##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546130_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 500162 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.747395843746627 16.0 16.0 28.0 16.0 31.0 2 21.542848117210024 16.0 16.0 30.0 10.0 31.0 3 22.325630495719388 25.0 16.0 30.0 10.0 31.0 4 26.66666600021593 28.0 19.0 33.0 19.0 35.0 5 30.74630819614445 33.0 28.0 35.0 19.0 35.0 6 31.098452101519108 33.0 30.0 35.0 19.0 35.0 7 29.91635310159508 32.0 28.0 35.0 17.0 35.0 8 29.988363770138474 32.0 28.0 35.0 17.0 35.0 9 23.67385966946709 25.0 17.0 31.0 16.0 35.0 10 25.741537741771666 27.0 17.0 34.0 17.0 37.0 11 27.73678528156877 31.0 17.0 35.0 17.0 39.0 12 27.876707946625295 31.0 17.0 37.0 15.0 39.0 13 28.066324510858482 31.0 17.0 37.0 11.0 39.0 14 30.912938208020602 32.0 27.0 38.0 17.0 40.0 15 28.240576053358712 30.0 17.0 37.0 16.0 40.0 16 29.421193533295213 31.0 25.0 36.0 17.0 40.0 17 28.061761989115528 31.0 17.0 36.0 16.0 40.0 18 28.294542568207902 31.0 17.0 36.0 16.0 39.0 19 27.249857046316993 30.0 18.0 36.0 10.0 37.0 20 27.07981613957078 31.0 18.0 35.0 10.0 38.0 21 29.46123056129814 33.0 25.0 36.0 15.0 38.0 22 30.792547214702438 33.0 27.0 36.0 17.0 38.0 23 30.651716843742626 34.0 27.0 36.0 16.0 39.0 24 31.945993498106613 35.0 30.0 37.0 19.0 39.0 25 31.661811573050333 34.0 30.0 37.0 20.0 39.0 26 25.24214354549126 32.0 15.0 36.0 0.0 38.0 27 27.732818566784363 33.0 18.0 36.0 10.0 39.0 28 29.013567604096274 33.0 23.0 36.0 13.0 39.0 29 29.333246028286837 33.0 25.0 36.0 13.0 38.0 30 29.709786029326498 33.0 26.0 36.0 11.0 38.0 31 29.40453493068246 33.0 25.0 36.0 12.0 38.0 32 28.865171684374264 33.0 23.0 36.0 9.0 39.0 33 28.7507487574026 33.0 24.0 36.0 9.0 38.0 34 27.062789656151406 32.0 19.0 35.0 8.0 38.0 35 26.21289302266066 31.0 16.0 35.0 7.0 38.0 36 27.83043293972753 33.0 21.0 35.0 8.0 38.0 37 27.229079778151878 33.0 18.0 36.0 7.0 38.0 38 27.549354009300988 32.0 21.0 36.0 8.0 38.0 39 26.41295420283828 31.0 18.0 35.0 7.0 38.0 40 25.906326350262514 30.0 17.0 35.0 7.0 38.0 41 24.173819682422895 27.0 14.0 34.0 7.0 37.0 42 24.679345891931014 28.0 14.0 34.0 7.0 37.0 43 25.379884917286798 29.0 16.0 34.0 7.0 37.0 44 25.732140786385212 30.0 18.0 35.0 7.0 37.0 45 25.604546127054835 30.0 18.0 35.0 7.0 37.0 46 24.164794606547478 27.0 14.0 33.0 7.0 36.0 47 24.41588525317797 28.0 15.0 33.0 7.0 36.0 48 24.625687277322147 28.0 15.0 33.0 7.0 36.0 49 24.613737149163672 28.0 15.0 34.0 7.0 36.0 50 25.663485030850005 29.0 17.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores warn #Quality Count 9 1.0 10 0.0 11 7.0 12 55.0 13 383.0 14 1607.0 15 4361.0 16 8065.0 17 11329.0 18 13105.0 19 13794.0 20 14356.0 21 15612.0 22 17595.0 23 21296.0 24 26450.0 25 32928.0 26 38574.0 27 41050.0 28 39533.0 29 35985.0 30 33229.0 31 31784.0 32 29159.0 33 26039.0 34 21616.0 35 15146.0 36 5945.0 37 1127.0 38 31.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 55.12294016738577 13.66977099419788 8.734370064099233 22.472918774317122 2 28.423790691815853 55.17352377829583 9.346371775544723 7.056313754343593 3 11.828767479336696 53.189366645206945 28.083301010472606 6.898564864983745 4 12.68648957737693 13.85091230441337 65.2722517904199 8.190346327789797 5 42.1785341549338 16.058796949788267 28.70529948296752 13.05736941231041 6 9.210415825272612 51.22960160907866 32.79057585342349 6.769406712225239 7 29.77975136055918 7.705903287334904 58.582419296148046 3.9319260559578697 8 27.039639156913157 37.429472850796344 28.1040942734554 7.426793718835098 9 20.092490033229236 6.001655463629784 17.910996837024804 55.99485766611618 10 33.09567700065179 14.626261091406384 33.15725704871622 19.12080485922561 11 32.659218413234115 15.483583319004643 36.79887716379893 15.058321103962315 12 17.37776960264874 13.768139122924172 38.654875820234246 30.19921545419284 13 25.287007009728846 18.79630999556144 46.897805111143995 9.018877883565725 14 10.97864291969402 38.376366057397405 31.260871477641246 19.384119545267335 15 5.429240925939995 15.516572630467728 36.78208260523591 42.27210383835637 16 5.993857990011237 16.80855402849477 27.318948660633957 49.87863932086004 17 7.03911932533859 26.046360979042788 40.33313206521087 26.58138763040775 18 6.975939795506256 23.42900900108365 36.5253657814868 33.069685421923296 19 8.648797789516196 27.448706619055425 31.00395471867115 32.89854087275722 20 13.168333459958973 23.831878471375276 42.94508579220332 20.05470227646243 21 12.37019205777328 36.79047988451742 34.01537901719843 16.823949040510875 22 7.8542552213082955 19.263758542232317 43.077842778939626 29.804143457519768 23 15.785485502697128 32.122992150543226 37.4370703891939 14.654451957565747 24 16.682594839272074 25.720066698389722 32.02962240234164 25.56771605999656 25 10.721526225502936 43.979350690376315 28.87004610506196 16.429076979058785 26 10.454212835041446 32.2543495907326 37.34330077055034 19.94813680367561 27 19.53567044277654 25.89600969285951 30.986760289666147 23.581559574697796 28 11.060416425078275 27.27376330069058 41.618715536166285 20.047104738064867 29 25.802440009436943 21.889707734693957 35.403929126962865 16.903923128906236 30 10.637153562245832 41.54034092953883 32.677212583123065 15.14529292509227 31 16.53864148016043 21.642987671994273 24.80856202590361 37.00980882194169 32 21.36967622490313 33.69588253405896 25.585910165106508 19.3485310759314 33 13.86330828811465 23.259663868906475 24.695198755603183 38.18182908737569 34 23.082121392668775 29.527832982113793 25.10186699509359 22.288178630123838 35 12.431372235395733 38.049471971081374 26.16032405500618 23.35883173851672 36 17.32638625085472 30.53070805059161 23.397819106609457 28.745086591944208 37 9.693059448738609 36.783082281340846 32.10479804543328 21.419060224487264 38 12.89522194808882 24.75218029358488 21.593803607631127 40.758794150695174 39 16.024208156557275 35.416125175443156 25.649889435822793 22.909777232176776 40 11.065814676044962 29.89071540820774 30.884993262183052 28.158476653564247 41 11.753791771466044 36.2494551765228 25.00469847769323 26.99205457431792 42 12.431972041058698 26.055957869650232 37.5026491416781 24.009420947612973 43 19.885157209064264 26.275486742295495 23.181089327058032 30.658266721582205 44 18.891679095972904 22.53429888716056 29.578016722581886 28.99600529428465 45 13.749545147372253 21.004994381820293 31.553376705947272 33.692083764860186 46 23.711917338782236 29.126962864032052 24.36810473406616 22.793015063119547 47 10.998236571350882 22.080246000295904 42.531419819978325 24.390097608374887 48 19.829175347187512 24.53185168005566 26.05395851744035 29.58501445531648 49 12.817847017566308 20.27023244468792 35.66384491424778 31.248075623497982 50 15.76749133280817 19.437902119713215 32.37631007553553 32.418296471943094 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 9513.0 1 8345.0 2 7177.0 3 16414.0 4 25651.0 5 18688.5 6 11726.0 7 9818.5 8 7911.0 9 8091.0 10 8271.0 11 7837.0 12 7403.0 13 7186.5 14 6970.0 15 6624.0 16 6278.0 17 5918.0 18 5558.0 19 5251.0 20 4944.0 21 4533.5 22 4123.0 23 3891.5 24 3660.0 25 3489.5 26 3319.0 27 3193.0 28 3067.0 29 3071.0 30 3075.0 31 3170.0 32 3265.0 33 3617.5 34 3970.0 35 4157.0 36 4344.0 37 4912.0 38 5480.0 39 6585.0 40 7690.0 41 12057.5 42 16425.0 43 30774.5 44 45124.0 45 53157.0 46 61190.0 47 56130.5 48 51071.0 49 47068.5 50 43066.0 51 37573.5 52 32081.0 53 26459.5 54 20838.0 55 18526.5 56 16215.0 57 15209.0 58 14203.0 59 13068.5 60 11934.0 61 10916.0 62 9898.0 63 9181.5 64 8465.0 65 7523.0 66 6581.0 67 5781.5 68 4982.0 69 4281.5 70 3581.0 71 3202.5 72 2824.0 73 2539.0 74 2254.0 75 1966.0 76 1678.0 77 1553.5 78 1429.0 79 1313.0 80 1197.0 81 1011.0 82 825.0 83 637.0 84 449.0 85 361.5 86 274.0 87 200.0 88 126.0 89 79.5 90 33.0 91 26.0 92 19.0 93 11.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 500162.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.65110052855254 #Duplication Level Percentage of deduplicated Percentage of total 1 86.98304952184733 40.57854987523764 2 6.190810344177183 5.7761623143882534 3 2.2639728798612837 3.1685047923697605 4 1.2446708431592952 2.3226105851673013 5 0.7568001109621356 1.7652779028257153 6 0.5157081440168702 1.4435011481954558 7 0.36794784081943416 1.2015620197931889 8 0.2827515737269603 1.055253767243429 9 0.21264486523090484 0.8928105286290705 >10 1.0274623908373697 8.337810417743901 >50 0.07406300958442288 2.387510276069009 >100 0.058691441557460575 5.325884168214285 >500 0.008850296742791674 2.9481525362178465 >1k 0.009316101834517553 8.64410405677082 >5k 0.0018632203669035105 6.184666420969715 >10k+ 0.001397415275177633 7.967639190164631 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15864 3.171772345759974 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCC 10660 2.1313094557363415 No Hit GAATGATACCTGTCCCTTATACACATCTGACGCGACACAAATCGTATGCC 10142 2.0277430112643504 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCGACACAAATCGTATG 9014 1.8022160819894353 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8149 1.6292721158344694 No Hit GAATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTT 5687 1.1370316017610294 No Hit GAATCTTTCTCTTACCCACATCTGACGCGACACAAATCGTATGCCGTCTT 5611 1.121836524965911 No Hit GAATGATACCTGTCTCTTATACACAACTGACGCGACACAAATCGTATGCC 3589 0.7175675081273667 No Hit GAACTGTCCCTTATCCACATCTGACGCGACACAAATCGTATGCCGTCTTC 3455 0.6907761885149212 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATG 3373 0.6743815003938723 No Hit GAATGATACCTGGCCCTTATACACATCTGACGCGACACAAATCGTATGCC 3149 0.6295960108924709 No Hit GAATCTGTCTCTTACCCACATCTGACGCGACACAAATCGTATGCCGTCTT 2303 0.4604508139362846 No Hit GAATGACTCTCTCTCCTACACATCTGACGCGACACAAATCGTATGCCGTC 2129 0.42566208548430307 No Hit GAATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCCT 1918 0.3834757538557507 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCGACACCAATCGTATG 1839 0.36768087139766714 No Hit GCTGTCTCCTATACCCATCTGACGCGACACAAATCGTATGCCGTCTTCTG 1815 0.36288242609394555 No Hit GAACTGTCCCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC 1814 0.3626824908729571 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACACAAA 1795 0.3588837216741776 No Hit GAATGCTGCCTCTTCCACACATCTGACGCGACACAAATCGTATGCCGTCT 1795 0.3588837216741776 No Hit GAATGACTCTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTC 1600 0.31989635358143964 No Hit AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1595 0.31889667747649764 No Hit GAATGATCCGTCTCCCATACACATCTGACGCGACACAAATCGTATGCCGT 1544 0.30869998120608927 No Hit GAATCTTTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTT 1413 0.2825084672566089 No Hit GAATGATACGGCGACCGTCTCTTATACACATCTGACGCGACACAAATCGT 1311 0.26211507471579204 No Hit CGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1233 0.2465201274786969 No Hit GAATGCTGCCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCT 1076 0.2151302977835181 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACACCAATCGTATGCC 1033 0.20653308328101697 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 993 0.19853567444148096 No Hit GAATCTTTCTCTTACCCCCATCTGACGCGACACAAATCGTATGCCGTCTT 976 0.19513677568467816 No Hit AAAAAAAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 889 0.17774241145868738 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACACCAATCGTATG 850 0.16994493784013978 No Hit GCTGTCTCCTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG 780 0.1559494723709518 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACACAAATCG 777 0.1553496667079866 No Hit GAACTGTCCCTTATACACATCTGACGCGACACAAATCGTATGCCGTCCTC 773 0.154549925824033 No Hit GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG 769 0.15375018494007942 No Hit CGCTGTCTCTTATACCCATCTGACGCGACACAAATCGTATGCCGTCTTCT 762 0.1523506383931606 No Hit CGTTTTTTCTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 686 0.13715556159804224 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCGACACAAATCGTATGCC 674 0.13475633894618144 No Hit GAATGATACGGCGCCCTCTCTTATACACATCTGACGCGACACAAATCGTA 635 0.12695886532763384 No Hit GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCGACACAAA 623 0.12455964267577306 No Hit CGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT 603 0.12056093825600506 No Hit GAATGATCCGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGT 596 0.11916139170908624 No Hit AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 564 0.11276346463745747 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCGACACACATCGTATG 561 0.11216365897449226 No Hit GAATGACTCGCTCTCCTACACATCTGACGCGACACAAATCGTATGCCGTC 537 0.10736521367077066 No Hit GAATGATACCTGTCCCTCATACACATCTGACGCGACACAAATCGTATGCC 519 0.10376637969297949 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06577868770518353 0.0 2 0.0 0.0 0.0 0.4984385059240806 0.0 3 0.0 0.0 0.0 1.2865831470603524 0.0 4 0.0 0.0 0.0 1.5472986752292257 0.0 5 0.0 0.0 0.0 4.689880478724893 0.0 6 0.0 0.0 0.0 4.857226258692184 0.0 7 0.0 0.0 0.0 4.9735885573074325 0.0 8 0.0 0.0 0.0 5.144133300810537 0.0 9 0.0 0.0 0.0 5.43863788132645 0.0 10 0.0 0.0 0.0 9.635877975535927 0.0 11 0.0 0.0 0.0 9.818618767519323 0.0 12 0.0 0.0 0.0 11.468884081557576 0.0 13 0.0 0.0 0.0 11.574050007797474 0.0 14 0.0 0.0 0.0 11.637629408071785 0.0 15 0.0 0.0 0.0 11.795178362210644 0.0 16 0.0 0.0 0.0 12.115274651013072 0.0 17 0.0 0.0 0.0 12.2130429740764 0.0 18 0.0 0.0 0.0 12.326206309155834 0.0 19 0.0 0.0 0.0 13.038175631095525 0.0 20 0.0 0.0 0.0 13.155737541036704 0.0 21 0.0 0.0 0.0 13.199323419212176 0.0 22 0.0 0.0 0.0 13.329481248075624 0.0 23 0.0 0.0 0.0 13.383863628184468 0.0 24 0.0 0.0 0.0 13.54601109240606 0.0 25 0.0 0.0 0.0 13.594995221548219 0.0 26 0.0 0.0 0.0 13.71975479944498 0.0 27 0.0 0.0 0.0 13.965275250818735 0.0 28 0.0 0.0 0.0 14.051047460622758 0.0 29 0.0 0.0 0.0 14.174207556751613 0.0 30 0.0 0.0 0.0 14.231788900396271 0.0 31 0.0 0.0 0.0 14.288770438377966 0.0 32 0.0 0.0 0.0 14.404532931330248 0.0 33 0.0 0.0 0.0 14.45811557055514 0.0 34 0.0 0.0 0.0 14.531291861436895 0.0 35 0.0 0.0 0.0 14.596270808258124 0.0 36 0.0 0.0 0.0 14.629859925384176 0.0 37 0.0 0.0 0.0 14.672046257012727 0.0 38 0.0 0.0 0.0 14.714632459083257 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGGCC 20 7.85221E-4 44.000004 4 TGACGGG 40 8.296411E-9 44.000004 3 ACGGGAT 20 7.85221E-4 44.000004 5 GGGACCA 20 7.85221E-4 44.000004 7 TAGGGTG 20 7.85221E-4 44.000004 5 AACTGCC 20 7.85221E-4 44.000004 4 ATTGGGT 20 7.85221E-4 44.000004 4 GTGACGG 20 7.85221E-4 44.000004 2 TTACCCG 65 0.0 44.000004 28 CGATCAC 20 7.85221E-4 44.000004 12 AATACCG 20 7.85221E-4 44.000004 27 TACCCGG 50 2.7284841E-11 44.0 29 TCACCTA 25 4.4392225E-5 44.0 37 ATAGGGT 35 1.4438956E-7 44.0 4 CGCATGG 45 4.783942E-10 44.0 2 CGTTGAA 60 0.0 44.0 19 TGAACGA 35 1.4438956E-7 44.0 22 CGTCTCA 75 0.0 44.0 20 GATCAGT 25 4.4392225E-5 44.0 25 ATAGAGG 25 4.4392225E-5 44.0 2 >>END_MODULE