##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546118_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 437820 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.298259558722762 28.0 25.0 31.0 16.0 33.0 2 26.4865241423416 30.0 25.0 31.0 16.0 33.0 3 26.76709378283313 30.0 25.0 31.0 16.0 33.0 4 27.0253574528345 30.0 19.0 35.0 10.0 35.0 5 31.260109177287468 33.0 30.0 35.0 19.0 35.0 6 30.15132246128546 33.0 28.0 35.0 17.0 35.0 7 30.25059613539811 32.0 28.0 35.0 17.0 35.0 8 32.55881640856973 35.0 32.0 35.0 28.0 35.0 9 27.500041112786075 31.0 23.0 34.0 10.0 37.0 10 31.533557169613083 34.0 28.0 37.0 17.0 39.0 11 33.90947192910328 35.0 32.0 39.0 27.0 39.0 12 33.611598373760906 37.0 32.0 39.0 25.0 39.0 13 34.13739436298022 37.0 32.0 39.0 26.0 39.0 14 33.971380932803434 36.0 32.0 39.0 25.0 41.0 15 32.52702937280161 35.0 29.0 39.0 19.0 40.0 16 31.058919190534922 34.0 27.0 38.0 17.0 40.0 17 31.35097528664748 34.0 27.0 38.0 17.0 40.0 18 32.21439175917043 35.0 29.0 38.0 18.0 39.0 19 31.924925768580696 35.0 29.0 37.0 18.0 39.0 20 32.112196793202685 34.0 30.0 37.0 21.0 39.0 21 32.93248366908775 35.0 31.0 37.0 25.0 39.0 22 33.182287241332055 35.0 31.0 37.0 25.0 39.0 23 34.33180759216116 35.0 33.0 38.0 28.0 40.0 24 33.93175962724407 35.0 33.0 38.0 26.0 40.0 25 32.82309168151295 35.0 31.0 38.0 23.0 39.0 26 26.18183043259787 33.0 18.0 36.0 0.0 39.0 27 29.66083778721849 34.0 24.0 37.0 15.0 39.0 28 31.177470193230093 34.0 27.0 37.0 19.0 39.0 29 32.26507697227171 34.0 30.0 37.0 22.0 39.0 30 32.16248229866155 35.0 30.0 37.0 21.0 39.0 31 31.04375542460372 34.0 29.0 36.0 18.0 39.0 32 31.242428395230917 34.0 30.0 37.0 18.0 39.0 33 30.65074688228039 34.0 28.0 37.0 15.0 39.0 34 30.117253665890093 34.0 27.0 37.0 11.0 39.0 35 28.995863596911974 33.0 24.0 37.0 8.0 39.0 36 28.70284363437029 33.0 23.0 37.0 8.0 39.0 37 28.76500388287424 33.0 23.0 37.0 7.0 39.0 38 28.473272120962953 33.0 23.0 37.0 7.0 39.0 39 28.354545246905122 33.0 22.0 37.0 7.0 39.0 40 28.187275592709334 33.0 22.0 36.0 7.0 38.0 41 27.539045726554292 32.0 21.0 36.0 7.0 38.0 42 27.736807363756796 33.0 21.0 36.0 7.0 38.0 43 27.369119729569228 32.0 20.0 36.0 7.0 38.0 44 27.173900232972453 32.0 19.0 36.0 7.0 38.0 45 26.656842994838062 31.0 19.0 35.0 7.0 38.0 46 26.15371842309625 31.0 18.0 35.0 7.0 38.0 47 26.138481567767577 31.0 18.0 35.0 7.0 38.0 48 26.153588232607007 31.0 18.0 34.0 7.0 37.0 49 25.929016490795306 30.0 18.0 34.0 7.0 37.0 50 27.60516650678361 33.0 20.0 37.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 8.0 12 20.0 13 60.0 14 127.0 15 336.0 16 763.0 17 1409.0 18 2451.0 19 3867.0 20 5808.0 21 8029.0 22 10933.0 23 14089.0 24 18257.0 25 21596.0 26 25187.0 27 25426.0 28 26131.0 29 28519.0 30 32980.0 31 38036.0 32 42433.0 33 43775.0 34 40143.0 35 30370.0 36 14169.0 37 2817.0 38 77.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.01882051984834 21.023479968937007 23.70471883422411 32.252980676990546 2 46.90900370015075 15.949476953999362 25.300808551459504 11.840710794390388 3 26.2279018774839 12.821479146681284 48.85295326846649 12.097665707368325 4 23.275547028459183 21.428669316157325 42.762094011237494 12.533689644145996 5 16.740898085971402 25.125165593166145 45.14435156000183 12.989584760860629 6 14.662418345438766 32.08327623224156 44.53428349550043 8.720021926819241 7 69.11287743821661 2.7189255858572015 26.676031245717418 1.4921657302087616 8 70.06326800968435 2.159563290850121 26.06276552007674 1.71440317938879 9 58.868713169795804 3.1640856973185327 25.20282307797725 12.76437805490841 10 30.46046320405646 25.878671600201 33.12228769814079 10.538577497601755 11 26.466584441094515 19.39495683157462 40.97071856013887 13.167740167191996 12 24.795121282718927 17.26737015211731 44.80288703120004 13.134621533963731 13 18.2079393358001 23.76753003517427 44.22639440866109 13.798136220364535 14 13.95459321182221 28.083230551368143 43.9011465899228 14.06102964688685 15 13.120232058836963 20.388972637156822 48.636882737197936 17.853912566808276 16 14.811794801516607 15.808323055136814 49.02699739619021 20.352884747156367 17 15.337124845827052 17.06934356584898 44.15239139372345 23.44114019460052 18 16.984377141290942 21.098625005710108 45.605271572792475 16.31172628020648 19 20.325476223105383 22.4797862135124 41.66027134438811 15.534466218994108 20 21.568681193184414 20.129048467406697 41.71600200995843 16.58626832945046 21 19.558722762779222 21.492394134575854 43.529304280297836 15.419578822347082 22 17.587364670412498 18.92901192270796 42.11228358686218 21.37133982001736 23 15.555251016399433 23.12594216801425 42.37129413914394 18.947512676442376 24 15.876615960897173 21.547211182677813 47.9797633730757 14.596409483349321 25 18.399342195422776 19.661733132337492 44.529943812525694 17.40898085971404 26 12.300945594079758 36.06002466767165 34.89561920423919 16.74341053400941 27 14.997259147594901 23.021104563519255 44.70421634461651 17.277419944269333 28 14.801059796263305 22.047416746608196 47.440729066739756 15.710794390388743 29 16.082179891279523 21.7006989173633 45.39582476816957 16.82129642318761 30 17.459686629208353 21.240920926408112 45.96889132520214 15.3305011191814 31 22.979534968708602 21.59837376090631 40.48672970627199 14.935361564113107 32 21.434836234068797 21.75094787812343 40.170161253483165 16.644054634324608 33 20.282764606459274 21.035585400392858 39.34493627518158 19.336713717966287 34 16.83614270704856 22.958293362569094 39.05943081631721 21.14613311406514 35 17.918094193960986 22.97519528573386 37.90598876250514 21.200721757800007 36 23.327166415421864 23.06495820200082 34.20903567676214 19.398839705815174 37 17.333835822940934 26.787949385592253 34.22685121739528 21.651363574071535 38 19.02585537435476 28.124343337444614 32.99552327440501 19.85427801379562 39 18.6807363756795 24.163583207710932 33.208396144534284 23.94728427207528 40 19.654195788223472 22.495089306107534 36.0881184048239 21.762596500845095 41 17.580969348133937 22.630989904526974 35.42072084418254 24.36731990315655 42 18.816408569731855 24.871408341327488 31.357178749257685 24.955004339682972 43 18.94865469827783 23.37421771504271 33.11497875839386 24.562148828285597 44 18.207710931433006 24.681147503540267 34.30884838518112 22.8022931798456 45 19.2745877301174 27.17760723585035 31.701155726097486 21.84664930793477 46 20.186834772280847 24.502078479740533 32.87081448997305 22.44027225800557 47 19.252660910876614 23.90868393403682 32.61248915079256 24.226166004294004 48 18.00808551459504 25.22132383171166 33.86460189118816 22.90598876250514 49 18.894522863277146 24.820702571833174 33.78603078890868 22.498743775980998 50 18.221415193458498 24.43606961765109 35.54086154127267 21.80165364761774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 218.0 1 378.0 2 538.0 3 9270.0 4 18002.0 5 13850.5 6 9699.0 7 9249.5 8 8800.0 9 9175.0 10 9550.0 11 9668.0 12 9786.0 13 9617.0 14 9448.0 15 9132.0 16 8816.0 17 8390.0 18 7964.0 19 7497.5 20 7031.0 21 6598.0 22 6165.0 23 5701.0 24 5237.0 25 5144.5 26 5052.0 27 5225.5 28 5399.0 29 5639.5 30 5880.0 31 6507.5 32 7135.0 33 8325.5 34 9516.0 35 9910.5 36 10305.0 37 11464.5 38 12624.0 39 14492.5 40 16361.0 41 19022.0 42 21683.0 43 23436.0 44 25189.0 45 26271.5 46 27354.0 47 28891.0 48 30428.0 49 31566.0 50 32704.0 51 30048.0 52 27392.0 53 24623.0 54 21854.0 55 19757.5 56 17661.0 57 16853.5 58 16046.0 59 14402.0 60 12758.0 61 11107.5 62 9457.0 63 8249.0 64 7041.0 65 5860.0 66 4679.0 67 4034.0 68 3389.0 69 2920.5 70 2452.0 71 2090.5 72 1729.0 73 1434.0 74 1139.0 75 879.0 76 619.0 77 479.0 78 339.0 79 250.0 80 161.0 81 136.0 82 111.0 83 79.5 84 48.0 85 39.5 86 31.0 87 22.5 88 14.0 89 12.5 90 11.0 91 8.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 437820.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.45288431450396 #Duplication Level Percentage of deduplicated Percentage of total 1 85.45378090806514 47.38658626931903 2 6.359231154451435 7.052754190739698 3 2.406666293468349 4.003697626659492 4 1.2965351370915938 2.8758645186731875 5 0.8334621565925321 2.3108940275021337 6 0.6111454983532583 2.033386837170786 7 0.4050590947605635 1.5723186585606657 8 0.3276919308326155 1.453717018500597 9 0.2652032601896811 1.3235657136414913 >10 1.893257604897457 20.822852852978198 >50 0.1270198312342732 4.457496782585295 >100 0.01961007920805503 1.6830535090569236 >500 8.913672367297742E-4 0.2567830537312986 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 4.456836183648871E-4 2.767028940881251 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11196 2.5572152939564203 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 535 0.12219633639395185 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 504 0.1151158010141154 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04568087341829976 0.0 2 0.0 0.0 0.0 0.17701338449591156 0.0 3 0.0 0.0 0.0 0.2450778858891782 0.0 4 0.0 0.0 0.0 0.3227353707002878 0.0 5 0.0 0.0 0.0 0.5803754967794984 0.0 6 0.0 0.0 0.0 0.7151340733634827 0.0 7 0.0 0.0 0.0 0.8026129459595267 0.0 8 0.0 0.0 0.0 0.9862500571010918 0.0 9 0.0 0.0 0.0 1.0798958476086062 0.0 10 0.0 0.0 0.0 1.2882006303960531 0.0 11 0.0 0.0 0.0 1.493307752044219 0.0 12 0.0 0.0 0.0 1.6904207208441826 0.0 13 0.0 0.0 0.0 1.801882051984834 0.0 14 0.0 0.0 0.0 1.856927504453885 0.0 15 0.0 0.0 0.0 1.912658170024211 0.0 16 0.0 0.0 0.0 2.0033347037595357 0.0 17 0.0 0.0 0.0 2.1399205152802523 0.0 18 0.0 0.0 0.0 2.3226440089534512 0.0 19 0.0 0.0 0.0 2.3929925540176327 0.0 20 0.0 0.0 0.0 2.4640263121830888 0.0 21 0.0 0.0 0.0 2.55104837604495 0.0 22 0.0 0.0 0.0 2.638070439906811 0.0 23 0.0 0.0 0.0 2.7308026129459595 0.0 24 0.0 0.0 0.0 2.8100589283267094 0.0 25 0.0 0.0 0.0 2.8678452332008586 0.0 26 0.0 0.0 0.0 2.935681330227034 0.0 27 0.0 0.0 0.0 3.021332967886346 0.0 28 0.0 0.0 0.0 3.1099538623178473 0.0 29 0.0 0.0 0.0 3.211365401306473 0.0 30 0.0 0.0 0.0 3.312548535928007 0.0 31 0.0 0.0 0.0 3.4217258233977432 0.0 32 0.0 0.0 0.0 3.525649810424375 0.0 33 0.0 0.0 0.0 3.622493262071171 0.0 34 0.0 0.0 0.0 3.7307569320725413 0.0 35 0.0 0.0 0.0 3.872596044036362 0.0 36 0.0 0.0 0.0 3.974235987392079 0.0 37 0.0 0.0 0.0 4.086154127266913 0.0 38 0.0 0.0 0.0 4.2058380156228585 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 25 4.438311E-5 44.0 1 CGAACTG 20 7.851137E-4 44.0 20 CGAACGG 25 4.438311E-5 44.0 2 GTCGAAT 25 4.438311E-5 44.0 30 TAGCGGC 20 7.851137E-4 44.0 3 TACGGCA 25 4.438311E-5 44.0 4 TAACGCC 20 7.851137E-4 44.0 12 CGTTCGA 25 4.438311E-5 44.0 14 TCGATAG 55 1.8189894E-12 44.0 1 TAGCACG 35 1.4433317E-7 44.0 1 CACTACG 20 7.851137E-4 44.0 36 TCATGCG 20 7.851137E-4 44.0 34 CGAATGC 25 4.438311E-5 44.0 32 TCGTAGA 20 7.851137E-4 44.0 15 CCGACTC 30 2.5241116E-6 44.0 27 TATAGCG 20 7.851137E-4 44.0 1 TAAGGTG 20 7.851137E-4 44.0 17 CGTCGGG 25 4.438311E-5 44.0 3 TAGTGTC 20 7.851137E-4 44.0 33 CGCGTCA 20 7.851137E-4 44.0 39 >>END_MODULE