SRR1546115_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546115_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	760780
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21178	2.7837219695575595	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT	3525	0.4633402560529983	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2368	0.31125949683219856	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2244	0.29496043534267463	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2199	0.2890454533505087	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	2116	0.27813559767606927	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1787	0.2348905071111228	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATG	1606	0.21109913509818873	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	1416	0.18612476668682143	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	1064	0.13985646310365676	No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT	1021	0.13420436920003156	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1019	0.13394148111149085	No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	836	0.10988722101001605	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGAC	20	7.854802E-4	44.0	15
TAGCACG	20	7.854802E-4	44.0	1
TCGTAAG	20	7.854802E-4	44.0	1
TCGACGG	20	7.854802E-4	44.0	2
TACGTAG	40	8.305506E-9	44.0	1
CGTTTTT	10935	0.0	43.215366	1
TACGGGA	105	0.0	41.90476	4
TCGTTTA	65	0.0	40.615387	38
ATAGCGG	65	0.0	40.615387	2
GCGATAT	60	3.6379788E-12	40.333332	9
TGCGTAG	60	3.6379788E-12	40.333332	1
CGGTCTA	225	0.0	40.08889	31
CGTAAGG	110	0.0	40.0	2
TACGGGC	105	0.0	39.80952	4
GCGTAAG	50	1.3460522E-9	39.600002	1
TAACGGG	140	0.0	39.285713	3
AGGGTAC	575	0.0	39.02609	6
GTTTTTT	12370	0.0	38.94907	2
ATAGGGC	255	0.0	38.823532	4
CGGGTAT	40	4.1220846E-7	38.5	6