SRR1546135_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546135_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1045579
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23830	2.279119989976845	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3160	0.30222489166289684	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2999	0.28682672471424925	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2810	0.26875061568757597	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC	2681	0.2564129539709577	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTT	2675	0.25583910923995223	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATG	1719	0.16440651543307583	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1390	0.13294069601627423	No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1361	0.13016711314974763	No Hit
GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1046	0.1000402647719589	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAT	25	4.442563E-5	44.0	32
CCGTCGA	25	4.442563E-5	44.0	35
GTAGACG	20	7.856156E-4	44.0	1
AATTCGC	80	0.0	44.0	13
ATGCGTA	20	7.856156E-4	44.0	43
TATAGCG	20	7.856156E-4	44.0	1
CCAACGA	25	4.442563E-5	44.0	31
ATACGAG	35	1.4459147E-7	44.0	1
GCGTAAG	40	8.310963E-9	44.0	1
CTTACGT	20	7.856156E-4	44.0	21
CGTTTTT	13445	0.0	43.32912	1
CGGTCTA	285	0.0	41.68421	31
AGGGTAC	815	0.0	41.300613	6
TCACGAC	295	0.0	41.01695	25
ATCGTAG	70	0.0	40.857143	1
ATAGCGG	135	0.0	40.74074	2
CCGCAAT	65	0.0	40.615383	33
CATATGC	1565	0.0	40.485626	33
CTCACGA	295	0.0	40.271187	24
GTTGATC	1615	0.0	40.185757	16