0 45 23079.5 46 24413.0 47 43654.0 48 62895.0 49 53299.0 50 43703.0 51 37815.0 52 31927.0 53 25765.0 54 19603.0 55 17415.0 56 15227.0 57 13990.5 58 12754.0 59 11657.5 60 10561.0 61 9309.0 62 8057.0 63 7167.5 64 6278.0 65 5385.5 66 4493.0 67 3989.5 68 3486.0 69 3217.5 70 2949.0 71 2644.5 72 2340.0 73 1943.0 74 1546.0 75 1141.5 76 737.0 77 515.0 78 293.0 79 221.0 80 149.0 81 127.5 82 106.0 83 80.0 84 54.0 85 42.5 86 31.0 87 20.0 88 9.0 89 7.0 90 5.0 91 6.5 92 8.0 93 4.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 554390.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.94350933048346 #Duplication Level Percentage of deduplicated Percentage of total 1 77.39015105113023 29.36453918496084 2 7.942432522150268 6.02727525021888 3 3.899966639729598 4.4393526174946265 4 2.4668342339772575 3.744013910946884 5 1.8178154686310641 3.448714909754997 6 1.309905643134613 2.982145019539867 7 0.9973843184365238 2.649098283487189 8 0.7843404199301457 2.380850243351584 9 0.6116698582908097 2.0888010877709546 >10 2.6415471791803395 15.384966761337063 >50 0.07780721267027299 2.040513609412963 >100 0.0467797965746593 3.712264063417059 >500 0.00763751780810764 1.990524105042617 >1k 0.0033414140410470924 2.601627683788185 >5k 9.54689726013455E-4 3.0975380568188204 >10k+ 0.0014320345890201827 14.04777521265745 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49687 8.962463247894082 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT 14834 2.6757336892801096 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13039 2.351954400331896 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 9851 1.7769079528851532 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATG 7251 1.3079240246036183 No Hit GAACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 3934 0.7096087591767528 No Hit GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG 1986 0.35823156983351073 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 1931 0.34831075596601674 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGT 1927 0.347589242230199 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1898 0.3423582676455203 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCT 1668 0.30087122783599995 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCA 1020 0.18398600263352513 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGT 969 0.17478670250184888 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 879 0.1585526434459496 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 827 0.14917296488031892 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 823 0.14845145114450117 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 795 0.14340085499377694 No Hit CATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 780 0.1406951784844604 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCCT 741 0.1336604195602374 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGCTCCATCG 683 0.12319847039088005 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 667 0.12031241544760908 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 624 0.11255614278756831 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 572 0.10317646422193763 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11472068399502156 0.0 2 0.0 0.0 0.0 0.6949981060264435 0.0 3 0.0 0.0 0.0 0.896480816753549 0.0 4 0.0 0.0 0.0 1.8786413896354552 0.0 5 0.0 0.0 0.0 5.316293583939104 0.0 6 0.0 0.0 0.0 6.073341871245874 0.0 7 0.0 0.0 0.0 6.768700734140226 0.0 8 0.0 0.0 0.0 7.482458197297931 0.0 9 0.0 0.0 0.0 7.728855138079691 0.0 10 0.0 0.0 0.0 9.933440357870813 0.0 11 1.803784339544364E-4 0.0 0.0 10.163963996464583 0.0 12 1.803784339544364E-4 0.0 0.0 11.779794007828425 0.0 13 3.607568679088728E-4 0.0 0.0 11.899745666408124 0.0 14 3.607568679088728E-4 0.0 0.0 11.998593048215156 0.0 15 3.607568679088728E-4 0.0 0.0 12.23993939284619 0.0 16 3.607568679088728E-4 0.0 0.0 12.426270315121124 0.0 17 3.607568679088728E-4 0.0 0.0 12.510867800645755 0.0 18 3.607568679088728E-4 0.0 0.0 12.597449448943884 0.0 19 3.607568679088728E-4 0.0 0.0 12.871263911686718 0.0 20 3.607568679088728E-4 0.0 0.0 12.927902739948411 0.0 21 3.607568679088728E-4 0.0 0.0 12.973538483738885 0.0 22 3.607568679088728E-4 0.0 0.0 13.072927000847779 0.0 23 3.607568679088728E-4 0.0 0.0 13.129385450675517 0.0 24 3.607568679088728E-4 0.0 0.0 13.193600173163297 0.0 25 3.607568679088728E-4 0.0 0.0 13.230036616822092 0.0 26 3.607568679088728E-4 0.0 0.0 13.2913652843666 0.0 27 3.607568679088728E-4 0.0 0.0 13.394361370154584 0.0 28 5.411353018633092E-4 0.0 0.0 13.444326196359963 0.0 29 5.411353018633092E-4 0.0 0.0 13.494651779433251 0.0 30 5.411353018633092E-4 0.0 0.0 13.544796984072585 0.0 31 5.411353018633092E-4 0.0 0.0 13.592056133768647 0.0 32 5.411353018633092E-4 0.0 0.0 13.647973448294522 0.0 33 5.411353018633092E-4 0.0 0.0 13.700643951009218 0.0 34 5.411353018633092E-4 0.0 0.0 13.76251375385559 0.0 35 5.411353018633092E-4 0.0 0.0 13.829794909720594 0.0 36 5.411353018633092E-4 0.0 0.0 13.874709139775248 0.0 37 5.411353018633092E-4 0.0 0.0 13.921607532603401 0.0 38 5.411353018633092E-4 0.0 0.0 13.983116578581864 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGCTA 40 8.29823E-9 44.0 30 CCATCGA 20 7.852951E-4 44.0 41 AGACCCG 30 2.5253357E-6 44.0 39 GTCGTAC 20 7.852951E-4 44.0 9 TCGTAGG 25 4.4398486E-5 44.0 2 CGGCTAT 40 8.29823E-9 44.0 31 CCAGTCG 25 4.4398486E-5 44.0 28 CGTTTTT 16005 0.0 43.463917 1 GATACCT 1200 0.0 41.8 5 CGATGAA 465 0.0 41.63441 19 CCGATGA 460 0.0 41.608696 18 TGATACC 1235 0.0 41.1498 4 GAATCTG 2075 0.0 40.9253 1 CGACGGG 65 0.0 40.615387 3 CGGCTGT 870 0.0 40.45977 9 ACGGTCT 60 3.6379788E-12 40.333332 30 GTTTTTT 17480 0.0 40.249428 2 AAGGGCT 170 0.0 40.11765 5 AGGGCGC 170 0.0 40.11765 6 CGGTCTA 55 7.8216544E-11 40.0 31 >>END_MODULE