SRR1546137_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546137_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1054666
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23001	2.1808800131984913	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3248	0.3079647964379244	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3017	0.28606212772574446	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC	2802	0.2656765269763129	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2785	0.2640646422658927	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTT	2546	0.24140343957233854	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATG	1703	0.16147292128503243	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1422	0.1348294151892637	No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1400	0.13274344674048466	No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1151	0.10913407657021275	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATC	20	7.856187E-4	44.0	32
TCGTTAA	25	4.4425895E-5	44.0	35
GATCGTA	20	7.856187E-4	44.0	9
CGAGTTA	20	7.856187E-4	44.0	32
ACGATTG	55	1.8189894E-12	44.0	1
GTATGCG	25	4.4425895E-5	44.0	1
TACGACA	20	7.856187E-4	44.0	42
CGTCGCA	25	4.4425895E-5	44.0	36
TCGAGTA	20	7.856187E-4	44.0	21
GACGATT	20	7.856187E-4	44.0	44
CGCAACA	25	4.4425895E-5	44.0	37
CGTTTTT	13645	0.0	43.32283	1
GCGTAAG	70	0.0	40.857143	1
CGTTGAT	65	0.0	40.615383	25
TACGGGA	170	0.0	40.11765	4
TCACGAC	280	0.0	40.07143	25
CGGTCTA	280	0.0	40.07143	31
GATCGCT	55	7.8216544E-11	40.0	10
CGCATCG	55	7.8216544E-11	40.0	21
TAAGGGC	365	0.0	39.78082	4