SRR1546125_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546125_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1214791
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32808	2.7007114804110337	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	4483	0.3690346734541168	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3267	0.2689351501616327	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3083	0.25378851176869105	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1767	0.1454571197843909	No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1440	0.11853890916215218	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	1383	0.11384674400781698	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCC	1348	0.11096558996568134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAACG	20	7.856658E-4	44.000004	1
TCGGATC	20	7.856658E-4	44.000004	44
TACGCGG	40	8.312782E-9	44.000004	2
TCCGTAG	20	7.856658E-4	44.000004	1
ACGTAGC	20	7.856658E-4	44.000004	44
ATCGGTT	20	7.856658E-4	44.000004	39
TACGTAA	20	7.856658E-4	44.000004	27
CTATGCG	30	2.5278368E-6	44.0	1
CGTATAA	25	4.4429915E-5	44.0	27
GTCGACG	25	4.4429915E-5	44.0	1
CGCATCG	30	2.5278368E-6	44.0	21
TTATGCA	25	4.4429915E-5	44.0	43
GAATCCC	25	4.4429915E-5	44.0	9
GCATTAC	30	2.5278368E-6	44.0	44
CTACGAA	85	0.0	44.0	11
ACTACCG	30	2.5278368E-6	44.0	1
TCCGTTA	25	4.4429915E-5	44.0	24
ACATCGG	25	4.4429915E-5	44.0	42
TAGTGCG	25	4.4429915E-5	44.0	1
CGCAAGT	25	4.4429915E-5	44.0	20