##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546126_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 713660 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.192604321385534 28.0 16.0 30.0 16.0 33.0 2 25.530918084241797 30.0 16.0 31.0 16.0 33.0 3 25.91022896056946 30.0 16.0 31.0 16.0 33.0 4 26.88219880615419 28.0 19.0 35.0 10.0 35.0 5 31.323172098758512 33.0 32.0 35.0 25.0 35.0 6 30.72731552840288 35.0 29.0 35.0 17.0 35.0 7 30.300517052938375 32.0 28.0 35.0 17.0 35.0 8 31.97169520499958 35.0 32.0 35.0 27.0 35.0 9 26.629202981812067 30.0 17.0 34.0 10.0 37.0 10 30.417183252529217 34.0 27.0 37.0 17.0 39.0 11 32.6086231538828 35.0 31.0 37.0 17.0 39.0 12 32.465417705910376 35.0 30.0 39.0 17.0 39.0 13 33.01356248073312 35.0 31.0 39.0 21.0 39.0 14 33.779019421012805 36.0 31.0 39.0 25.0 41.0 15 31.779542078861084 34.0 27.0 39.0 17.0 40.0 16 30.856398004652075 34.0 27.0 38.0 17.0 40.0 17 30.990702855701596 33.0 26.0 38.0 17.0 40.0 18 31.648900036431915 34.0 27.0 38.0 17.0 39.0 19 31.038242300255025 35.0 27.0 37.0 17.0 39.0 20 31.153853375556988 34.0 28.0 36.0 18.0 39.0 21 32.38102177507496 35.0 31.0 37.0 23.0 39.0 22 32.909549365243954 35.0 31.0 37.0 25.0 39.0 23 33.58295546899084 35.0 32.0 38.0 26.0 39.0 24 33.55555866939439 35.0 33.0 38.0 25.0 40.0 25 32.6661869797943 35.0 31.0 37.0 22.0 39.0 26 25.960831488383825 33.0 18.0 36.0 0.0 39.0 27 29.295681416921223 33.0 22.0 37.0 12.0 39.0 28 30.778443516520472 33.0 27.0 36.0 17.0 39.0 29 31.72946361012247 34.0 30.0 37.0 21.0 39.0 30 31.560559650253623 34.0 30.0 37.0 19.0 39.0 31 30.471538267522348 33.0 27.0 36.0 16.0 38.0 32 30.51420844659922 34.0 27.0 37.0 15.0 39.0 33 29.994336238544964 34.0 26.0 37.0 12.0 39.0 34 29.072072135190428 33.0 24.0 37.0 8.0 39.0 35 28.111882408990276 33.0 21.0 36.0 7.0 39.0 36 28.125964745116722 33.0 21.0 36.0 7.0 39.0 37 28.179882577137572 33.0 21.0 37.0 7.0 39.0 38 27.882539304430683 33.0 21.0 36.0 7.0 38.0 39 27.617331782641592 33.0 20.0 36.0 7.0 39.0 40 27.28082560322843 32.0 18.0 36.0 7.0 38.0 41 26.251849620267354 31.0 17.0 35.0 7.0 38.0 42 26.659818400919207 31.0 18.0 35.0 7.0 38.0 43 26.511998710870724 31.0 18.0 35.0 7.0 38.0 44 26.471228596250317 31.0 18.0 35.0 7.0 38.0 45 26.119659221478013 31.0 18.0 35.0 7.0 38.0 46 25.4387705630132 30.0 15.0 35.0 7.0 38.0 47 25.44709525544377 30.0 17.0 34.0 7.0 37.0 48 25.445331110052408 30.0 17.0 34.0 7.0 37.0 49 25.191147044811256 29.0 15.0 34.0 7.0 37.0 50 26.59464871227195 31.0 18.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 9.0 11 17.0 12 29.0 13 119.0 14 432.0 15 1146.0 16 2452.0 17 4347.0 18 6450.0 19 8922.0 20 11928.0 21 15472.0 22 20352.0 23 26345.0 24 33523.0 25 41132.0 26 46553.0 27 47093.0 28 46637.0 29 47775.0 30 51915.0 31 56783.0 32 61378.0 33 62091.0 34 56140.0 35 41946.0 36 18984.0 37 3596.0 38 89.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.488804192472607 17.314127175405655 17.210856710478378 33.98621192164336 2 46.35989126474792 23.672757335425835 19.410223355659557 10.55712804416669 3 23.073172098758512 21.609169632598153 44.27864809573186 11.039010172911471 4 20.525039934983045 18.532354342403945 48.764257489560855 12.178348233052153 5 21.031443544545024 22.165036572037106 43.66449009332175 13.139029790096124 6 14.262113611523693 34.20802623097834 43.361264467673685 8.168595689824286 7 55.02942577698063 4.761230838214275 37.51268110865118 2.6966622761539107 8 54.88187652383488 10.218451363394333 31.130230081551442 3.7694420312193477 9 44.58887985875627 4.397332062887089 27.09273323431326 23.921054844043383 10 28.89639324047866 22.953927640613177 37.304458705826306 10.84522041308186 11 24.87346915898327 18.699240534708405 42.54715130454278 13.880139001765546 12 18.8919093125578 17.315528402880922 46.97362889891545 16.818933385645828 13 17.7148782333324 21.756018272006276 47.853459630636436 12.675643864024885 14 13.440293697278815 28.620211305103272 43.949219516296274 13.990275481321637 15 11.084550065857691 19.301488103578734 46.96185858812319 22.652103242440376 16 12.233976963820306 17.027716279460808 45.06025278143654 25.67805397528235 17 12.871815710562453 19.57262562004316 45.30700893983129 22.2485497295631 18 14.002466160356471 21.64349970574223 45.20093601995348 19.15309811394782 19 16.682593952302216 22.38951321357509 42.08937028837261 18.838522545750077 20 18.018664349970575 21.31056805761847 45.02564246279741 15.645125129613541 21 18.029313678782614 23.39139085839195 44.12633466917019 14.452960793655242 22 15.613037020429896 18.273827873216938 45.2083625255724 20.904772580780765 23 15.005464787153548 25.044839279208585 44.19303309699297 15.7566628366449 24 15.766471428971778 22.951825799400275 45.454277947482 15.827424824145952 25 16.344898130762548 24.465571840932657 43.249166269652214 15.940363758652579 26 11.458397556259284 34.031751814589576 36.85606591374044 17.6537847154107 27 15.872123980607011 22.27671440181599 44.89070425692907 16.960457360647926 28 13.228428103018244 21.44200319479864 48.799148053695035 16.530420648488075 29 15.556847798671637 20.832048874814337 46.59767956730095 17.01342375921307 30 15.910657736176892 22.443880839615503 45.698091528178686 15.94736989602892 31 20.310932376762043 20.012611047277414 39.44203121934815 20.23442535661239 32 19.237031639716392 23.348233052153684 38.724462629263236 18.690272678866688 33 17.186755597903762 21.168063223383683 37.508477426225376 24.13670375248718 34 16.834767256116358 23.839363282235237 38.468738615026766 20.85713084662164 35 19.43278311801138 23.039402516604547 35.882072695681416 21.64574166970266 36 19.876411736681334 24.698315724574726 34.97001373202926 20.45525880671468 37 17.23972199646891 24.98528711150968 34.95824342123701 22.816747470784406 38 17.95434800885576 27.738699100411964 30.92130706498893 23.38564582574335 39 17.67382226830704 25.154695513269626 32.57265364459266 24.598828573830676 40 19.201440461844577 22.408009416248635 36.1174789115265 22.273071210380294 41 17.145559510130877 25.54858055656755 34.060897346075166 23.24496258722641 42 19.491214303730068 24.010873525208083 32.88736933553793 23.61054283552392 43 18.91909312557801 24.40882212818429 31.89964408822128 24.77244065801642 44 18.513718016982878 23.547347476389316 34.264775943726704 23.674158562901102 45 19.034133901297537 24.75310371885772 31.371241207297594 24.84152117254715 46 21.330745733262336 23.99195695429196 31.63074853571729 23.046548776728415 47 17.634307653504468 23.665330829806912 35.71140318919374 22.988958327494885 48 17.441638875655073 26.597259199058378 32.37171762463918 23.589384300647367 49 17.585404814617604 23.866547095255445 35.266793711291086 23.28125437883586 50 17.603901017291147 23.563461592354905 36.41257741781801 22.42005997253594 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5634.0 1 5029.0 2 4424.0 3 19159.5 4 33895.0 5 25943.0 6 17991.0 7 16708.5 8 15426.0 9 16009.5 10 16593.0 11 17047.5 12 17502.0 13 17140.5 14 16779.0 15 16275.0 16 15771.0 17 14901.5 18 14032.0 19 13188.0 20 12344.0 21 11386.5 22 10429.0 23 9573.5 24 8718.0 25 8205.0 26 7692.0 27 7854.5 28 8017.0 29 8532.5 30 9048.0 31 10346.5 32 11645.0 33 11924.0 34 12203.0 35 13323.0 36 14443.0 37 15703.0 38 16963.0 39 18520.5 40 20078.0 41 23430.5 42 26783.0 43 29813.5 44 32844.0 45 35233.0 46 37622.0 47 43793.0 48 49964.0 49 54394.5 50 58825.0 51 53939.0 52 49053.0 53 44017.5 54 38982.0 55 34461.5 56 29941.0 57 27186.5 58 24432.0 59 22097.5 60 19763.0 61 17471.0 62 15179.0 63 13459.5 64 11740.0 65 10163.0 66 8586.0 67 7436.5 68 6287.0 69 5588.5 70 4890.0 71 4249.0 72 3608.0 73 3004.0 74 2400.0 75 1877.0 76 1354.0 77 1075.5 78 797.0 79 629.0 80 461.0 81 356.0 82 251.0 83 195.0 84 139.0 85 108.5 86 78.0 87 55.0 88 32.0 89 21.0 90 10.0 91 8.5 92 7.0 93 4.0 94 1.0 95 1.5 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 713660.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.54377790364496 #Duplication Level Percentage of deduplicated Percentage of total 1 84.42604010160001 44.360631003826946 2 6.64263634862513 6.980584179936761 3 2.683987517804735 4.230805320950621 4 1.4915282490927069 3.134821162293585 5 0.9100740455422437 2.390936426242167 6 0.6735119739185682 2.123331814381366 7 0.49471297853220547 1.8195862209032818 8 0.3784131511466696 1.5906605255735233 9 0.2918031720415243 1.379919695699606 >10 1.9076509589868018 17.631961603288566 >50 0.06036253989651961 2.135797323865194 >100 0.03061448572182035 3.260755100569225 >500 0.005776318060720052 2.2189584902741157 >1k 0.0025993431273240238 3.66320879474264 >5k 0.0 0.0 >10k+ 2.8881590303600263E-4 3.0780423374524615 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20283 2.842109688086764 No Hit GAATGATACGGCTGCCTCTTATACACATCTGACGCTGCCCAGATCGTATG 4680 0.6557744584255808 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4451 0.6236863492419359 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCC 2946 0.41280161421405154 No Hit GAATGATACCTGTCCCTTATACACATCTGACGCTGCCCAGATCGTATGCC 2692 0.3772104363422358 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT 2415 0.3383964352773029 No Hit GAATCTTTCTCTTACCCACATCTGACGCTGCCCAGATCGTATGCCGTCTT 2111 0.29579912002914555 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATG 1964 0.275201076142701 No Hit GAACTGTCCCTTATCCACATCTGACGCTGCCCAGATCGTATGCCGTCTTC 1802 0.252501191043354 No Hit CGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1078 0.15105232183392653 No Hit GAACTGTCCCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC 987 0.13830115180898467 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCCAGA 953 0.13353697839307233 No Hit GAATGACTCTCTCTCCTACACATCTGACGCTGCCCAGATCGTATGCCGTC 935 0.13101476893758932 No Hit GAATCTGTCTCTTACCCACATCTGACGCTGCCCAGATCGTATGCCGTCTT 918 0.12863268222963317 No Hit GCTGTCTCCTATACCCATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG 911 0.12765182299694533 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCCT 907 0.12709133200683798 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 900 0.12611047277415016 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 846 0.11854384440770115 No Hit GAATGATACGGCGACCGTCTCTTATACACATCTGACGCTGCCCAGATCGT 740 0.10369083316985679 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03797326457977188 0.0 2 0.0 0.0 0.0 0.252501191043354 0.0 3 0.0 0.0 0.0 0.531065213126699 0.0 4 0.0 0.0 0.0 0.6686657511980495 0.0 5 0.0 0.0 0.0 1.697446963540061 0.0 6 0.0 0.0 0.0 1.8332259058935627 0.0 7 0.0 0.0 0.0 1.9215032368354679 0.0 8 1.401227475268335E-4 0.0 0.0 2.0607852478771402 0.0 9 1.401227475268335E-4 0.0 0.0 2.1775074965669927 0.0 10 1.401227475268335E-4 0.0 0.0 3.0316957654905696 0.0 11 1.401227475268335E-4 0.0 0.0 3.1552840288092368 0.0 12 1.401227475268335E-4 0.0 0.0 3.8060140683238517 0.0 13 1.401227475268335E-4 0.0 0.0 3.8809797382507076 0.0 14 1.401227475268335E-4 0.0 0.0 3.918532634587899 0.0 15 1.401227475268335E-4 0.0 0.0 4.00078468738615 0.0 16 1.401227475268335E-4 0.0 0.0 4.116806322338369 0.0 17 1.401227475268335E-4 0.0 0.0 4.175237508057058 0.0 18 1.401227475268335E-4 0.0 0.0 4.243757531597679 0.0 19 1.401227475268335E-4 0.0 0.0 4.495698231650926 0.0 20 1.401227475268335E-4 0.0 0.0 4.555951013087465 0.0 21 1.401227475268335E-4 0.0 0.0 4.593083541182075 0.0 22 1.401227475268335E-4 0.0 0.0 4.6702911750693605 0.0 23 1.401227475268335E-4 0.0 0.0 4.721576100664182 0.0 24 1.401227475268335E-4 0.0 0.0 4.779446795392764 0.0 25 1.401227475268335E-4 0.0 0.0 4.823725583611243 0.0 26 1.401227475268335E-4 0.0 0.0 4.894767816607348 0.0 27 1.401227475268335E-4 0.0 0.0 4.981784042821512 0.0 28 1.401227475268335E-4 0.0 0.0 5.035451055124289 0.0 29 1.401227475268335E-4 0.0 0.0 5.093181627105344 0.0 30 1.401227475268335E-4 0.0 0.0 5.1528739175517755 0.0 31 1.401227475268335E-4 0.0 0.0 5.206120561611972 0.0 32 1.401227475268335E-4 0.0 0.0 5.263991256340554 0.0 33 1.401227475268335E-4 0.0 0.0 5.326626124485049 0.0 34 1.401227475268335E-4 0.0 0.0 5.390522097357285 0.0 35 1.401227475268335E-4 0.0 0.0 5.461564330353389 0.0 36 1.401227475268335E-4 0.0 0.0 5.517333183869069 0.0 37 1.401227475268335E-4 0.0 0.0 5.57352240562733 0.0 38 1.401227475268335E-4 0.0 0.0 5.63853936047978 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAG 25 4.4411376E-5 44.0 1 CGGGTAT 20 7.8544737E-4 44.0 6 CGAACGC 25 4.4411376E-5 44.0 24 ATAGACG 20 7.8544737E-4 44.0 1 TAACGTA 20 7.8544737E-4 44.0 24 CGGTCTA 75 0.0 44.0 31 ACGTAGT 20 7.8544737E-4 44.0 35 GCGTAGC 20 7.8544737E-4 44.0 39 CGACGGT 85 0.0 43.999996 28 CGTTTTT 17785 0.0 43.492832 1 TACGGCT 1110 0.0 42.414413 7 GCGGAAT 135 0.0 42.370373 8 CCTTATC 365 0.0 42.19178 9 ACGGCTG 1135 0.0 41.48018 8 TGATCCG 250 0.0 41.36 4 ACCCGTC 155 0.0 41.16129 17 TGTACGG 75 0.0 41.066666 2 CGACCGT 130 0.0 40.615387 12 GATACCT 1200 0.0 40.333332 5 CGCAAGA 290 0.0 40.206894 20 >>END_MODULE