##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546138_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 441910 Sequences flagged as poor quality 0 Sequence length 50 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.22597587744111 28.0 16.0 31.0 16.0 33.0 2 25.19967414179358 30.0 16.0 31.0 16.0 33.0 3 25.563370369532258 30.0 16.0 31.0 16.0 33.0 4 25.949319997284515 28.0 19.0 33.0 10.0 35.0 5 31.26356950510285 33.0 32.0 35.0 25.0 35.0 6 31.088778258016337 35.0 30.0 35.0 17.0 35.0 7 30.52383290715304 33.0 28.0 35.0 17.0 35.0 8 31.546799121993168 35.0 31.0 35.0 25.0 35.0 9 26.517564662487835 28.0 17.0 34.0 11.0 37.0 10 29.8145436853658 33.0 25.0 37.0 17.0 39.0 11 32.09509176076577 35.0 30.0 38.0 17.0 39.0 12 32.27752257246951 35.0 28.0 39.0 17.0 39.0 13 32.69406213934964 35.0 31.0 39.0 17.0 39.0 14 33.97035369192822 36.0 31.0 40.0 25.0 41.0 15 31.651716412844245 34.0 27.0 39.0 17.0 41.0 16 31.02281007444955 34.0 27.0 39.0 17.0 41.0 17 31.304964811839515 34.0 27.0 39.0 17.0 41.0 18 31.724183657305787 35.0 27.0 39.0 17.0 39.0 19 30.98151207259397 35.0 27.0 37.0 16.0 39.0 20 30.877441107917903 34.0 27.0 35.0 18.0 39.0 21 32.101280803783574 34.0 30.0 36.0 22.0 39.0 22 32.64113054694395 35.0 31.0 37.0 25.0 39.0 23 33.01069674820665 35.0 32.0 37.0 24.0 39.0 24 33.12812563644181 35.0 32.0 37.0 24.0 39.0 25 32.30989341721165 35.0 31.0 37.0 21.0 39.0 26 25.446351066959334 32.0 16.0 35.0 0.0 38.0 27 28.758984861170827 33.0 21.0 36.0 11.0 39.0 28 30.295822678826006 33.0 25.0 36.0 17.0 39.0 29 30.930336493856213 33.0 28.0 36.0 18.0 38.0 30 30.94763187074291 33.0 29.0 36.0 18.0 39.0 31 30.022801022832702 33.0 26.0 35.0 15.0 38.0 32 30.038799755606345 33.0 25.0 36.0 15.0 39.0 33 29.365739630241453 33.0 25.0 36.0 12.0 38.0 34 28.52408182661628 33.0 22.0 36.0 8.0 38.0 35 27.296030866013442 33.0 18.0 35.0 7.0 38.0 36 27.19386074087484 33.0 18.0 35.0 7.0 38.0 37 27.107241293476047 33.0 18.0 36.0 7.0 38.0 38 26.83054015523523 32.0 18.0 36.0 7.0 38.0 39 26.59588830304813 32.0 17.0 36.0 7.0 38.0 40 26.254723812541016 31.0 16.0 35.0 7.0 38.0 41 25.080195062343012 30.0 14.0 35.0 7.0 38.0 42 25.482028014754135 31.0 15.0 35.0 7.0 38.0 43 25.31129415491842 30.0 15.0 35.0 7.0 38.0 44 25.3569708764228 31.0 15.0 35.0 7.0 38.0 45 25.203034554547305 30.0 15.0 35.0 7.0 37.0 46 24.25703650064493 28.0 12.0 34.0 7.0 37.0 47 24.140429046638456 28.0 12.0 34.0 7.0 37.0 48 24.332612975492747 28.0 13.0 34.0 7.0 36.0 49 24.104638953633092 28.0 12.0 34.0 7.0 36.0 50 24.9502613654364 28.0 13.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 8.0 12 27.0 13 96.0 14 386.0 15 1005.0 16 2105.0 17 3497.0 18 4963.0 19 6740.0 20 8447.0 21 11145.0 22 14063.0 23 18087.0 24 23242.0 25 28674.0 26 32298.0 27 32625.0 28 31393.0 29 30151.0 30 30708.0 31 32169.0 32 33410.0 33 33715.0 34 30144.0 35 22232.0 36 8831.0 37 1709.0 38 40.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.761919847932838 16.67013645312394 13.117829422280556 39.45011427666267 2 49.141680432667286 28.4494580344414 14.02050191215406 8.388359620737255 3 18.157317100767127 26.004390034169855 47.06026113914598 8.778031725917042 4 16.751827295150594 16.570342377407165 56.642076440904255 10.035753886537984 5 21.19345568102102 19.184901903102443 46.64230273132539 12.979339684551153 6 11.643773619062706 33.09090086216651 48.26729424543459 6.9980312733362 7 41.42992917109819 7.592948790477699 48.27182005385712 2.7053019845669937 8 40.32427417347424 15.530085311488765 39.334253581045914 4.811386933991084 9 31.72636962277387 6.927881242786993 33.450928922178726 27.894820212260413 10 22.979792265393407 19.28446968839809 45.154669502839944 12.58106854336856 11 20.334004661582675 19.24984725396574 47.12995858885293 13.286189495598652 12 14.734221900386956 17.13787875359236 51.84358806091738 16.2843112851033 13 15.290896336358081 20.421126473716367 54.066212577221606 10.221764612703945 14 11.89178792061732 28.046434794415156 48.04552963273065 12.016247652236881 15 8.827815618564866 19.04256522821389 49.357561494421944 22.7720576587993 16 9.586114819759679 17.577108460998847 46.348125183860965 26.48865153538051 17 10.150709420470232 20.942273313570638 50.373831775700936 18.533185490258198 18 10.374284356543187 22.66886922676563 48.532054038152566 18.424792378538616 19 12.607544522640357 23.65210110656016 45.83987689801091 17.900477472788577 20 13.299314340023988 23.004457921296193 49.99026951189156 13.705958226788258 21 13.879522979792267 24.669729130365912 48.50603063972302 12.944717250118803 22 10.930053630829807 18.74024122558892 50.752641940666656 19.577063202914623 23 12.45592994048562 25.450204792831123 48.69543572220588 13.398429544477382 24 14.513136158946391 23.085017311217214 47.4852345500215 14.916611979814896 25 13.834038605145842 26.66402661175352 45.29655359688625 14.205381186214389 26 10.29327238577991 33.74985856848679 39.71396890769614 16.242900138037157 27 14.76929691566156 22.443257676902537 46.87696589803353 15.910479509402368 28 13.288452399809916 22.519517548822158 49.74067117738906 14.451358873978865 29 17.495643909393316 21.886356950510287 46.45900749021294 14.15899164988346 30 13.59100269285601 26.04059650155009 48.80609173813673 11.562309067457175 31 19.950216107352176 19.938675295874724 42.39234233214908 17.71876626462402 32 16.091059265461293 23.716820167002332 42.791066054173925 17.40105451336245 33 13.827476182933177 20.455522617727592 44.01439207078364 21.70260912855559 34 16.595460614152202 22.223303387567604 39.686135185897584 21.49510081238261 35 13.120771197755198 25.14765449978502 38.41845624674708 23.3131180557127 36 19.699486320744043 25.663370369532256 36.22977529361182 18.407368016111878 37 12.789255730804916 26.093095879251432 38.496752732456834 22.62089565748682 38 17.72555497725781 26.15939897264149 35.70274490280826 20.412301147292435 39 16.22977529361182 23.3823629245774 35.23862324907787 25.14923853273291 40 14.129800185558144 23.427168427960442 41.8001403000611 20.642891086420313 41 14.964585549093707 26.255798692041367 36.77513520852662 22.004480550338304 42 15.818153017582764 24.98110474983594 36.954809802901046 22.245932429680252 43 18.306895069131723 25.43934285261705 34.07503790364554 22.178724174605687 44 16.114819759679573 23.87793894684438 36.86361476318707 23.143626530288973 45 16.981964653436222 23.262881582222626 35.1363399787287 24.618813785612456 46 20.17899572311104 23.307913376026793 34.546174560430856 21.966916340431307 47 14.527392455477358 23.386662442578807 40.93186395419882 21.154081147745014 48 15.23771808739336 26.04693263334163 34.52331922789708 24.192030051367926 49 14.258333144757982 23.370143241836573 38.83822497793668 23.53329863546876 50 15.676721504378719 22.152248195333893 39.6888506709511 22.48217962933629 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 8223.0 1 7405.5 2 6588.0 3 22546.0 4 38504.0 5 28035.0 6 17566.0 7 15368.5 8 13171.0 9 13038.5 10 12906.0 11 12650.0 12 12394.0 13 11957.0 14 11520.0 15 11091.0 16 10662.0 17 10048.0 18 9434.0 19 8756.0 20 8078.0 21 7582.0 22 7086.0 23 6474.5 24 5863.0 25 5399.0 26 4935.0 27 4822.5 28 4710.0 29 4833.0 30 4956.0 31 5189.0 32 5422.0 33 5585.5 34 5749.0 35 6312.5 36 6876.0 37 7161.5 38 7447.0 39 8092.0 40 8737.0 41 9789.5 42 10842.0 43 12042.5 44 13243.0 45 15676.0 46 18109.0 47 23505.0 48 28901.0 49 32979.0 50 37057.0 51 33253.0 52 29449.0 53 26098.5 54 22748.0 55 19752.5 56 16757.0 57 14511.0 58 12265.0 59 11142.5 60 10020.0 61 8722.5 62 7425.0 63 6713.0 64 6001.0 65 5316.0 66 4631.0 67 4167.0 68 3703.0 69 3509.0 70 3315.0 71 2981.0 72 2647.0 73 2199.0 74 1751.0 75 1334.0 76 917.0 77 697.5 78 478.0 79 413.5 80 349.0 81 290.5 82 232.0 83 168.5 84 105.0 85 88.5 86 72.0 87 57.5 88 43.0 89 28.0 90 13.0 91 8.5 92 4.0 93 2.5 94 1.0 95 3.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 441910.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.518585808884026 #Duplication Level Percentage of deduplicated Percentage of total 1 86.24286001862602 47.01838764329035 2 6.470030070853706 7.0547377920779555 3 2.5054768234745244 4.097851595782981 4 1.3552072257230918 2.9553592569761613 5 0.8481882666183653 2.312101239786097 6 0.5767109780802167 1.8864880167235032 7 0.39377094116695815 1.5027484391539079 8 0.3084720579275614 1.345396828781344 9 0.2568226090225386 1.2601444902891068 >10 0.9367973737403396 8.164703668848585 >50 0.04972406341963092 1.872447423503482 >100 0.04484045004802695 4.91977331051063 >500 0.00621550792744928 2.496677245789489 >1k 0.003995683667645965 5.634043262262911 >5k 4.439648519606629E-4 1.6688889587705793 >10k+ 4.439648519606629E-4 5.810250827452902 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24005 5.432101559141002 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6895 1.5602724536670363 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 4563 1.0325631916000995 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCGAGCTCCATCGTATG 4243 0.960150256839628 No Hit GAATGATACCTGTCCCTTATACACATCTGACGCGAGCTCCATCGTATGCC 2580 0.5838292865063022 No Hit GAATCTTTCTCTTACCCACATCTGACGCGAGCTCCATCGTATGCCGTCTT 2491 0.5636894390260461 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC 2404 0.5440021723880428 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT 2320 0.5249937770134191 No Hit GAACTGTCCCTTATCCACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 1796 0.4064175963431468 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATG 1597 0.3613858025389785 No Hit CGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1283 0.29033061030526575 No Hit GAACTGTCCCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 993 0.2247063881785884 No Hit GAATCTGTCTCTTACCCACATCTGACGCGAGCTCCATCGTATGCCGTCTT 932 0.21090267248987352 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCA 892 0.20185105564481456 No Hit AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 815 0.1844266932180761 No Hit GCTGTCTCCTATACCCATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG 785 0.17763798058428187 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 784 0.1774116901631554 No Hit GAATGACTCTCTCTCCTACACATCTGACGCGAGCTCCATCGTATGCCGTC 718 0.16247652236880814 No Hit GAATGCTGCCTCTTCCACACATCTGACGCGAGCTCCATCGTATGCCGTCT 697 0.15772442352515217 No Hit GAATCTTTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT 681 0.1541037767871286 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCCT 675 0.15274603426036976 No Hit GAATGATACCTGGCCCTTATACACATCTGACGCGAGCTCCATCGTATGCC 633 0.14324183657305786 No Hit GAATGATCCGTCTCCCATACACATCTGACGCGAGCTCCATCGTATGCCGT 627 0.14188409404629904 No Hit GAATGATACGGCGACCGTCTCTTATACACATCTGACGCGAGCTCCATCGT 572 0.12943812088434295 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCT 511 0.11563440519562808 No Hit GAATGACTCTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC 497 0.11246633929985744 No Hit CGTTTTTTCTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 486 0.10997714466746623 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 485 0.10975085424633976 No Hit AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 477 0.10794053087732795 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGCTCCATCG 444 0.10047294698015434 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.077391324025254 0.0 2 0.0 0.0 0.0 0.37066370980516394 0.0 3 0.0 0.0 0.0 0.6854336855920888 0.0 4 0.0 0.0 0.0 0.8961100676608359 0.0 5 0.0 0.0 0.0 2.4699599465954605 0.0 6 0.0 0.0 0.0 2.6623068045529634 0.0 7 0.0 0.0 0.0 2.8272725215541628 0.0 8 0.0 0.0 0.0 3.0370437419384038 0.0 9 0.0 0.0 0.0 3.216718336312824 0.0 10 0.0 0.0 0.0 4.456563553664774 0.0 11 0.0 0.0 0.0 4.6310334683532846 0.0 12 0.0 0.0 0.0 5.488221583580367 0.0 13 0.0 0.0 0.0 5.556108709918309 0.0 14 0.0 0.0 0.0 5.604082279197121 0.0 15 0.0 0.0 0.0 5.703423774071643 0.0 16 0.0 0.0 0.0 5.884229820551696 0.0 17 0.0 0.0 0.0 5.953474689416397 0.0 18 0.0 0.0 0.0 6.005974067117739 0.0 19 0.0 0.0 0.0 6.3598922857595435 0.0 20 0.0 0.0 0.0 6.410807630513 0.0 21 0.0 0.0 0.0 6.442488289470707 0.0 22 0.0 0.0 0.0 6.514901224231179 0.0 23 0.0 4.525808422529474E-4 0.0 6.550428820348035 0.0 24 0.0 4.525808422529474E-4 0.0 6.596365775836709 0.0 25 0.0 4.525808422529474E-4 0.0 6.621710303002874 0.0 26 0.0 4.525808422529474E-4 0.0 6.6667420968070426 0.0 27 0.0 4.525808422529474E-4 0.0 6.733950351881605 0.0 28 0.0 4.525808422529474E-4 0.0 6.779434726528026 0.0 29 0.0 4.525808422529474E-4 0.0 6.821072164015297 0.0 30 0.0 4.525808422529474E-4 0.0 6.860899278133557 0.0 31 0.0 4.525808422529474E-4 0.0 6.896426874250413 0.0 32 0.0 4.525808422529474E-4 0.0 6.934896245841913 0.0 33 0.0 4.525808422529474E-4 0.0 6.980833201330587 0.0 34 0.0 4.525808422529474E-4 0.0 7.027222737661515 0.0 35 0.0 4.525808422529474E-4 0.0 7.089905184313548 0.0 36 0.0 4.525808422529474E-4 0.0 7.1267905229571635 0.0 37 0.0 4.525808422529474E-4 0.0 7.164807313706411 0.0 38 0.0 4.525808422529474E-4 0.0 7.218211853092258 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGTG 30 2.5241661E-6 44.000004 29 GCGGAAT 30 2.5241661E-6 44.000004 8 CGGGTAC 40 8.292773E-9 44.0 6 ATAGGCG 35 1.4433863E-7 44.0 4 GACCGCC 40 8.292773E-9 44.0 13 CACGACG 50 2.7284841E-11 44.0 26 TACGGGA 35 1.4433863E-7 44.0 4 TGCGGGT 20 7.851217E-4 44.0 4 ATCCGTC 125 0.0 44.0 6 GTAATCA 20 7.851217E-4 44.0 30 CTAACGC 40 8.292773E-9 44.0 24 GCGATTT 20 7.851217E-4 44.0 8 CGTAAGG 25 4.4383785E-5 44.0 2 TAGGCAA 20 7.851217E-4 44.0 5 TCATACG 20 7.851217E-4 44.0 26 AATAGCG 20 7.851217E-4 44.0 1 GCGTAGG 50 2.7284841E-11 44.0 2 TGCGTAG 20 7.851217E-4 44.0 1 CGTTTTT 13785 0.0 43.585056 1 TGATCCG 165 0.0 42.666668 4 >>END_MODULE