##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546135_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1045579 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.684829171205617 31.0 28.0 31.0 16.0 33.0 2 28.709249133733557 31.0 28.0 33.0 16.0 33.0 3 28.22159301210143 31.0 27.0 33.0 16.0 34.0 4 32.21714762825191 35.0 32.0 35.0 26.0 37.0 5 33.71274480455327 35.0 33.0 35.0 30.0 37.0 6 33.49237790736042 35.0 33.0 37.0 28.0 37.0 7 34.31249862516366 35.0 35.0 37.0 31.0 37.0 8 34.69789179009907 35.0 35.0 37.0 32.0 37.0 9 36.53761504391347 39.0 37.0 39.0 32.0 39.0 10 36.16331716685205 38.0 35.0 39.0 31.0 39.0 11 36.344973454899154 38.0 35.0 39.0 32.0 39.0 12 35.27134248105595 37.0 34.0 39.0 29.0 39.0 13 35.612188079523406 37.0 35.0 39.0 30.0 39.0 14 36.37739855142462 38.0 35.0 40.0 30.0 41.0 15 36.73164724999259 38.0 35.0 40.0 31.0 41.0 16 36.32078972511881 38.0 34.0 40.0 31.0 41.0 17 35.74717453200571 37.0 34.0 40.0 29.0 41.0 18 35.514179225099205 37.0 34.0 39.0 29.0 40.0 19 34.95244835636523 37.0 33.0 39.0 27.0 40.0 20 35.330015235577605 36.0 34.0 39.0 30.0 40.0 21 35.57435449640821 36.0 34.0 39.0 30.0 40.0 22 35.885644222005226 37.0 34.0 40.0 31.0 41.0 23 36.23265195647579 37.0 35.0 40.0 31.0 41.0 24 35.8521001282543 37.0 35.0 40.0 31.0 41.0 25 35.61276957551749 36.0 34.0 40.0 30.0 41.0 26 35.698321217239446 37.0 34.0 40.0 30.0 41.0 27 36.02763349302157 37.0 35.0 40.0 31.0 41.0 28 35.936996630575024 37.0 35.0 40.0 31.0 41.0 29 35.96990949512184 37.0 35.0 40.0 31.0 41.0 30 35.6154226509905 37.0 35.0 40.0 30.0 41.0 31 34.92616435486941 36.0 34.0 40.0 27.0 41.0 32 34.883792616339846 37.0 34.0 40.0 26.0 41.0 33 34.563631251201485 37.0 34.0 40.0 24.0 41.0 34 34.15037601175999 37.0 34.0 40.0 21.0 41.0 35 33.842946348386874 37.0 33.0 40.0 18.0 41.0 36 33.530273656988136 36.0 33.0 40.0 18.0 41.0 37 33.471235554654406 37.0 33.0 40.0 18.0 41.0 38 33.273292596733484 36.0 33.0 40.0 16.0 41.0 39 33.06187193889701 36.0 33.0 40.0 15.0 41.0 40 32.879078481874636 36.0 32.0 40.0 15.0 41.0 41 32.5229074034578 35.0 32.0 39.0 14.0 40.0 42 32.75161800303946 36.0 32.0 40.0 14.0 41.0 43 32.55770056590654 35.0 32.0 39.0 13.0 40.0 44 32.40374950147239 35.0 32.0 39.0 12.0 40.0 45 32.286823855490596 35.0 31.0 39.0 12.0 40.0 46 32.101999944528345 35.0 31.0 39.0 12.0 40.0 47 32.05537410372626 35.0 31.0 39.0 12.0 40.0 48 32.01652481543719 35.0 31.0 39.0 12.0 40.0 49 32.047836653184504 35.0 31.0 39.0 12.0 40.0 50 32.23269021279119 35.0 31.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 6.0 12 8.0 13 20.0 14 35.0 15 104.0 16 266.0 17 690.0 18 1310.0 19 2154.0 20 3279.0 21 4883.0 22 6741.0 23 9505.0 24 14044.0 25 21203.0 26 29313.0 27 33610.0 28 32174.0 29 31123.0 30 33470.0 31 40296.0 32 51231.0 33 76027.0 34 114819.0 35 97594.0 36 106424.0 37 144610.0 38 157146.0 39 33489.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.592714658576732 21.47699982497736 24.631424311314593 23.29886120513132 2 41.47778407944306 19.989689922999602 26.205767330828184 12.326758666729152 3 30.494395927997786 19.030221532758404 37.634363352745225 12.841019186498581 4 26.967737492814987 22.920888808975697 35.69266406459962 14.418709633609703 5 20.039136210654576 27.576969315565826 36.05935084771213 16.32454362606747 6 18.167254698114633 38.02562981850247 34.20573672577586 9.60137875760703 7 74.4187670180828 4.766067413366183 18.259069855075513 2.5560957134755 8 75.03804112362624 4.547719493218589 17.398494040144264 3.015745343010906 9 71.61381397292791 5.019993706836116 18.5291594418021 4.837032878433863 10 38.05279180243674 24.230115562764745 25.03990611900201 12.67718651579651 11 33.158661373267826 21.320244572624354 29.242649288097788 16.27844476601003 12 29.26531615497251 19.370798380610168 35.72575577742093 15.638129686996391 13 20.630483205955745 27.325434041808418 36.15374830596254 15.890334446273307 14 16.520415960917347 33.44118426249953 35.387187386127685 14.65121239045543 15 15.973446291480606 23.668704134264367 44.11842624995337 16.239423324301654 16 17.97893798555633 17.722333750008367 45.31489251409984 18.98383575033546 17 17.02989444126173 17.94708960298552 36.18712694114936 28.835889014603396 18 20.054725659180225 23.331761636375635 38.22733624145091 18.38617646299323 19 23.703039177336194 25.53446463634025 32.15146822956467 18.611027956758885 20 24.819645383084396 22.525987993255413 32.20502707112519 20.449339552535008 21 22.28592961411811 24.127397355914763 35.20680885901496 18.37986417095217 22 19.578243250868656 19.658103309266924 34.33944254810014 26.424210891764275 23 18.12498146959723 27.118563016280934 32.68763048990081 22.06882502422103 24 19.345549212445928 24.973627052570873 39.02469349518305 16.65613023980015 25 23.279159202700132 21.03609578998813 36.1295511864718 19.555193820839936 26 16.64991358854759 25.94275516245066 33.24770294736218 24.15962830163957 27 17.953688817392084 24.508525898090912 37.48870243185833 20.04908285265867 28 16.965719472177618 24.363343181146526 41.40767938147189 17.26325796520397 29 18.652727340545287 25.116227468225738 37.87757787790306 18.35346731332592 30 20.020486256896895 23.239468275472248 40.29021240862718 16.449833059003673 31 27.468608302194287 23.074105352154163 31.591395772103304 17.865890573548246 32 24.816393596275365 25.43662410970381 32.046167721425164 17.700814572595664 33 23.243580829377787 23.14975721585839 30.27863030913972 23.3280316456241 34 19.156563014368118 25.77863556938309 31.801709866016818 23.263091550231977 35 19.837716710071646 23.700361235258168 33.298201283690666 23.163720770979523 36 28.17128117531052 24.25459960462098 28.810448564862146 18.76367065520635 37 19.531953109234212 27.736211228419847 31.10917491648168 21.622660745864252 38 21.37380341418487 30.836407387677067 26.897154590901305 20.892634607236758 39 19.550029218260885 25.323959260849733 29.45726721749385 25.668744303395535 40 21.041260392567178 23.487560480843626 34.01426386719702 21.456915259392165 41 18.765296548610866 22.603552672729656 34.23385511759513 24.397295661064348 42 22.049983788886347 27.05381420246581 27.615703834908693 23.280498173739144 43 20.658984160929016 24.010811234732145 29.669015923234877 25.661188681103965 44 20.305974010572132 25.223345151346766 32.76596029568306 21.70472054239804 45 21.59722029612301 28.241577154858692 29.26761153389653 20.893591015121764 46 24.44157734614027 25.29459753877995 30.074341584901767 20.189483530178016 47 22.370858634306927 26.692100740355347 29.725061425296417 21.211979200041316 48 20.47659717725777 28.634660795597462 30.199439736260963 20.689302290883806 49 20.519252968929177 26.59885097156695 31.916478812217917 20.965417247285952 50 19.97821302837949 25.648085893079337 33.47762340291838 20.89607767562279 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 808.0 1 1267.5 2 1727.0 3 18981.0 4 36235.0 5 24814.0 6 13393.0 7 13492.0 8 13591.0 9 13858.5 10 14126.0 11 13733.0 12 13340.0 13 12593.0 14 11846.0 15 11014.5 16 10183.0 17 9305.0 18 8427.0 19 7807.5 20 7188.0 21 6728.5 22 6269.0 23 6155.5 24 6042.0 25 6273.0 26 6504.0 27 7542.5 28 8581.0 29 9982.0 30 11383.0 31 12209.0 32 13035.0 33 15945.0 34 18855.0 35 20110.0 36 21365.0 37 23926.0 38 26487.0 39 32123.5 40 37760.0 41 46680.0 42 55600.0 43 67707.5 44 79815.0 45 82942.5 46 86070.0 47 87973.0 48 89876.0 49 91842.5 50 93809.0 51 84241.0 52 74673.0 53 64935.0 54 55197.0 55 50301.5 56 45406.0 57 43653.5 58 41901.0 59 38910.5 60 35920.0 61 32254.0 62 28588.0 63 25710.0 64 22832.0 65 18886.0 66 14940.0 67 12812.5 68 10685.0 69 9617.5 70 8550.0 71 7658.5 72 6767.0 73 5327.5 74 3888.0 75 2958.0 76 2028.0 77 1420.0 78 812.0 79 674.5 80 537.0 81 420.5 82 304.0 83 208.5 84 113.0 85 82.0 86 51.0 87 41.0 88 31.0 89 25.5 90 20.0 91 14.5 92 9.0 93 8.5 94 8.0 95 6.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1045579.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.797406984291197 #Duplication Level Percentage of deduplicated Percentage of total 1 76.95836980531797 21.3924312632601 2 7.254173883073775 4.032944475252355 3 3.2151341465011023 2.6811717713814853 4 2.0319689416790125 2.2593387060516386 5 1.4415109920615925 2.0035133859332714 6 1.0983641905372035 1.8319005852800525 7 0.8895779004522251 1.7309571260171241 8 0.70174739069893 1.5605406255538044 9 0.5742610767879078 1.4366671980039694 >10 4.6423152400977274 27.730283172523524 >50 0.9366780824645948 18.395561537723008 >100 0.24481750159928017 9.25461921584612 >500 0.0072718069781957965 1.3895500904868174 >1k 0.0034627652277122835 2.0067428849036553 >5k 0.0 0.0 >10k+ 3.462765227712284E-4 2.293777961783102 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23830 2.279119989976845 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3160 0.30222489166289684 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2999 0.28682672471424925 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2810 0.26875061568757597 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCC 2681 0.2564129539709577 No Hit GAATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTT 2675 0.25583910923995223 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATG 1719 0.16440651543307583 No Hit GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1390 0.13294069601627423 No Hit GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1361 0.13016711314974763 No Hit GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1046 0.1000402647719589 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.041029898266893274 0.0 2 0.0 0.0 0.0 0.189464402020316 0.0 3 0.0 0.0 0.0 0.24522298171635046 0.0 4 0.0 0.0 0.0 0.4023607972233566 0.0 5 0.0 0.0 0.0 0.8587586399497312 0.0 6 0.0 0.0 0.0 1.0571176353006324 0.0 7 0.0 0.0 0.0 1.2140641692306369 0.0 8 0.0 0.0 0.0 1.500890893944886 0.0 9 9.564078850091671E-5 0.0 0.0 1.587063244384212 0.0 10 9.564078850091671E-5 0.0 0.0 2.0114214229627794 0.0 11 9.564078850091671E-5 0.0 0.0 2.203850689426624 0.0 12 9.564078850091671E-5 0.0 0.0 2.543758051758882 0.0 13 9.564078850091671E-5 0.0 0.0 2.631843217968226 0.0 14 9.564078850091671E-5 0.0 0.0 2.666369542617057 0.0 15 9.564078850091671E-5 0.0 0.0 2.73236168668269 0.0 16 9.564078850091671E-5 0.0 0.0 2.8316368251466413 0.0 17 9.564078850091671E-5 0.0 0.0 2.9518572962922938 0.0 18 9.564078850091671E-5 0.0 0.0 3.1285058326534867 0.0 19 1.9128157700183343E-4 0.0 0.0 3.222138164595884 0.0 20 2.8692236550275014E-4 0.0 0.0 3.3038153979756673 0.0 21 2.8692236550275014E-4 0.0 0.0 3.3972564483410626 0.0 22 2.8692236550275014E-4 0.0 0.0 3.5087736077331315 0.0 23 2.8692236550275014E-4 0.0 0.0 3.6360714972278516 0.0 24 3.8256315400366685E-4 0.0 0.0 3.7396504711743446 0.0 25 4.7820394250458356E-4 0.0 0.0 3.8117636257040357 0.0 26 4.7820394250458356E-4 0.0 0.0 3.8890413828127763 0.0 27 5.738447310055003E-4 0.0 0.0 3.9820998700241685 0.0 28 5.738447310055003E-4 0.0 0.0 4.088261145260186 0.0 29 5.738447310055003E-4 0.0 0.0 4.187153720570134 0.0 30 5.738447310055003E-4 0.0 0.0 4.299053443116207 0.0 31 5.738447310055003E-4 0.0 0.0 4.396128843444637 0.0 32 6.69485519506417E-4 0.0 0.0 4.488900408290526 0.0 33 7.651263080073337E-4 0.0 0.0 4.61658086093925 0.0 34 7.651263080073337E-4 0.0 0.0 4.735558001834391 0.0 35 7.651263080073337E-4 0.0 0.0 4.895469400207923 0.0 36 7.651263080073337E-4 0.0 0.0 5.0074647635424965 0.0 37 8.607670965082504E-4 0.0 0.0 5.120033971608075 0.0 38 8.607670965082504E-4 0.0 0.0 5.252018259739341 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGAT 25 4.442563E-5 44.0 32 CCGTCGA 25 4.442563E-5 44.0 35 GTAGACG 20 7.856156E-4 44.0 1 AATTCGC 80 0.0 44.0 13 ATGCGTA 20 7.856156E-4 44.0 43 TATAGCG 20 7.856156E-4 44.0 1 CCAACGA 25 4.442563E-5 44.0 31 ATACGAG 35 1.4459147E-7 44.0 1 GCGTAAG 40 8.310963E-9 44.0 1 CTTACGT 20 7.856156E-4 44.0 21 CGTTTTT 13445 0.0 43.32912 1 CGGTCTA 285 0.0 41.68421 31 AGGGTAC 815 0.0 41.300613 6 TCACGAC 295 0.0 41.01695 25 ATCGTAG 70 0.0 40.857143 1 ATAGCGG 135 0.0 40.74074 2 CCGCAAT 65 0.0 40.615383 33 CATATGC 1565 0.0 40.485626 33 CTCACGA 295 0.0 40.271187 24 GTTGATC 1615 0.0 40.185757 16 >>END_MODULE