SRR1546116_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546116_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	768608
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21237	2.7630469628211	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT	3489	0.45393750780632003	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2452	0.31901827719721887	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2329	0.3030153212040468	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2286	0.29742079187310044	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	2174	0.2828489945459844	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1909	0.24837108122736165	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATG	1625	0.21142116657646032	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	1352	0.17590241059161496	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	1107	0.14402660393854866	No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT	1008	0.1311461759440443	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	956	0.12438069861359757	No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	856	0.11137016528581539	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTAG	30	2.5266181E-6	44.000004	1
CCGGATA	25	4.4414584E-5	44.0	20
TAGCCGT	95	0.0	44.0	44
CGGATAA	25	4.4414584E-5	44.0	21
CGTTTTT	11455	0.0	43.13575	1
AACGGGC	80	0.0	41.250004	4
TCACGAC	185	0.0	40.43243	25
GACCGGG	60	3.6379788E-12	40.333336	3
TACGGGA	115	0.0	40.173916	4
GTTTTTT	12735	0.0	39.750294	2
TCGTTTA	45	2.3492248E-8	39.11111	38
ATAGCGG	90	0.0	39.11111	2
AGGGTAC	585	0.0	38.735046	6
GAAGCGT	125	0.0	38.72	29
TAGGGTA	500	0.0	38.72	5
TACGCGG	40	4.1221574E-7	38.500004	2
TATCGGG	40	4.1221574E-7	38.500004	3
CGACGGT	200	0.0	38.5	28
GACGGTC	195	0.0	38.35897	29
CGGTCTA	195	0.0	38.35897	31