##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546129_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 872080 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.88392234657371 31.0 28.0 31.0 23.0 33.0 2 28.926400100908175 31.0 28.0 31.0 23.0 33.0 3 28.353798963397853 31.0 28.0 31.0 16.0 34.0 4 31.90608889092744 35.0 32.0 35.0 25.0 37.0 5 33.638756765434366 35.0 33.0 35.0 30.0 37.0 6 33.66974589487203 35.0 33.0 37.0 28.0 37.0 7 33.745651775066506 35.0 33.0 37.0 29.0 37.0 8 34.0497351160444 35.0 35.0 37.0 31.0 37.0 9 35.7601515915971 38.0 35.0 39.0 30.0 39.0 10 35.83001559489955 37.0 35.0 39.0 30.0 39.0 11 35.954163608843224 37.0 35.0 39.0 30.0 39.0 12 35.30304903219888 37.0 34.0 39.0 29.0 39.0 13 35.60743624438125 37.0 35.0 39.0 30.0 39.0 14 36.82205302265847 38.0 35.0 40.0 31.0 41.0 15 36.84784308779011 39.0 35.0 41.0 31.0 41.0 16 36.63198674433538 38.0 35.0 41.0 31.0 41.0 17 36.169328501972295 38.0 34.0 40.0 29.0 41.0 18 35.56080634804147 38.0 34.0 39.0 28.0 40.0 19 34.77938835886616 37.0 33.0 39.0 27.0 40.0 20 34.769137005779285 35.0 34.0 39.0 29.0 40.0 21 35.21284285845335 35.0 34.0 39.0 30.0 40.0 22 35.502031923676725 36.0 34.0 39.0 30.0 40.0 23 35.654558068067146 36.0 35.0 39.0 31.0 41.0 24 35.44968580864141 36.0 34.0 40.0 30.0 41.0 25 35.212635308687275 35.0 34.0 39.0 30.0 41.0 26 35.05904045500413 35.0 34.0 39.0 29.0 41.0 27 35.337483946426936 36.0 34.0 40.0 30.0 41.0 28 35.22710875149069 36.0 34.0 40.0 30.0 41.0 29 35.19463122649298 36.0 34.0 40.0 29.0 41.0 30 34.69449018438675 36.0 34.0 40.0 25.0 41.0 31 34.03436152646546 35.0 33.0 39.0 24.0 40.0 32 33.63365631593432 35.0 33.0 39.0 21.0 40.0 33 32.96699385377488 35.0 33.0 40.0 16.0 41.0 34 32.24475621502614 35.0 31.0 40.0 12.0 41.0 35 31.811480598110265 35.0 31.0 40.0 10.0 41.0 36 31.4551543436382 35.0 30.0 40.0 8.0 40.0 37 31.307854783964775 35.0 29.0 40.0 8.0 40.0 38 31.103615493991377 35.0 28.0 40.0 8.0 40.0 39 30.80969291808091 35.0 27.0 39.0 8.0 40.0 40 30.49273117145216 35.0 25.0 39.0 8.0 40.0 41 29.99431015503165 35.0 24.0 39.0 7.0 40.0 42 30.28318388221264 35.0 25.0 39.0 7.0 40.0 43 30.214558297403908 35.0 25.0 39.0 7.0 40.0 44 30.1482536005871 35.0 24.0 39.0 7.0 40.0 45 30.111646867259886 35.0 24.0 39.0 7.0 40.0 46 29.792013347399322 35.0 23.0 38.0 7.0 40.0 47 29.742674983946426 35.0 23.0 38.0 7.0 40.0 48 29.711209980735713 35.0 23.0 38.0 7.0 40.0 49 29.580199064306026 35.0 24.0 38.0 7.0 40.0 50 29.68220461425557 35.0 23.0 39.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 3.0 11 6.0 12 13.0 13 12.0 14 48.0 15 116.0 16 336.0 17 871.0 18 1915.0 19 3636.0 20 5003.0 21 6752.0 22 9189.0 23 12785.0 24 18483.0 25 27318.0 26 37232.0 27 39868.0 28 35567.0 29 31927.0 30 32614.0 31 36662.0 32 44325.0 33 57696.0 34 78239.0 35 84888.0 36 80588.0 37 101026.0 38 103835.0 39 21124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.14140904504174 17.741835611411798 18.09352352995138 33.02323181359508 2 45.939134024401426 24.76859921108155 19.110632052105313 10.181634712411705 3 22.34600036693881 23.93553343729933 43.21484267498394 10.50362352077791 4 19.772727272727273 19.518278139620218 48.487180075222454 12.221814512430052 5 20.57999266122374 22.89709659664251 42.721195303183194 13.801715438950554 6 14.50681130171544 34.316691129254195 42.59895881111825 8.577538757912118 7 54.065911384276674 7.024470232088799 35.21465920557747 3.694959178057059 8 52.45929272543803 11.167553435464637 31.58689569764242 4.786258141454913 9 49.79153288689111 7.36170993486836 31.289216585634342 11.557540592606182 10 27.774516099440415 23.66996147142464 36.945807724062014 11.60971470507293 11 23.482134666544354 19.92305751765893 41.98250160535731 14.61230621043941 12 19.40223374002385 18.290179800018347 45.98798275387579 16.319603706082013 13 17.513760205485735 22.151866801210897 47.08283643702413 13.25153655627924 14 13.733029079900927 28.79632602513531 42.928171727364465 14.542473167599304 15 12.759609210164205 21.90521511787909 50.12086047151637 15.214315200440327 16 14.242500688010274 20.610035776534264 46.29449133107054 18.85297220438492 17 13.801715438950554 20.818961563159345 44.312907072745624 21.066415925144483 18 14.878795523346483 22.59574809650491 44.704614255572885 17.820842124575726 19 17.169525731584258 23.421819099165216 41.04520227502064 18.363452894229887 20 18.81799834877534 22.512269516558113 43.49623887716723 15.173493257499313 21 18.028850564168426 24.478488212090635 43.52800201816347 13.96465920557747 22 16.187735070177048 19.159366113200623 43.67064948169892 20.9822493349234 23 15.840404550041281 25.289766993853775 43.26220071553068 15.607627740574259 24 16.583570314650032 23.59806439776167 43.99883038253371 15.819534905054583 25 16.65179800018347 25.83375378405651 41.93640491698009 15.578043298779928 26 14.250412806164572 21.927116778277224 43.943674892211725 19.878795523346483 27 17.237753417117695 22.172965782955693 43.471585175671954 17.117695624254655 28 13.874988533162094 22.12537840565086 47.09636730575177 16.90326575543528 29 16.114920649481697 21.558572608017613 45.76334739932116 16.563159343179525 30 16.859462434639024 23.20062379598202 44.412095220621964 15.527818548756994 31 19.777199339510137 21.021924594073937 38.98140078891845 20.21947527749748 32 19.99529859645904 23.476286579212914 38.55208237776351 17.976332446564534 33 18.23640033024493 21.80361893404275 36.93560223832676 23.024378497385563 34 16.788253371250345 24.924777543344646 38.480299972479585 19.80666911292542 35 20.46303091459499 23.68830841207229 35.81013209797266 20.03852857536006 36 20.286785615998532 26.2708696449867 34.4855976515916 18.956747087423174 37 17.507453444638106 26.093362994220715 35.398128612053945 21.00105494908724 38 18.2744702320888 27.9392945601321 31.486904871112742 22.29933033666636 39 18.730850380699017 26.305499495459134 32.39289973396936 22.570750389872487 40 20.002637372718098 23.5472663058435 36.19622053022658 20.253875791211815 41 17.55676084762866 27.22708925786625 34.04550041280616 21.170649481698927 42 19.84565636180167 25.059054215209613 34.368635904962844 20.72665351802587 43 19.721241170534814 25.126823227226858 32.34714705072929 22.804788551509038 44 19.04790844876617 24.4517704797725 34.47424548206586 22.026075589395468 45 19.134368406568207 25.0909320245849 32.66856251720026 23.106137051646638 46 22.07274561966792 25.6082010824695 32.126066415925145 20.192986881937436 47 18.27080084395927 25.111801669571598 36.421773231813596 20.195624254655538 48 18.586138886340702 27.012774057425926 32.64585817814879 21.75522887808458 49 18.16152187872672 24.734772039262452 36.08912026419595 21.01458581781488 50 17.919342262177782 24.120952206219613 36.71291624621594 21.24678928538666 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 11018.0 1 8401.5 2 5785.0 3 33084.0 4 60383.0 5 40151.0 6 19919.0 7 19159.0 8 18399.0 9 18734.0 10 19069.0 11 19087.5 12 19106.0 13 18384.5 14 17663.0 15 16692.5 16 15722.0 17 14334.5 18 12947.0 19 11955.5 20 10964.0 21 10081.5 22 9199.0 23 8626.5 24 8054.0 25 7685.5 26 7317.0 27 7830.5 28 8344.0 29 9281.0 30 10218.0 31 11922.5 32 13627.0 33 14260.5 34 14894.0 35 16732.5 36 18571.0 37 20650.5 38 22730.0 39 25437.0 40 28144.0 41 32762.0 42 37380.0 43 41457.5 44 45535.0 45 46553.0 46 47571.0 47 68171.5 48 88772.0 49 79705.0 50 70638.0 51 63111.5 52 55585.0 53 46761.5 54 37938.0 55 34376.5 56 30815.0 57 28677.5 58 26540.0 59 24160.0 60 21780.0 61 19138.0 62 16496.0 63 14822.5 64 13149.0 65 10810.5 66 8472.0 67 7395.0 68 6318.0 69 5602.5 70 4887.0 71 4209.5 72 3532.0 73 2850.5 74 2169.0 75 1690.5 76 1212.0 77 932.0 78 652.0 79 474.5 80 297.0 81 206.5 82 116.0 83 94.5 84 73.0 85 54.5 86 36.0 87 27.0 88 18.0 89 14.5 90 11.0 91 9.0 92 7.0 93 5.0 94 3.0 95 3.0 96 3.0 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 872080.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.448797719280186 #Duplication Level Percentage of deduplicated Percentage of total 1 77.9784255178391 27.64241432649835 2 7.362748631975172 5.220011738255896 3 3.283531524077863 3.491917344057479 4 2.0359954005243175 2.886943564422855 5 1.4694616887245513 2.6045325079914248 6 1.1622205982016767 2.4719593734499234 7 0.8863290347982173 2.1993509067100803 8 0.7549916729030607 2.141083767398524 9 0.6028450152252978 1.923311790071817 >10 4.218511691096122 28.320654996524254 >50 0.1841917162887263 4.15611382368748 >100 0.050352212800027225 3.4678221731805485 >500 0.004872794787098369 1.1856510956718753 >1k 0.0038982358296786946 2.4378626355257964 >5k 6.497059716131159E-4 1.9520174555879912 >10k+ 9.745589574196736E-4 7.898352500965674 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43200 4.953673974864691 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT 13990 1.604210622878635 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC 11398 1.3069901843867535 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8820 1.0113751032015412 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATG 8131 0.9323685900376112 No Hit GAACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC 3818 0.43780387120447667 No Hit GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 2610 0.2992844693147418 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTC 2247 0.25765984772039263 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGT 2198 0.2520410971470507 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCCT 1520 0.17429593615264655 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1482 0.16993853774883036 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1462 0.1676451701678745 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1433 0.1643197871754885 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1285 0.147348867076415 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1089 0.12487386478304743 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCCAGA 1017 0.11661774149160627 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT 1009 0.11570039445922392 No Hit GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT 947 0.10859095495826072 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGT 942 0.10801761306302174 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1466837904779378E-4 0.0 0.0 0.07419044124392257 0.0 2 1.1466837904779378E-4 0.0 0.0 0.5686404916980093 0.0 3 1.1466837904779378E-4 0.0 0.0 0.7423630859554169 0.0 4 1.1466837904779378E-4 0.0 0.0 1.3784285845335291 0.0 5 1.1466837904779378E-4 0.0 0.0 3.5560957710301806 0.0 6 1.1466837904779378E-4 0.0 0.0 3.9684432620860473 0.0 7 1.1466837904779378E-4 0.0 0.0 4.428492798825796 0.0 8 1.1466837904779378E-4 0.0 0.0 4.953100632969452 0.0 9 2.2933675809558757E-4 0.0 0.0 5.113980368773507 0.0 10 2.2933675809558757E-4 0.0 0.0 6.684707824970186 0.0 11 2.2933675809558757E-4 0.0 0.0 6.863475827905697 0.0 12 2.2933675809558757E-4 0.0 0.0 8.051325566461793 0.0 13 4.5867351619117514E-4 0.0 0.0 8.176543436381984 0.0 14 4.5867351619117514E-4 0.0 0.0 8.265182093385928 0.0 15 4.5867351619117514E-4 0.0 0.0 8.442459407393818 0.0 16 4.5867351619117514E-4 0.0 0.0 8.575704063847354 0.0 17 4.5867351619117514E-4 0.0 0.0 8.659870654068435 0.0 18 4.5867351619117514E-4 0.0 0.0 8.769493624438125 0.0 19 4.5867351619117514E-4 0.0 0.0 8.97188331345748 0.0 20 5.733418952389689E-4 0.0 0.0 9.044124392257592 0.0 21 5.733418952389689E-4 0.0 0.0 9.101802586918632 0.0 22 5.733418952389689E-4 0.0 0.0 9.21199889918356 0.0 23 5.733418952389689E-4 0.0 0.0 9.285960003669388 0.0 24 5.733418952389689E-4 0.0 0.0 9.37780937528667 0.0 25 5.733418952389689E-4 0.0 0.0 9.43766626914962 0.0 26 5.733418952389689E-4 0.0 0.0 9.52343821667737 0.0 27 5.733418952389689E-4 0.0 0.0 9.632373176772774 0.0 28 6.880102742867626E-4 0.0 0.0 9.700830199064306 0.0 29 6.880102742867626E-4 0.0 0.0 9.77031923676727 0.0 30 8.026786533345565E-4 0.0 0.0 9.848408402898817 0.0 31 8.026786533345565E-4 0.0 0.0 9.919273461150354 0.0 32 9.173470323823503E-4 0.0 0.0 9.992546555361894 0.0 33 9.173470323823503E-4 0.0 0.0 10.068801027428677 0.0 34 9.173470323823503E-4 0.0 0.0 10.151476928722136 0.0 35 9.173470323823503E-4 0.0 0.0 10.256054490413723 0.0 36 9.173470323823503E-4 0.0 0.0 10.326116870011926 0.0 37 9.173470323823503E-4 0.0 0.0 10.399733969360609 0.0 38 0.001032015411430144 0.0 0.0 10.48745527933217 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 20 7.8554347E-4 44.000004 1 TCGAGTA 20 7.8554347E-4 44.000004 26 GCGTAAG 20 7.8554347E-4 44.000004 1 CATCGTT 30 2.527011E-6 44.0 36 CGTTTTT 20650 0.0 43.414043 1 CGGTCTA 125 0.0 42.24 31 TACGGCT 1025 0.0 41.42439 7 CGGCTGT 1030 0.0 41.223297 9 CGATGAA 605 0.0 40.727272 19 TCACGAC 130 0.0 40.615383 25 CATATGC 510 0.0 40.117645 33 ACGGCTG 1060 0.0 40.056602 8 GTTTTTT 22855 0.0 39.572086 2 GATACCT 1475 0.0 39.525425 5 ACGGGAT 140 0.0 39.28571 5 TGATACC 1500 0.0 39.16 4 GAATCTG 1955 0.0 38.936058 1 CGAAAGG 85 0.0 38.823532 2 TATGGGA 425 0.0 38.823532 4 AGGGCGC 250 0.0 38.72 6 >>END_MODULE