##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546136_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1060785 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.799771867060713 31.0 28.0 31.0 16.0 33.0 2 28.804823786158362 31.0 28.0 33.0 16.0 33.0 3 28.3196208468257 31.0 28.0 33.0 16.0 34.0 4 32.31744604231772 35.0 32.0 35.0 26.0 37.0 5 33.76077621761243 35.0 33.0 35.0 30.0 37.0 6 33.55012844261561 35.0 33.0 37.0 28.0 37.0 7 34.40000659888668 35.0 35.0 37.0 31.0 37.0 8 34.73492649311595 35.0 35.0 37.0 32.0 37.0 9 36.55455818096976 39.0 37.0 39.0 32.0 39.0 10 36.07942608539902 38.0 35.0 39.0 31.0 39.0 11 36.32447197122885 38.0 35.0 39.0 32.0 39.0 12 35.091776373157614 37.0 34.0 39.0 28.0 39.0 13 35.54045447475219 37.0 35.0 39.0 30.0 39.0 14 36.30965087176006 38.0 35.0 40.0 30.0 41.0 15 36.761434220883594 38.0 35.0 40.0 31.0 41.0 16 36.36093930438307 38.0 34.0 40.0 31.0 41.0 17 35.79618584350269 37.0 34.0 40.0 30.0 41.0 18 35.578911843587534 38.0 34.0 39.0 29.0 40.0 19 35.054218338306065 37.0 33.0 39.0 27.0 40.0 20 35.24269385407976 36.0 34.0 39.0 29.0 40.0 21 35.49113533845218 36.0 34.0 39.0 30.0 40.0 22 35.86780261787261 37.0 34.0 40.0 31.0 40.0 23 36.25475661891901 37.0 35.0 40.0 31.0 41.0 24 35.85618574923288 37.0 35.0 40.0 31.0 41.0 25 35.60725783264281 36.0 34.0 40.0 30.0 41.0 26 35.70017487049685 37.0 34.0 40.0 30.0 41.0 27 36.037262027649334 37.0 35.0 40.0 31.0 41.0 28 35.93678172296931 37.0 35.0 40.0 31.0 41.0 29 35.98774869554151 37.0 35.0 40.0 31.0 41.0 30 35.644871486682035 37.0 35.0 40.0 30.0 41.0 31 34.97028238521472 36.0 34.0 40.0 28.0 41.0 32 34.91208020475403 37.0 34.0 40.0 27.0 41.0 33 34.58190585274113 37.0 34.0 40.0 24.0 41.0 34 34.16500987476256 37.0 34.0 40.0 21.0 41.0 35 33.89524267405742 37.0 33.0 40.0 19.0 41.0 36 33.53600399703993 36.0 33.0 40.0 18.0 41.0 37 33.46018467455705 36.0 33.0 40.0 18.0 41.0 38 33.285934473055335 36.0 33.0 40.0 17.0 41.0 39 33.098790989691594 36.0 33.0 40.0 15.0 41.0 40 32.85514972402513 36.0 32.0 40.0 15.0 40.0 41 32.51216410488459 35.0 32.0 39.0 14.0 40.0 42 32.71584157015795 36.0 32.0 40.0 15.0 40.0 43 32.531973962678585 35.0 32.0 39.0 14.0 40.0 44 32.3664210938126 35.0 31.0 39.0 12.0 40.0 45 32.21969861941864 35.0 31.0 39.0 12.0 40.0 46 32.02836012952672 35.0 31.0 39.0 12.0 40.0 47 31.96383433023657 35.0 31.0 38.0 12.0 40.0 48 31.93648760116329 35.0 31.0 38.0 12.0 40.0 49 31.962936881648968 35.0 31.0 38.0 12.0 40.0 50 32.2197570667006 35.0 31.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 12.0 12 8.0 13 17.0 14 48.0 15 121.0 16 290.0 17 700.0 18 1408.0 19 2138.0 20 3312.0 21 4797.0 22 6802.0 23 9563.0 24 13874.0 25 20994.0 26 29801.0 27 34036.0 28 32577.0 29 31505.0 30 33781.0 31 40164.0 32 52704.0 33 77950.0 34 116736.0 35 99817.0 36 109467.0 37 149677.0 38 158466.0 39 30014.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.67011694169884 21.44157392874145 24.67644244592448 23.211866683635233 2 41.47409701306108 19.988310543606858 26.242263983747883 12.295328459584177 3 30.434630957262783 18.960958158344997 37.745348963267766 12.859061921124452 4 26.977379959181174 22.862974118223768 35.77982343264658 14.379822489948483 5 20.02187059583233 27.49133896124097 36.12673633205598 16.360054110870724 6 18.261193361520007 38.072088123418034 34.183364206695984 9.483354308365973 7 74.52000169685658 4.718298241396701 18.21198452089726 2.549715540849465 8 75.17404563601484 4.470651451519394 17.36110521924801 2.9941976932177585 9 71.71990554165076 4.9718840292802025 18.48357584241859 4.824634586650452 10 38.015526237644764 24.049642481747007 25.042303577067926 12.892527703540303 11 33.22690271826996 21.2730195091371 29.266816555663965 16.233261216928973 12 29.363160301097775 19.016388806402805 35.66773662900587 15.952714263493545 13 20.679402517946617 27.28413391969155 36.09232785154391 15.944135710817934 14 16.518050311797396 33.4457029464029 35.42772569370796 14.608521048091744 15 15.912932403833011 23.68943753918089 44.13816183298218 16.25946822400392 16 17.979703709988357 17.644291727352858 45.34566382443191 19.03034073822688 17 17.06877453960982 17.884019853221904 36.13126128291783 28.915944324250436 18 20.033088703177366 23.26560047511984 38.20679968136804 18.49451114033475 19 23.76862417926347 25.455488152641674 32.112067949678774 18.66381971841608 20 24.825294475317808 22.357687938649207 32.19172593880947 20.625291647223516 21 22.278407028757005 23.95678671926922 35.41245398454918 18.352352267424596 22 19.571543715267467 19.511965195586285 34.3522014357292 26.564289653417045 23 17.9717850459801 27.110017581319497 32.77987528104187 22.138322091658537 24 19.33860301569121 24.98819270634483 39.04759211338772 16.625612164576236 25 23.354402635783877 20.931479988876163 36.11740362090339 19.596713754436575 26 16.711869040380474 25.81729568197137 33.26630749869201 24.20452777895615 27 18.07538756675481 24.35837610825945 37.470835277648156 20.095401047337585 28 16.910684068873522 24.388542447338526 41.40857949537371 17.29219398841424 29 18.63629293400642 25.13242551506667 37.77315855710629 18.458122993820613 30 20.067214374260573 23.17265044283243 40.29666709088081 16.463468092026186 31 27.407061751438793 23.094029421607583 31.565114514251235 17.933794312702386 32 24.826708522462138 25.49234764820392 32.04419368675085 17.63675014258309 33 23.227892551270994 23.186225295418016 30.272392614903115 23.31348953840788 34 19.082754752376776 25.80042138604901 31.787779804578687 23.329044056995528 35 19.856521349755134 23.66502165848876 33.179107924791545 23.29934906696456 36 28.167913384898917 24.283620149229108 28.774256800388393 18.77420966548358 37 19.61085422587989 27.67563643905221 31.058791366770834 21.654717968297064 38 21.355976941604567 30.84140518578223 26.894799605952198 20.90781826666101 39 19.520449478452278 25.302016902576863 29.39087562512667 25.78665799384418 40 21.12303624202831 23.40125473116607 33.987942891349334 21.48776613545629 41 18.708032259128853 22.554523301140193 34.26519040144799 24.47225403828297 42 22.02321865410993 27.00698067940252 27.608799144030126 23.361001522457425 43 20.695428385582375 23.872886588705533 29.674627752089254 25.757057273622834 44 20.365766861333825 25.085196340445993 32.806647906974554 21.742388891245636 45 21.5692152509698 28.189312631683137 29.30216773427226 20.9393043830748 46 24.483095066389513 25.228203641642743 29.930476015403684 20.358225276564053 47 22.32808721842786 26.620380190142207 29.79482175935746 21.256710832072475 48 20.462204876577253 28.603911254401222 30.226106138378654 20.707777730642874 49 20.54044881856361 26.567400557134572 31.848018212927222 21.044132411374594 50 20.018476882685935 25.49875799525823 33.47322973081256 21.00953539124328 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 760.0 1 1245.0 2 1730.0 3 19023.5 4 36317.0 5 24907.5 6 13498.0 7 13567.5 8 13637.0 9 13929.5 10 14222.0 11 13955.0 12 13688.0 13 12928.5 14 12169.0 15 11152.5 16 10136.0 17 9449.5 18 8763.0 19 8008.0 20 7253.0 21 6836.0 22 6419.0 23 6278.5 24 6138.0 25 6311.0 26 6484.0 27 7657.0 28 8830.0 29 10275.0 30 11720.0 31 12404.5 32 13089.0 33 16058.0 34 19027.0 35 20323.0 36 21619.0 37 23992.0 38 26365.0 39 32043.5 40 37722.0 41 46995.5 42 56269.0 43 68549.5 44 80830.0 45 83845.5 46 86861.0 47 89024.5 48 91188.0 49 93516.0 50 95844.0 51 85977.5 52 76111.0 53 65906.0 54 55701.0 55 51084.0 56 46467.0 57 44787.0 58 43107.0 59 39822.5 60 36538.0 61 32729.0 62 28920.0 63 26074.5 64 23229.0 65 19279.0 66 15329.0 67 13199.0 68 11069.0 69 9961.5 70 8854.0 71 7918.0 72 6982.0 73 5463.5 74 3945.0 75 2995.5 76 2046.0 77 1456.5 78 867.0 79 683.5 80 500.0 81 405.0 82 310.0 83 207.5 84 105.0 85 81.0 86 57.0 87 37.5 88 18.0 89 22.0 90 26.0 91 18.5 92 11.0 93 9.0 94 7.0 95 6.5 96 6.0 97 3.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1060785.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.997213688376455 #Duplication Level Percentage of deduplicated Percentage of total 1 77.07147872391103 21.577866591124963 2 7.40589513421768 4.146888572527995 3 3.212095193317194 2.6978914654412507 4 1.938436445231656 2.170832775139501 5 1.426820129394915 1.9973494028773187 6 1.1079203942348326 1.8611210416261736 7 0.8372004119890287 1.6407495184117549 8 0.6844474010131456 1.5330096115695144 9 0.5317670786780634 1.3399196880774091 >10 4.608599771285236 27.71979031003879 >50 0.9148697527294941 18.137310839639536 >100 0.2492629204359433 9.498973943004628 >500 0.007471095707887976 1.4177913624340968 >1k 0.003395952594494535 1.994624798317122 >5k 0.0 0.0 >10k+ 3.3959525944945345E-4 2.265880079769943 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23832 2.246638102914351 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3169 0.2987410266924966 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3078 0.2901624740168837 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2841 0.26782052913644144 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC 2674 0.25207747092954746 No Hit GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTT 2633 0.24821240873504055 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATG 1741 0.16412373855211 No Hit GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1400 0.13197773347096725 No Hit GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1323 0.12471895813006406 No Hit GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1095 0.10322544153622082 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04345838223579707 0.0 2 0.0 0.0 0.0 0.1903307456270592 0.0 3 0.0 0.0 0.0 0.24915510683126174 0.0 4 9.426980962211947E-5 0.0 0.0 0.40460602289813674 0.0 5 9.426980962211947E-5 0.0 0.0 0.8674707881427434 0.0 6 9.426980962211947E-5 0.0 0.0 1.081840335223443 0.0 7 9.426980962211947E-5 0.0 0.0 1.241062043675203 0.0 8 9.426980962211947E-5 0.0 0.0 1.5279250743553123 0.0 9 9.426980962211947E-5 0.0 0.0 1.6156902671135056 0.0 10 9.426980962211947E-5 0.0 0.0 2.041224187747753 0.0 11 9.426980962211947E-5 0.0 0.0 2.2395678671926924 0.0 12 9.426980962211947E-5 0.0 0.0 2.577902213926479 0.0 13 2.828094288663584E-4 0.0 0.0 2.666421565161649 0.0 14 3.770792384884779E-4 0.0 0.0 2.702715441866165 0.0 15 3.770792384884779E-4 0.0 0.0 2.7714381330806903 0.0 16 3.770792384884779E-4 0.0 0.0 2.88352493672139 0.0 17 3.770792384884779E-4 0.0 0.0 3.011071989140118 0.0 18 3.770792384884779E-4 0.0 0.0 3.2034766705788638 0.0 19 3.770792384884779E-4 0.0 0.0 3.3088703177363934 0.0 20 3.770792384884779E-4 0.0 0.0 3.3857002125784206 0.0 21 4.7134904811059735E-4 0.0 0.0 3.48128979953525 0.0 22 4.7134904811059735E-4 0.0 0.0 3.592716714508595 0.0 23 4.7134904811059735E-4 0.0 0.0 3.7241288291218297 0.0 24 5.656188577327168E-4 0.0 0.0 3.827637080086917 0.0 25 5.656188577327168E-4 0.0 0.0 3.8997534844478383 0.0 26 5.656188577327168E-4 0.0 0.0 3.9844077734885013 0.0 27 6.598886673548363E-4 0.0 0.0 4.07952601139722 0.0 28 7.541584769769558E-4 0.0 0.0 4.185862356650971 0.0 29 9.426980962211947E-4 0.0 0.0 4.290219035902657 0.0 30 9.426980962211947E-4 0.0 0.0 4.3958954924890525 0.0 31 9.426980962211947E-4 0.0 0.0 4.498272505738675 0.0 32 9.426980962211947E-4 0.0 0.0 4.592636585170416 0.0 33 0.0010369679058433142 0.0 0.0 4.719335209302545 0.0 34 0.0010369679058433142 0.0 0.0 4.83698393171095 0.0 35 0.0010369679058433142 0.0 0.0 5.005726890934544 0.0 36 0.0010369679058433142 0.0 0.0 5.1198876303869305 0.0 37 0.0010369679058433142 0.0 0.0 5.234236909458561 0.0 38 0.0010369679058433142 0.0 0.0 5.36894846740857 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAG 30 2.5275313E-6 44.0 1 GCGAACG 45 4.802132E-10 44.0 1 ATCGTTC 20 7.856209E-4 44.0 35 TCGGATT 20 7.856209E-4 44.0 12 CCGTAGG 30 2.5275313E-6 44.0 2 GTATGCG 20 7.856209E-4 44.0 1 GTAAGCG 25 4.442607E-5 44.0 1 GATTACG 25 4.442607E-5 44.0 1 CGATAGT 20 7.856209E-4 44.0 10 CCCGCTA 35 1.445951E-7 44.0 38 CGTTTTT 14005 0.0 43.37165 1 CGCATCG 90 0.0 41.555557 21 CGGTCTA 315 0.0 41.206352 31 TAGGGTA 810 0.0 40.197533 5 GCGTAAG 110 0.0 40.000004 1 GTTTTTT 15565 0.0 39.971733 2 TCACGAC 325 0.0 39.93846 25 AGGGTAC 945 0.0 39.809525 6 CATATGC 1670 0.0 39.78443 33 TAACGGG 205 0.0 39.707317 3 >>END_MODULE