##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546122_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1041613 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.193543091340064 28.0 25.0 31.0 16.0 33.0 2 26.363880827140214 30.0 25.0 31.0 16.0 33.0 3 26.652372810247183 30.0 25.0 31.0 16.0 33.0 4 27.41905006945958 32.0 19.0 35.0 10.0 35.0 5 31.409543659689348 33.0 32.0 35.0 19.0 37.0 6 30.080545269692294 33.0 28.0 35.0 17.0 36.0 7 30.246181643278263 32.0 28.0 35.0 18.0 35.0 8 32.54710530686541 35.0 32.0 35.0 28.0 35.0 9 27.44546391030066 31.0 23.0 34.0 10.0 37.0 10 32.00677122885371 35.0 31.0 37.0 18.0 39.0 11 33.964609696691575 35.0 32.0 39.0 27.0 39.0 12 33.476213334510994 35.0 32.0 39.0 25.0 39.0 13 33.238494527238046 35.0 31.0 39.0 22.0 39.0 14 33.103252359561566 35.0 31.0 39.0 21.0 40.0 15 32.09324000372499 34.0 28.0 38.0 18.0 40.0 16 30.848416830435102 34.0 27.0 38.0 17.0 40.0 17 30.6691631152837 32.0 26.0 38.0 17.0 40.0 18 31.79229713914861 34.0 29.0 38.0 18.0 39.0 19 31.472216648601737 34.0 29.0 37.0 18.0 39.0 20 31.500408501045975 34.0 29.0 36.0 18.0 39.0 21 32.51471707822387 34.0 31.0 36.0 23.0 39.0 22 32.76765458956445 34.0 31.0 37.0 25.0 39.0 23 34.0356946389878 35.0 33.0 38.0 28.0 39.0 24 33.66668618767239 35.0 33.0 38.0 26.0 40.0 25 32.63552490224296 35.0 31.0 37.0 23.0 39.0 26 26.040606252034106 33.0 18.0 35.0 0.0 38.0 27 29.298521619833853 33.0 23.0 36.0 11.0 39.0 28 30.851057926504375 33.0 27.0 36.0 18.0 39.0 29 32.09220027015792 34.0 30.0 37.0 23.0 39.0 30 31.909265725370172 34.0 30.0 37.0 21.0 39.0 31 30.77657152896517 33.0 29.0 36.0 18.0 38.0 32 30.818181032686805 34.0 29.0 36.0 18.0 39.0 33 30.2721874630981 33.0 28.0 36.0 15.0 38.0 34 29.972847881122835 34.0 27.0 37.0 10.0 39.0 35 28.88780477970225 33.0 24.0 36.0 8.0 38.0 36 28.573961730508355 33.0 23.0 36.0 8.0 38.0 37 28.708170884963994 33.0 23.0 36.0 8.0 39.0 38 28.451925043178225 33.0 23.0 36.0 8.0 38.0 39 28.526036061377884 33.0 23.0 36.0 7.0 39.0 40 28.372315821711133 33.0 23.0 36.0 7.0 38.0 41 27.78842045942207 32.0 22.0 35.0 7.0 38.0 42 27.951132522347553 33.0 22.0 36.0 7.0 38.0 43 27.592907346586497 32.0 22.0 35.0 7.0 38.0 44 27.235580777121637 32.0 21.0 35.0 7.0 38.0 45 26.522088337991175 31.0 20.0 34.0 7.0 37.0 46 26.05353619818493 30.0 18.0 34.0 7.0 37.0 47 26.155316801921636 30.0 18.0 34.0 7.0 37.0 48 26.270735868311935 31.0 19.0 34.0 7.0 37.0 49 26.138871154641887 31.0 18.0 34.0 7.0 37.0 50 27.811853346684423 33.0 21.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 6.0 11 12.0 12 34.0 13 123.0 14 346.0 15 855.0 16 1862.0 17 3281.0 18 5778.0 19 9221.0 20 13519.0 21 19074.0 22 25667.0 23 34111.0 24 43690.0 25 52783.0 26 59698.0 27 62210.0 28 64758.0 29 73333.0 30 85823.0 31 98544.0 32 105263.0 33 100888.0 34 83681.0 35 61833.0 36 29464.0 37 5614.0 38 139.0 39 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.18758214423207 20.757613432244028 24.397544961516417 30.65725946200748 2 45.16379883891618 16.60674357942921 26.045469862607323 12.183987719047286 3 27.203193508529562 13.67734465679672 46.244046493275334 12.875415341398389 4 25.347993928647206 21.737343907958138 40.1878624786749 12.726799684719756 5 16.59810313427348 26.230471393886212 42.952996938402265 14.218428533438043 6 16.56584547235874 33.43881076753074 40.62612505796299 9.369218702147535 7 70.68344961132398 3.5102288469901968 24.311140509959074 1.4951810317267544 8 72.63542217695056 2.3739143040649453 23.163209368546667 1.8274541504378305 9 61.98885766594695 2.9575283718617182 22.533512926585978 12.520101035605355 10 41.74208655229917 21.209988738619813 28.629538993848964 8.418385715232048 11 37.59006464013026 16.721085470323434 33.43429853506053 12.254551354485784 12 33.17326108641117 17.118545947487217 39.413294572936394 10.294898393165216 13 16.598391149112 33.66951065318885 39.07574118218571 10.65635701551344 14 11.587316978570735 37.39747871810356 39.95716259301679 11.058041710308915 15 9.94870455725879 20.142701751994263 55.64782697604581 14.260766714701143 16 10.986614030354843 12.989469217454083 56.7603322923197 19.26358445987137 17 11.363145429252516 14.474473724886305 41.12141457527892 33.04096627058226 18 15.93883716889094 21.25184689515204 45.98051291602543 16.828803019931588 19 22.705745800023617 22.32527819833278 38.568547051544094 16.40042895009951 20 24.623252589973436 18.92324692568161 37.69547807103022 18.758022413314734 21 20.318198793601848 22.12126768771127 41.087524829279204 16.473008689407678 22 17.093392651589408 19.796603921034013 37.244062814116184 25.865940613260396 23 14.362723967538807 26.6671978940355 37.8168283229952 21.15324981543049 24 15.094185652444814 21.811267716512756 49.73449832135351 13.360048309688915 25 17.08369615202575 18.343953080462704 46.82007617032429 17.75227459718725 26 10.260144602649929 39.645146517948604 32.20524321413039 17.889465665271075 27 12.755793178464556 28.603905673220286 43.410844526710015 15.229456621605145 28 11.316775040250073 24.569489820115535 50.76194325531651 13.35179188431788 29 12.608425586086195 22.485318443606214 47.36058401728857 17.54567195301902 30 14.787929874147116 24.335621771233654 46.25911926982479 14.617329084794447 31 26.65606132027922 22.092754218697348 36.43224498926185 14.818939471761587 32 24.26198597751756 23.740199095057378 37.71189491682612 14.285920010598947 33 22.838904660368105 21.827876572201 34.93303174979575 20.400187017635147 34 15.677991730133936 23.800010176524296 35.47968391331521 25.042314180026555 35 17.013516536371952 21.465841920175727 37.646515548481055 23.87412599497126 36 28.940018989778356 21.169474651334035 32.18201001715608 17.708496341731525 37 16.849924108090047 28.446745576332095 33.88561778702839 20.81771252854947 38 18.220586724628053 31.52744829413611 29.531601468107638 20.720363513128195 39 17.167796484874902 26.55160793884101 32.2567018652801 24.02389371100399 40 19.912865910851725 21.436560411592406 35.67188581555722 22.97868786199865 41 15.497022406594388 20.888372168934144 36.3061904949343 27.308414929537168 42 19.327139734239108 24.183069911761855 28.926962317098575 27.56282803690046 43 18.996786714451527 22.36080002841746 30.691149208007197 27.951264049123807 44 16.604823480505715 25.610183436650658 34.26368526506486 23.521307817778773 45 18.360849950989476 32.63140917020045 27.70558739186243 21.30215348694765 46 21.875783040342238 27.573100566141168 29.88461165519248 20.666504738324118 47 21.390862057213187 24.088313029887303 29.66850452135294 24.852320391546574 48 18.5842534607383 25.236916205922928 33.45513160838046 22.72369872495831 49 19.17045966208179 23.381908635932923 34.23315569218126 23.214476009804024 50 17.702160015283987 27.50589710381879 33.39455248734415 21.397390393553074 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 532.0 1 823.5 2 1115.0 3 14361.0 4 27607.0 5 21955.5 6 16304.0 7 16407.0 8 16510.0 9 18082.5 10 19655.0 11 20878.5 12 22102.0 13 22116.5 14 22131.0 15 21623.0 16 21115.0 17 20069.5 18 19024.0 19 17968.0 20 16912.0 21 15778.5 22 14645.0 23 13317.0 24 11989.0 25 10870.5 26 9752.0 27 10098.0 28 10444.0 29 10931.5 30 11419.0 31 12561.5 32 13704.0 33 14828.5 34 15953.0 35 17247.5 36 18542.0 37 21096.0 38 23650.0 39 29971.5 40 36293.0 41 52010.5 42 67728.0 43 78198.5 44 88669.0 45 93907.0 46 99145.0 47 97118.0 48 95091.0 49 92706.5 50 90322.0 51 78689.5 52 67057.0 53 56653.5 54 46250.0 55 40251.0 56 34252.0 57 31420.5 58 28589.0 59 25435.5 60 22282.0 61 19604.5 62 16927.0 63 14704.5 64 12482.0 65 10131.0 66 7780.0 67 6502.0 68 5224.0 69 4454.5 70 3685.0 71 3283.5 72 2882.0 73 2352.0 74 1822.0 75 1362.5 76 903.0 77 740.5 78 578.0 79 400.5 80 223.0 81 177.0 82 131.0 83 99.5 84 68.0 85 61.5 86 55.0 87 47.5 88 40.0 89 28.5 90 17.0 91 10.5 92 4.0 93 4.0 94 4.0 95 3.5 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1041613.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.59510505917895 #Duplication Level Percentage of deduplicated Percentage of total 1 84.75369930494132 36.10092726048038 2 6.470626627425251 5.512340419877987 3 2.3791878074980057 3.040252638476856 4 1.2614632349139927 2.1492863607781305 5 0.7724698639865973 1.64517175057794 6 0.5655324209697699 1.44533477313475 7 0.3979701146365567 1.1866105190350338 8 0.3450991807316937 1.1759628687282462 9 0.2418652866163972 0.9272049564234481 >10 2.208268653659502 20.052703577517875 >50 0.43711982616817446 13.084213909015938 >100 0.16249936655122013 10.292892231662327 >500 0.0032104738070457078 0.8940324899139688 >1k 7.408785708567018E-4 0.6873288962346008 >5k 0.0 0.0 >10k+ 2.4695952361890056E-4 1.8057373481425092 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17166 1.6480209060370792 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2782 0.2670857602583685 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1931 0.18538555106359078 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1821 0.17482500698435985 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04253019115544833 0.0 2 0.0 0.0 0.0 0.1864416054715139 0.0 3 0.0 0.0 0.0 0.2584453151026341 0.0 4 0.0 0.0 0.0 0.38459581437635665 0.0 5 0.0 0.0 0.0 0.6822111475183201 0.0 6 0.0 0.0 0.0 0.8833415097545826 0.0 7 0.0 0.0 0.0 1.0077639199971582 0.0 8 0.0 0.0 0.0 1.306819327331744 0.0 9 0.0 0.0 0.0 1.442858336061474 0.0 10 0.0 0.0 0.0 1.7206006453452483 0.0 11 0.0 0.0 0.0 1.9668533322836792 0.0 12 0.0 0.0 0.0 2.2072497175054457 0.0 13 0.0 0.0 0.0 2.3217836182920144 0.0 14 0.0 0.0 0.0 2.3612416511698684 0.0 15 0.0 0.0 0.0 2.4082840747955334 0.0 16 0.0 0.0 0.0 2.5047690457012344 0.0 17 0.0 0.0 0.0 2.6486804600173 0.0 18 0.0 0.0 0.0 2.8521149409617585 0.0 19 0.0 0.0 0.0 2.9221025467232074 0.0 20 0.0 0.0 0.0 2.994298266246677 0.0 21 0.0 0.0 0.0 3.0833908562969166 0.0 22 0.0 0.0 0.0 3.170947367208359 0.0 23 0.0 0.0 0.0 3.2747287140233463 0.0 24 0.0 0.0 0.0 3.3523967154787813 0.0 25 0.0 0.0 0.0 3.406927524906083 0.0 26 0.0 0.0 0.0 3.468754710242672 0.0 27 0.0 0.0 0.0 3.5443106028822604 0.0 28 0.0 0.0 0.0 3.63897147981064 0.0 29 0.0 0.0 0.0 3.7362244902857396 0.0 30 0.0 0.0 0.0 3.847398217956189 0.0 31 0.0 0.0 0.0 3.9498354955247295 0.0 32 0.0 0.0 0.0 4.040848184498465 0.0 33 0.0 0.0 0.0 4.150389828083943 0.0 34 0.0 0.0 0.0 4.2530191155448325 0.0 35 0.0 0.0 0.0 4.416899558665262 0.0 36 0.0 0.0 0.0 4.5292253456898095 0.0 37 0.0 0.0 0.0 4.628974484765455 0.0 38 0.0 0.0 0.0 4.734387915665415 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCCGTA 40 8.310963E-9 44.0 39 GTACATT 20 7.8561413E-4 44.0 20 GTCGACG 25 4.4425517E-5 44.0 1 CCTACCG 25 4.4425517E-5 44.0 1 ATTAACG 30 2.5274876E-6 44.0 1 TAACGAG 20 7.8561413E-4 44.0 1 TCGATAA 25 4.4425517E-5 44.0 38 CGTTAGG 150 0.0 44.0 2 CTAACGA 50 2.7284841E-11 44.0 24 CCACTCG 20 7.8561413E-4 44.0 37 CGTAGTG 20 7.8561413E-4 44.0 1 CACTAGG 25 4.4425517E-5 44.0 2 GTACTAG 50 2.7284841E-11 44.0 1 TACTCGT 20 7.8561413E-4 44.0 16 CTATTAG 20 7.8561413E-4 44.0 1 CGGTCTA 220 0.0 44.0 31 GCTACGA 35 1.4459147E-7 44.0 10 ATACGTA 20 7.8561413E-4 44.0 26 CGCGTAC 20 7.8561413E-4 44.0 34 CACCGAA 20 7.8561413E-4 44.0 36 >>END_MODULE