##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546132_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 604187 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.363738379011796 30.0 28.0 31.0 23.0 33.0 2 27.970494234400938 30.0 27.0 31.0 16.0 33.0 3 27.6355399901024 30.0 26.0 31.0 16.0 33.0 4 32.17717527851477 35.0 32.0 35.0 28.0 35.0 5 33.328560528445664 35.0 33.0 35.0 28.0 37.0 6 33.507559745575456 35.0 33.0 35.0 29.0 37.0 7 33.60283819413526 35.0 33.0 35.0 30.0 37.0 8 32.900371904724864 35.0 32.0 35.0 27.0 37.0 9 33.98945690655376 35.0 32.0 39.0 27.0 39.0 10 34.5745721109524 37.0 33.0 39.0 28.0 39.0 11 34.584686529170604 37.0 33.0 39.0 27.0 39.0 12 34.172377095170866 35.0 32.0 39.0 27.0 39.0 13 33.66283120954274 37.0 32.0 39.0 25.0 39.0 14 35.75404634657813 37.0 34.0 40.0 29.0 41.0 15 35.21082545635706 37.0 33.0 40.0 27.0 41.0 16 35.494489288912206 37.0 33.0 40.0 29.0 41.0 17 34.682775365904924 36.0 32.0 39.0 26.0 41.0 18 34.22393232558794 36.0 32.0 39.0 26.0 40.0 19 33.09726624372917 35.0 31.0 37.0 24.0 40.0 20 32.90195088606673 35.0 31.0 38.0 24.0 40.0 21 33.83939906022473 35.0 32.0 38.0 25.0 40.0 22 34.079458843040314 35.0 33.0 38.0 27.0 40.0 23 34.14742290052583 35.0 33.0 39.0 26.0 40.0 24 34.33478376727735 35.0 33.0 39.0 25.0 40.0 25 34.56263706435259 35.0 33.0 39.0 27.0 40.0 26 33.97373826315363 35.0 33.0 39.0 25.0 40.0 27 33.86322777550659 35.0 33.0 39.0 24.0 40.0 28 33.7688447450872 35.0 33.0 39.0 24.0 40.0 29 33.51321527937542 35.0 33.0 39.0 23.0 40.0 30 33.54550826151506 35.0 33.0 39.0 22.0 40.0 31 33.39994405705518 35.0 33.0 39.0 23.0 40.0 32 32.74198716622502 35.0 32.0 39.0 18.0 40.0 33 32.115482458245545 35.0 31.0 39.0 15.0 40.0 34 31.229965225997912 35.0 30.0 38.0 10.0 40.0 35 30.77120163128303 35.0 28.0 38.0 8.0 40.0 36 31.213306476306176 35.0 29.0 38.0 10.0 40.0 37 30.824123988103022 35.0 27.0 39.0 8.0 40.0 38 31.030133054832362 35.0 27.0 39.0 10.0 40.0 39 30.33621544323198 35.0 26.0 38.0 8.0 40.0 40 29.841314030258843 35.0 24.0 38.0 8.0 40.0 41 29.164387846809017 34.0 23.0 37.0 8.0 40.0 42 29.362538419396643 34.0 23.0 38.0 8.0 40.0 43 29.763958840557642 35.0 24.0 38.0 8.0 40.0 44 29.83062528654208 35.0 24.0 38.0 8.0 40.0 45 29.80145881986868 35.0 24.0 38.0 8.0 40.0 46 29.273911884896563 34.0 23.0 38.0 7.0 40.0 47 29.191293424055797 34.0 23.0 37.0 8.0 40.0 48 29.27590133518265 34.0 24.0 37.0 7.0 40.0 49 29.35921660015856 34.0 24.0 38.0 7.0 40.0 50 29.259658019785267 34.0 23.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 0.0 11 3.0 12 3.0 13 11.0 14 38.0 15 150.0 16 459.0 17 1414.0 18 3255.0 19 4810.0 20 5605.0 21 7501.0 22 9882.0 23 12782.0 24 15842.0 25 19224.0 26 22925.0 27 24531.0 28 23820.0 29 24920.0 30 28377.0 31 34621.0 32 41118.0 33 49530.0 34 60415.0 35 67949.0 36 50524.0 37 48571.0 38 39569.0 39 6336.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.80970130108725 16.781559351657684 11.236090812943674 24.172648534311396 2 30.262650470797947 49.83705375984587 11.71458505396508 8.185710715391096 3 13.653719792051136 48.5415939104946 29.794748976724094 8.009937320730172 4 13.845713330475498 17.50749354090704 59.29720434236421 9.349588786253262 5 35.971148005501604 19.763252105722234 29.767108527657825 14.49849136111833 6 10.581823177261345 47.40634935872503 33.83356477382002 8.1782626901936 7 33.47423893595857 12.077552148589758 49.20099240797965 5.247216507472024 8 27.786761383478957 34.75711989830963 29.341743533045232 8.114375185166182 9 26.204138784846414 12.32929540026515 26.834738251567806 34.63182756332063 10 30.40995585803733 18.205787281090128 33.31336159169263 18.070895269179907 11 27.73876299887287 18.73194888337551 37.57793530810825 15.951352809643371 12 19.388533682452618 16.97007714498988 38.18155637244761 25.4598328001099 13 22.482608861163843 20.85943590312271 46.72444127397644 9.933513961737011 14 11.4118642076046 38.717979698338425 31.510442958885243 18.359713135171727 15 8.563904883752878 21.469842945975333 48.5702274295872 21.396024740684588 16 9.344623436121598 24.452363258395167 32.57683465549574 33.6261786499875 17 9.269646649133463 30.16549511988838 40.04273511346653 20.522123117511633 18 9.491763311689924 25.72051368202229 38.57746028961232 26.210262716675466 19 11.059655371598529 29.93444082709492 30.964419956073204 28.041483845233344 20 19.147714201066886 25.797807632405203 40.62103289213439 14.433445274393526 21 12.692759029902994 39.375061032428704 34.76225076011235 13.169929177555955 22 9.891639508959974 21.22968551127383 41.231439934987016 27.647235044779183 23 18.118893653785996 32.19384064867334 36.65106995019754 13.036195747343124 24 17.47770144011705 29.110192705238607 31.53709033792518 21.875015516719163 25 12.315392419896488 44.32088078690869 29.330323227742404 14.033403565452417 26 12.67273211770528 21.306813949985685 45.44023621825693 20.580217714052107 27 23.8212672566606 24.86614243603388 30.362619520115462 20.949970787190058 28 11.997610011469959 29.27454579459671 40.0525003020588 18.675343891874537 29 25.571553178072353 22.390418860385942 36.84024979021396 15.19777817132775 30 12.734136947666865 41.66756318821822 31.90469175933941 13.693608104775508 31 15.977503653670139 22.93478674648743 26.666909417117544 34.42080018272489 32 26.550554712365543 31.65245197265085 27.2779785066544 14.519014808329208 33 18.410690729856817 24.388310241696693 26.01264178143522 31.18835724701127 34 22.84822414252541 29.852347038251402 27.210780768205872 20.08864805101732 35 15.890279003023899 38.357329767108524 27.07853694303254 18.673854286835038 36 17.497231817301596 33.16307699437426 25.06922525641896 24.27046593190519 37 11.25164891002289 37.42814724580304 33.37807665507533 17.942127189098738 38 13.133020074910581 26.907563386832223 23.93712542639944 36.022291111857754 39 17.504845354170147 37.13221237795583 26.389677368099612 18.97326489977441 40 12.82599592510266 31.961462262511443 32.34131154758378 22.871230264802122 41 12.47295953074131 38.20803823981648 26.437510241034644 22.88149198840756 42 14.234996780797998 27.90874348504685 39.66867873688113 18.187580997274022 43 19.679337688497103 27.571265187764716 26.158623075306153 26.590774048432024 44 20.462869939273766 24.287513634023902 30.30071815514071 24.94889827156162 45 14.929318240875755 23.481802819325807 34.354595514302694 27.234283425495747 46 24.896596583508085 31.67479604824334 25.72117572870651 17.70743163954206 47 13.081214921870215 26.306756020900814 41.72135448131125 18.89067457591772 48 21.02395450415186 25.81535186953708 27.866869032269808 25.293824594041247 49 15.43793560602926 22.799398199564042 35.90875010551369 25.85391608889301 50 16.32425060453138 21.54746791970036 33.93055461305854 28.197726862709725 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 20417.0 1 14405.5 2 8394.0 3 25894.0 4 43394.0 5 26671.0 6 9948.0 7 9108.5 8 8269.0 9 8329.5 10 8390.0 11 8177.5 12 7965.0 13 7642.5 14 7320.0 15 6727.5 16 6135.0 17 5600.0 18 5065.0 19 4692.5 20 4320.0 21 4039.5 22 3759.0 23 3468.0 24 3177.0 25 3185.0 26 3193.0 27 3305.5 28 3418.0 29 3520.5 30 3623.0 31 4084.0 32 4545.0 33 5372.0 34 6199.0 35 7310.0 36 8421.0 37 9896.0 38 11371.0 39 13218.5 40 15066.0 41 18863.5 42 22661.0 43 71829.0 44 120997.0 45 91675.0 46 62353.0 47 54478.0 48 46603.0 49 41206.0 50 35809.0 51 32489.0 52 29169.0 53 26110.0 54 23051.0 55 20633.0 56 18215.0 57 16621.0 58 15027.0 59 13454.5 60 11882.0 61 10133.5 62 8385.0 63 7076.5 64 5768.0 65 4667.5 66 3567.0 67 3077.0 68 2587.0 69 2325.5 70 2064.0 71 1793.5 72 1523.0 73 1289.0 74 1055.0 75 789.0 76 523.0 77 400.0 78 277.0 79 205.0 80 133.0 81 99.0 82 65.0 83 52.0 84 39.0 85 29.5 86 20.0 87 13.0 88 6.0 89 6.0 90 6.0 91 5.0 92 4.0 93 4.5 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 604187.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.2282944423318 #Duplication Level Percentage of deduplicated Percentage of total 1 78.35258521796733 25.25170186722545 2 7.437385861224081 4.793885228335303 3 3.3496955852790373 3.238649268436554 4 2.244552343650521 2.893523752895797 5 1.6416656390620163 2.6454041795774734 6 1.254210092121849 2.425263128486823 7 1.0055894813183759 2.268590372442823 8 0.771780851611752 1.9898544424557705 9 0.6539281391212907 1.8967489750554363 >10 3.1142925986840946 15.899892842408361 >50 0.08895679900595276 1.983481862941749 >100 0.06941715529365847 4.179911690949745 >500 0.006684614954204149 1.211400486097714 >1k 0.006170413803880753 5.597631411683801 >5k 5.14201150323396E-4 1.1161124861652671 >10k+ 0.0025710057516169804 22.607948004841933 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCC 39496 6.537048960007414 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34351 5.6854914124269476 No Hit GAATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTT 29857 4.9416819627036 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 17783 2.9432940463796804 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATG 14937 2.4722478305557716 No Hit GAACTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC 6735 1.114721104558688 No Hit GAATGACTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTC 4883 0.8081934897639307 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGT 4771 0.7896561826057166 No Hit GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG 4433 0.7337132377889627 No Hit GAATGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCT 3881 0.6423507953663352 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCGACACAAATCGTATGCC 3673 0.6079243677867945 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2676 0.4429092317444765 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACACAAA 2035 0.33681625059791087 No Hit GAATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCCT 2009 0.3325129471504683 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACACAAATCGT 1873 0.31000335988692246 No Hit CGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT 1274 0.21086186892468722 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACACAAATCG 1160 0.191993538424362 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1110 0.18371795487158776 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGACACAAATCGTA 633 0.10476888777812168 No Hit GAATGATACTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG 629 0.10410684109389973 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG 621 0.10278274772545586 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCT 611 0.10112763101490102 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.106589516159732 0.0 2 1.6551167105548448E-4 0.0 0.0 1.1180313379797977 0.0 3 1.6551167105548448E-4 0.0 0.0 1.4897705511704158 0.0 4 1.6551167105548448E-4 0.0 0.0 2.9490869548666225 0.0 5 1.6551167105548448E-4 0.0 0.0 9.124658425288859 0.0 6 1.6551167105548448E-4 0.0 0.0 10.236069296426438 0.0 7 1.6551167105548448E-4 0.0 0.0 11.353604099393069 0.0 8 1.6551167105548448E-4 0.0 0.0 12.532047197308119 0.0 9 1.6551167105548448E-4 0.0 0.0 12.903124363814515 0.0 10 3.3102334211096895E-4 0.0 0.0 20.258794048862356 0.0 11 3.3102334211096895E-4 0.0 0.0 20.500772111945473 0.0 12 3.3102334211096895E-4 0.0 0.0 23.476671957523084 0.0 13 4.965350131664535E-4 0.0 0.0 23.68935445482938 0.0 14 6.620466842219379E-4 0.0 0.0 23.867776036227195 0.0 15 6.620466842219379E-4 0.0 0.0 24.285693005642294 0.0 16 9.93070026332907E-4 0.0 0.0 24.59453778383183 0.0 17 9.93070026332907E-4 0.0 0.0 24.71536130370233 0.0 18 9.93070026332907E-4 0.0 0.0 24.843963872112443 0.0 19 9.93070026332907E-4 0.0 0.0 25.346126282094783 0.0 20 9.93070026332907E-4 0.0 0.0 25.453874379951902 0.0 21 9.93070026332907E-4 0.0 0.0 25.50385890461066 0.0 22 0.0011585816973883913 0.0 0.0 25.644378313336766 0.0 23 0.0011585816973883913 0.0 0.0 25.70280393321935 0.0 24 0.0011585816973883913 0.0 0.0 25.89016314485416 0.0 25 0.0011585816973883913 0.0 0.0 25.95239553317102 0.0 26 0.0011585816973883913 0.0 0.0 26.089439196804964 0.0 27 0.0013240933684438758 0.0 0.0 26.327113956440638 0.0 28 0.0016551167105548449 0.0 0.0 26.411855932021048 0.0 29 0.0016551167105548449 0.0 0.0 26.520431588233443 0.0 30 0.0016551167105548449 0.0 0.0 26.598056561958465 0.0 31 0.0016551167105548449 0.0 0.0 26.669226580512326 0.0 32 0.0016551167105548449 0.0 0.0 26.794849938843438 0.0 33 0.0016551167105548449 0.0 0.0 26.849137766949635 0.0 34 0.0018206283816103292 0.0 0.0 26.94463800114865 0.0 35 0.0018206283816103292 0.0 0.0 27.03004202341328 0.0 36 0.0018206283816103292 0.0 0.0 27.075557732953538 0.0 37 0.0018206283816103292 0.0 0.0 27.130673119415015 0.0 38 0.0018206283816103292 0.0 0.0 27.1935675544161 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 25 4.440325E-5 44.0 25 GCCCCTC 30 2.525716E-6 44.0 35 CACGGGA 35 1.4445504E-7 44.0 4 CGACGGT 30 2.525716E-6 44.0 28 GCGAATC 20 7.853513E-4 44.0 33 GTAGGGC 90 0.0 44.0 4 TAGCCGT 30 2.525716E-6 44.0 44 TGGCCCG 20 7.853513E-4 44.0 33 ATACTCC 25 4.440325E-5 44.0 28 CCCGTCG 25 4.440325E-5 44.0 18 CGCTCAC 25 4.440325E-5 44.0 34 CGGGATA 25 4.440325E-5 44.0 6 TAGGGCA 80 0.0 44.0 5 TCGTATA 25 4.440325E-5 44.0 31 CGTAAGG 20 7.853513E-4 44.0 2 TACTACG 20 7.853513E-4 44.0 26 CTTTCAC 20 7.853513E-4 44.0 30 CGGTCTA 25 4.440325E-5 44.0 31 CCGCGTA 30 2.525716E-6 44.0 31 CGCGTAT 20 7.853513E-4 44.0 32 >>END_MODULE