SRR1546136_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546136_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1060785
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23832	2.246638102914351	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3169	0.2987410266924966	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3078	0.2901624740168837	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2841	0.26782052913644144	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC	2674	0.25207747092954746	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTT	2633	0.24821240873504055	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATG	1741	0.16412373855211	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1400	0.13197773347096725	No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1323	0.12471895813006406	No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1095	0.10322544153622082	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	30	2.5275313E-6	44.0	1
GCGAACG	45	4.802132E-10	44.0	1
ATCGTTC	20	7.856209E-4	44.0	35
TCGGATT	20	7.856209E-4	44.0	12
CCGTAGG	30	2.5275313E-6	44.0	2
GTATGCG	20	7.856209E-4	44.0	1
GTAAGCG	25	4.442607E-5	44.0	1
GATTACG	25	4.442607E-5	44.0	1
CGATAGT	20	7.856209E-4	44.0	10
CCCGCTA	35	1.445951E-7	44.0	38
CGTTTTT	14005	0.0	43.37165	1
CGCATCG	90	0.0	41.555557	21
CGGTCTA	315	0.0	41.206352	31
TAGGGTA	810	0.0	40.197533	5
GCGTAAG	110	0.0	40.000004	1
GTTTTTT	15565	0.0	39.971733	2
TCACGAC	325	0.0	39.93846	25
AGGGTAC	945	0.0	39.809525	6
CATATGC	1670	0.0	39.78443	33
TAACGGG	205	0.0	39.707317	3