##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546139_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 548948 Sequences flagged as poor quality 0 Sequence length 50 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.89785917791849 30.0 28.0 31.0 25.0 33.0 2 28.74866471869831 31.0 28.0 31.0 16.0 33.0 3 28.17904428106123 31.0 27.0 31.0 16.0 33.0 4 31.572591575158302 33.0 30.0 35.0 25.0 37.0 5 33.56271450119137 35.0 33.0 35.0 30.0 37.0 6 33.72802341934027 35.0 33.0 36.0 30.0 37.0 7 33.31608822693588 35.0 32.0 36.0 28.0 37.0 8 33.47852073420433 35.0 33.0 36.0 28.0 37.0 9 35.29136275202752 37.0 34.0 39.0 29.0 39.0 10 35.70141069828107 37.0 35.0 39.0 30.0 39.0 11 35.87603926054927 37.0 35.0 39.0 30.0 39.0 12 35.52962029190379 37.0 34.0 39.0 30.0 39.0 13 35.62967894955442 38.0 35.0 39.0 30.0 39.0 14 37.0541162368749 39.0 36.0 41.0 31.0 41.0 15 36.87285680975247 39.0 35.0 41.0 30.0 41.0 16 36.73434095761347 39.0 35.0 41.0 30.0 41.0 17 36.31323003271712 38.0 34.0 40.0 29.0 41.0 18 35.52940533529588 38.0 34.0 39.0 27.0 40.0 19 34.57646443743305 37.0 33.0 38.0 27.0 40.0 20 34.44658692626624 35.0 34.0 38.0 27.0 40.0 21 34.95091520508318 35.0 34.0 39.0 30.0 40.0 22 35.14399906730692 35.0 34.0 39.0 30.0 40.0 23 35.207921333168166 35.0 34.0 39.0 30.0 40.0 24 35.012469304925055 35.0 34.0 39.0 30.0 40.0 25 34.773386550274346 35.0 34.0 39.0 27.0 40.0 26 34.45900704620474 35.0 33.0 39.0 27.0 40.0 27 34.814051604159225 35.0 34.0 39.0 28.0 40.0 28 34.709810400985155 35.0 34.0 39.0 27.0 40.0 29 34.50686403812383 35.0 33.0 39.0 26.0 41.0 30 34.20393006259245 35.0 33.0 39.0 25.0 40.0 31 33.564609034006864 35.0 33.0 38.0 23.0 40.0 32 33.194176861924994 35.0 33.0 39.0 21.0 40.0 33 32.427477648156106 35.0 32.0 39.0 15.0 40.0 34 31.616981936358272 35.0 31.0 39.0 12.0 40.0 35 30.927195289899956 35.0 29.0 39.0 8.0 40.0 36 30.678004109678877 35.0 27.0 39.0 8.0 40.0 37 30.480557356980988 35.0 25.0 39.0 8.0 40.0 38 30.271304385843468 35.0 24.0 39.0 7.0 40.0 39 29.935930179179085 35.0 23.0 38.0 7.0 40.0 40 29.582778332373923 35.0 23.0 38.0 7.0 40.0 41 29.00661446985871 35.0 22.0 38.0 7.0 40.0 42 29.353732958312992 35.0 23.0 38.0 7.0 40.0 43 29.300053921318593 35.0 22.0 38.0 7.0 40.0 44 29.179858565838657 35.0 22.0 38.0 7.0 40.0 45 29.26835875164861 35.0 23.0 38.0 7.0 40.0 46 28.82465187959515 34.0 22.0 38.0 7.0 40.0 47 28.739862427770937 34.0 21.0 38.0 7.0 40.0 48 28.755568833477852 34.0 22.0 38.0 7.0 40.0 49 28.739505381201862 34.0 21.0 38.0 7.0 40.0 50 28.66958436864694 34.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 1.0 12 1.0 13 20.0 14 36.0 15 86.0 16 241.0 17 643.0 18 1497.0 19 2640.0 20 3534.0 21 4790.0 22 6610.0 23 8674.0 24 12329.0 25 18199.0 26 25193.0 27 27575.0 28 25359.0 29 23094.0 30 23278.0 31 26155.0 32 30457.0 33 37490.0 34 49971.0 35 63045.0 36 45511.0 37 51701.0 38 50645.0 39 10170.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.549975589673338 17.615511851760093 14.373128238011615 38.461384320554956 2 47.94661789459111 28.81256512456553 14.743837303351137 8.49697967749222 3 17.976748253022144 27.203851730947193 45.97903626573009 8.840363750300575 4 16.258188389428508 18.137965708956038 55.13782726232721 10.466018639288238 5 20.13487616313385 20.675364515400364 45.36495260024629 13.824806721219495 6 12.298068305194663 32.820959362271104 46.945065835015335 7.935906497518891 7 41.29535037927089 10.382586328759738 44.19034225463979 4.131721037329584 8 38.389975006740165 16.473873663807865 39.293339259820605 5.842812069631368 9 35.754024060566756 10.938923176694331 38.538805132726594 14.768247630012315 10 21.897884681244854 20.702325174697787 44.080495784664485 13.319294359392874 11 19.19016008802291 20.52598788956331 46.10819239709408 14.175659625319703 12 15.82262800848168 18.678818394456307 49.94571434817141 15.552839248890605 13 15.14150702798808 21.295277512624146 52.66600843795769 10.89720702143008 14 12.306994469421511 28.491951878866484 46.505497788497266 12.69555586321473 15 10.572221776926048 22.34200689318478 53.63276667371044 13.453004656178727 16 11.63589265285601 22.189351268243986 47.85462375306951 18.3201323258305 17 11.308357075715733 22.710712125738684 48.685667859250785 17.295262939294798 18 11.575959835904312 24.110662576418896 47.73494028578299 16.578437301893803 19 13.267923373434279 25.055742984763583 44.34973804440494 17.326595597397205 20 14.884105598344469 24.31596435363641 47.695227963304355 13.104702084714765 21 14.02846899888514 26.20412133754017 47.38445171491653 12.382957948658161 22 11.874348754344673 20.08223001085713 48.38855410712854 19.65486712766965 23 13.344251185904676 26.021043887581335 47.320329065776725 13.314375860737265 24 15.361382134555551 24.205389217193616 45.644760523765456 14.78846812448538 25 14.503013035843104 28.13144414407193 43.81890452283276 13.546638297252198 26 12.66732003759919 22.057644804243754 47.29245757339493 17.982577584762126 27 16.490815159177192 22.50704984807304 45.184243316306826 15.81789167644294 28 13.646283436682527 23.24318514686273 48.040433702281454 15.070097714173292 29 18.247812178931337 22.401939710136478 45.34928627119509 14.000961839737098 30 14.243607773413874 27.216785560745283 46.69986956870232 11.839737097138526 31 19.502575835962606 21.454126802538674 41.68227227351225 17.361025087986476 32 17.91280777049921 23.876942806968966 41.99195552219883 16.218293900333 33 15.279953656812667 21.951805999839692 43.05216523240817 19.716075110939467 34 17.117468321225328 23.469982584871428 39.465304546150094 19.947244547753158 35 14.344892412396074 25.98515706405707 38.10652375088351 21.563426772663348 36 19.943783382032542 27.50861648097816 36.35517389625247 16.192426240736825 37 13.848306214796303 27.03297944431895 38.94612968805789 20.17258465282686 38 17.22221412592814 26.853727493314484 36.47868286249335 19.445375518264026 39 17.480344222039246 24.738590904785152 35.23320970292268 22.54785517025292 40 15.081209877802634 24.55697078776132 41.37823618994877 18.983583144487273 41 15.364843300276165 28.55188469581818 36.675058475484015 19.408213528421637 42 16.4115726808368 26.417620612517034 38.665775264688094 18.50503144195807 43 18.411944300735225 26.451139270021933 34.83900114400635 20.29791528523649 44 17.34317275953278 25.134621129870226 37.07199953365346 20.450206576943536 45 16.849501227803 24.299387191500834 36.781625946355575 22.069485634340595 46 21.296917012176017 25.647420156371826 35.0433920881395 18.012270743312662 47 15.518774091535082 25.37744923016388 41.28259871608969 17.821177962211358 48 16.611773792781833 27.031522111383953 35.11225106931804 21.244453026516172 49 15.267566326865204 24.769012729803187 40.21346284165349 19.749958101678118 50 16.14524508696634 23.32880345679372 40.17411485240861 20.351836603831327 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 15236.0 1 11846.0 2 8456.0 3 37210.0 4 65964.0 5 41516.5 6 17069.0 7 15507.5 8 13946.0 9 13768.5 10 13591.0 11 13112.0 12 12633.0 13 12149.0 14 11665.0 15 10733.0 16 9801.0 17 9085.5 18 8370.0 19 7773.0 20 7176.0 21 6577.0 22 5978.0 23 5525.5 24 5073.0 25 4825.5 26 4578.0 27 4751.0 28 4924.0 29 5064.5 30 5205.0 31 5837.5 32 6470.0 33 6994.0 34 7518.0 35 8742.5 36 9967.0 37 10639.0 38 11311.0 39 12948.5 40 14586.0 41 16425.5 42 18265.0 43 19994.0 44 21723.0 45 23148.5 46 24574.0 47 43611.0 48 62648.0 49 52929.0 50 43210.0 51 37446.5 52 31683.0 53 25535.5 54 19388.0 55 17149.0 56 14910.0 57 13777.5 58 12645.0 59 11562.5 60 10480.0 61 9098.5 62 7717.0 63 6989.0 64 6261.0 65 5394.5 66 4528.0 67 3931.0 68 3334.0 69 3078.5 70 2823.0 71 2583.5 72 2344.0 73 1912.5 74 1481.0 75 1091.0 76 701.0 77 510.0 78 319.0 79 249.0 80 179.0 81 156.0 82 133.0 83 87.5 84 42.0 85 27.0 86 12.0 87 12.5 88 13.0 89 12.0 90 11.0 91 7.0 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 548948.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.87984869422486 #Duplication Level Percentage of deduplicated Percentage of total 1 77.3720950551843 29.308432538455655 2 7.883333045364044 5.972389259291458 3 3.783816385990204 4.29991176564113 4 2.5464164265737406 3.8583147580440817 5 1.808190647071681 3.424699406069391 6 1.3785566255880777 3.1331709836218544 7 1.0265997757230496 2.722121092174001 8 0.7748339304454 2.3480473638738646 9 0.6211880318500711 2.1177457791429632 >10 2.6730958745254907 15.498853258026172 >50 0.07171261332452647 1.9201199803521425 >100 0.04716668527379318 3.7264766804370546 >500 0.00721939060313161 1.8734478653704096 >1k 0.003369048948128084 2.6557527301333943 >5k 9.625854137508812E-4 3.077442581495963 >10k+ 0.0014438781206263219 14.063073957870504 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 49406 9.000123873299474 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT 14746 2.6862289324307587 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 12985 2.3654335201148378 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 9912 1.8056355064596283 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATG 6968 1.2693369863812236 No Hit GAACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 3787 0.6898649781035726 No Hit GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG 2061 0.37544539737825805 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2019 0.36779439946953085 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGT 1912 0.3483025714639638 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 1903 0.34666307191209367 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCT 1726 0.3144195807253146 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCA 1159 0.21113110895749687 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGT 985 0.17943411762134118 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 824 0.15010529230455344 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 824 0.15010529230455344 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 823 0.149923125687679 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 809 0.14737279305143655 No Hit CATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 796 0.14500462703206862 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGCTCCATCG 696 0.1267879653446228 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 640 0.11658663479965316 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 636 0.11585796833215532 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 625 0.11385413554653627 No Hit CGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT 557 0.10146680559907315 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11257896922841508 0.0 2 0.0 0.0 0.0 0.703527474369157 0.0 3 0.0 0.0 0.0 0.9040929195479354 0.0 4 0.0 0.0 0.0 1.88906781698813 0.0 5 0.0 0.0 0.0 5.284835722144902 0.0 6 0.0 0.0 0.0 6.057586510926353 0.0 7 0.0 0.0 0.0 6.732695993063095 0.0 8 0.0 0.0 0.0 7.453893629269075 0.0 9 0.0 0.0 0.0 7.684880899465887 0.0 10 3.643332337489161E-4 0.0 0.0 9.90622062563303 0.0 11 3.643332337489161E-4 0.0 0.0 10.133928896726102 0.0 12 3.643332337489161E-4 0.0 0.0 11.701290468313939 0.0 13 3.643332337489161E-4 0.0 0.0 11.82024526913296 0.0 14 3.643332337489161E-4 0.0 0.0 11.927905739705764 0.0 15 3.643332337489161E-4 0.0 0.0 12.167819174129425 0.0 16 3.643332337489161E-4 0.0 0.0 12.367473786223831 0.0 17 3.643332337489161E-4 0.0 0.0 12.45728192834294 0.0 18 3.643332337489161E-4 0.0 0.0 12.533974074047087 0.0 19 3.643332337489161E-4 0.0 0.0 12.82999482646808 0.0 20 5.464998506233741E-4 0.0 0.0 12.884098311679795 0.0 21 5.464998506233741E-4 0.0 0.0 12.928364799580288 0.0 22 5.464998506233741E-4 0.0 0.0 13.027281272543119 0.0 23 7.286664674978322E-4 0.0 0.0 13.085938923176695 0.0 24 7.286664674978322E-4 0.0 0.0 13.148422072764633 0.0 25 7.286664674978322E-4 0.0 0.0 13.185948395840771 0.0 26 7.286664674978322E-4 0.0 0.0 13.242784380305602 0.0 27 7.286664674978322E-4 0.0 0.0 13.330224356405342 0.0 28 7.286664674978322E-4 0.0 0.0 13.375948177240831 0.0 29 7.286664674978322E-4 0.0 0.0 13.423311497628191 0.0 30 7.286664674978322E-4 0.0 0.0 13.477961482690528 0.0 31 9.108330843722903E-4 0.0 0.0 13.523138803675394 0.0 32 9.108330843722903E-4 0.0 0.0 13.570866457296502 0.0 33 9.108330843722903E-4 0.0 0.0 13.629524107930077 0.0 34 0.0010929997012467483 0.0 0.0 13.684902759459913 0.0 35 0.0012751663181212063 0.0 0.0 13.74283174362599 0.0 36 0.0014573329349956644 0.0 0.0 13.784365732273367 0.0 37 0.0014573329349956644 0.0 0.0 13.839380050569453 0.0 38 0.0014573329349956644 0.0 0.0 13.899677200754898 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGAGG 20 7.852883E-4 44.000004 2 TATAGCG 20 7.852883E-4 44.000004 1 CCGCAAT 20 7.852883E-4 44.000004 33 TTCGTAG 30 2.5252903E-6 44.0 1 GACGGTC 30 2.5252903E-6 44.0 29 CGGTCTA 30 2.5252903E-6 44.0 31 CGGACGG 30 2.5252903E-6 44.0 2 ATAGCGG 45 4.783942E-10 43.999996 2 TAGCCGT 45 4.783942E-10 43.999996 44 CGTTTTT 15620 0.0 43.507042 1 ATGATCT 225 0.0 42.044445 3 CCGATGA 625 0.0 41.536 18 AATGATC 235 0.0 41.191486 2 GAATCTG 1675 0.0 40.979103 1 CGGCTGT 795 0.0 40.955975 9 CTTCGGA 70 0.0 40.857143 13 ATGCGGG 70 0.0 40.857143 3 ACCGACT 65 0.0 40.615387 17 AATCTGT 1730 0.0 40.566475 2 ACGGCTG 805 0.0 40.44721 8 >>END_MODULE