##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546115_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 760780 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.586077446830885 30.0 28.0 31.0 16.0 33.0 2 28.691638844343963 31.0 28.0 33.0 16.0 33.0 3 28.231189042824468 31.0 27.0 33.0 16.0 34.0 4 32.1368135334788 35.0 32.0 35.0 25.0 37.0 5 33.661983753516125 35.0 33.0 35.0 28.0 37.0 6 33.5061528957123 35.0 33.0 37.0 28.0 37.0 7 34.1206906070086 35.0 33.0 37.0 30.0 37.0 8 34.47713530849917 35.0 35.0 37.0 31.0 37.0 9 36.262818423197245 39.0 35.0 39.0 31.0 39.0 10 35.962112568679515 37.0 35.0 39.0 31.0 39.0 11 36.23651646993875 38.0 35.0 39.0 31.0 39.0 12 35.3208693709088 37.0 34.0 39.0 29.0 39.0 13 35.83166749914562 37.0 35.0 39.0 30.0 39.0 14 36.644936775414706 38.0 35.0 40.0 31.0 41.0 15 36.88699755514077 38.0 35.0 40.0 31.0 41.0 16 36.46959567811982 38.0 35.0 40.0 31.0 41.0 17 35.93259549409816 38.0 34.0 40.0 30.0 41.0 18 35.58239569915087 38.0 34.0 39.0 29.0 40.0 19 35.03245879229212 37.0 33.0 39.0 27.0 40.0 20 35.2741134099214 36.0 34.0 39.0 29.0 40.0 21 35.56223349720024 36.0 34.0 39.0 30.0 40.0 22 35.87402665685218 37.0 34.0 40.0 31.0 41.0 23 36.18791372012934 37.0 35.0 40.0 31.0 41.0 24 35.80556928415574 37.0 35.0 40.0 31.0 41.0 25 35.53505744104734 37.0 34.0 40.0 30.0 41.0 26 35.60428376140277 37.0 34.0 40.0 30.0 41.0 27 35.95354241699309 37.0 35.0 40.0 31.0 41.0 28 35.83865375009858 37.0 35.0 40.0 30.0 41.0 29 35.84459239201872 37.0 35.0 40.0 30.0 41.0 30 35.46701411709036 37.0 35.0 40.0 29.0 41.0 31 34.74698335918399 36.0 34.0 40.0 26.0 41.0 32 34.70147611661716 37.0 34.0 40.0 25.0 41.0 33 34.35299955309025 37.0 34.0 40.0 22.0 41.0 34 33.88426089013907 37.0 33.0 40.0 19.0 41.0 35 33.54257998370094 37.0 33.0 40.0 16.0 41.0 36 33.205598201845476 37.0 33.0 40.0 15.0 41.0 37 33.18436735981493 37.0 33.0 40.0 15.0 41.0 38 32.96915534057152 37.0 32.0 40.0 14.0 41.0 39 32.697356660269726 36.0 32.0 40.0 12.0 41.0 40 32.51611898314887 36.0 31.0 40.0 11.0 40.0 41 32.111018954231184 35.0 31.0 39.0 10.0 40.0 42 32.35539446357686 36.0 31.0 40.0 10.0 41.0 43 32.19676253318962 35.0 31.0 40.0 10.0 40.0 44 32.060750808380874 35.0 31.0 39.0 10.0 40.0 45 31.94844370251584 35.0 31.0 39.0 10.0 40.0 46 31.733813980388547 35.0 30.0 39.0 10.0 40.0 47 31.697791740056257 35.0 30.0 39.0 10.0 40.0 48 31.628236809590156 35.0 30.0 39.0 10.0 40.0 49 31.633704881831804 35.0 30.0 39.0 10.0 40.0 50 31.773524540603066 35.0 30.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 3.0 11 8.0 12 8.0 13 17.0 14 47.0 15 95.0 16 248.0 17 482.0 18 1034.0 19 1839.0 20 2746.0 21 4086.0 22 5821.0 23 8173.0 24 11690.0 25 17210.0 26 23344.0 27 25977.0 28 24851.0 29 23457.0 30 25059.0 31 29338.0 32 37049.0 33 51200.0 34 73337.0 35 71719.0 36 78965.0 37 105865.0 38 113095.0 39 24015.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.84295065590578 20.46386603223008 22.94750124871842 25.74568206314572 2 43.70816793291096 20.29338310681143 24.335813244301903 11.662635715975709 3 29.367885591103864 19.169667972344172 38.668866163674124 12.793580272877836 4 25.85346617944741 22.706958647703672 37.23073687531218 14.208838297536738 5 19.971739530481873 26.315623439101977 37.125844527984434 16.586792502431717 6 17.807513341570495 36.75175477799101 35.71006072714845 9.730671153290045 7 69.37511501353873 5.796156576145535 21.664738820684036 3.1639895896316936 8 69.50761061016325 5.765398669786272 20.610951917768606 4.116038802281868 9 66.21927495465181 5.881069428744183 21.695365282999028 6.204290333604985 10 33.094192802124134 24.860274980940613 28.422671468755752 13.6228607481795 11 28.2105207813034 22.50558637188149 31.928152685401823 17.355740161413287 12 25.30087541733484 19.693078156628722 38.83054233812666 16.175504087909776 13 20.81363863403349 24.300717684481715 38.846447067483375 16.03919661400142 14 17.076684455427323 30.975446252530297 37.043560556271196 14.904308735771183 15 16.520807592207998 24.12497699729225 43.22261363337627 16.13160177712348 16 18.30489760508951 18.866558006256735 44.33173847892952 18.49680590972423 17 17.380583085780383 19.260495806934987 37.844449118010466 25.514471989274167 18 19.030205841373327 23.60537869029154 38.551618076184965 18.812797392150163 19 22.82118352217461 25.54509845158916 33.48668471831541 18.147033307920818 20 23.020978469465547 23.001524750913536 33.56541970083335 20.41207707878756 21 22.618628249953996 23.538999447935012 36.90883041089408 16.93354189121691 22 19.239859091984542 20.04797707615868 36.13528221036305 24.57688162149373 23 18.577775440994767 26.50358842240858 34.58871158547806 20.329924551118587 24 19.369200031546573 25.481873866295118 38.44712006099004 16.701806041168275 25 23.135860564157838 21.998212360997922 36.17300665106864 18.6929204237756 26 16.936433660190854 23.865769341991115 35.178763900207684 24.019033097610347 27 18.04043218801756 23.176608217881647 38.55582428560162 20.22713530849917 28 17.19669286784616 23.564236704434922 41.178527300927996 18.060543126790925 29 18.493256920528932 25.00814953074476 37.77636110307842 18.722232445647887 30 19.007334577670285 22.679355398406898 40.2531612292647 18.060148794658115 31 24.928494439916925 23.440942190909333 33.29096453639686 18.339598832776886 32 22.696968900339126 25.517363758248113 33.14256421041563 18.643103130997137 33 21.40750282604695 22.470753700149846 32.10455059281264 24.017192880990564 34 18.862746128972894 24.710954546649493 32.518862220352794 23.90743710402482 35 19.547963931754254 23.138095112910435 33.11206919214491 24.20187176319041 36 25.36278556218618 24.63274534030863 29.88091169589106 20.123557401614136 37 19.768264149951364 26.578117195509872 31.00462683035832 22.64899182418045 38 20.63513762191435 29.59541523173585 28.239964247219955 21.52948289912984 39 20.086884513262703 25.03062646231499 29.004179920607797 25.878309103814505 40 20.260653539788112 23.41557349036515 34.60855963616288 21.71521333368385 41 19.108283603669918 23.31396724414417 34.233418333815294 23.344330818370622 42 20.949420331764767 27.310129078051474 28.721838113515076 23.018612476668682 43 20.212545019585164 24.676253318962118 29.908777833276375 25.202423828176347 44 20.17705512763217 24.520886458634557 33.040826520150375 22.261231893582902 45 21.749125897105603 26.442729829911404 30.091222166723625 21.716922106259364 46 23.84224085806672 24.871710612792132 30.121980073082888 21.164068456058256 47 22.40910644338705 26.168406109519175 30.052971949840952 21.36951549725282 48 19.3761665658929 28.42214569257867 30.48713162806593 21.7145561134625 49 19.266673677015696 27.209180052051842 31.981256079287046 21.542890191645416 50 19.793632850495545 24.277977864822944 34.60225032203791 21.326138962643604 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2191.0 1 2093.0 2 1995.0 3 16887.5 4 31780.0 5 21489.0 6 11198.0 7 11010.5 8 10823.0 9 10941.5 10 11060.0 11 10889.5 12 10719.0 13 10222.5 14 9726.0 15 9128.0 16 8530.0 17 7902.0 18 7274.0 19 6696.0 20 6118.0 21 5865.5 22 5613.0 23 5463.5 24 5314.0 25 5361.5 26 5409.0 27 5841.0 28 6273.0 29 6728.0 30 7183.0 31 8166.5 32 9150.0 33 10934.0 34 12718.0 35 14762.0 36 16806.0 37 18332.5 38 19859.0 39 23334.0 40 26809.0 41 31398.5 42 35988.0 43 40475.5 44 44963.0 45 47760.5 46 50558.0 47 58885.5 48 67213.0 49 69991.0 50 72769.0 51 66081.0 52 59393.0 53 50503.0 54 41613.0 55 37393.5 56 33174.0 57 31494.0 58 29814.0 59 27957.5 60 26101.0 61 23486.0 62 20871.0 63 18262.5 64 15654.0 65 13092.0 66 10530.0 67 9430.0 68 8330.0 69 7213.0 70 6096.0 71 5331.5 72 4567.0 73 3935.0 74 3303.0 75 2439.5 76 1576.0 77 1191.0 78 806.0 79 611.5 80 417.0 81 333.0 82 249.0 83 193.5 84 138.0 85 92.5 86 47.0 87 38.0 88 29.0 89 21.0 90 13.0 91 12.0 92 11.0 93 7.5 94 4.0 95 3.0 96 2.0 97 2.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 760780.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.54240112648608 #Duplication Level Percentage of deduplicated Percentage of total 1 75.32348464706504 26.018540209236363 2 7.75965381258237 5.360741491937745 3 3.663315468689645 3.796191371170172 4 2.397615356147639 3.3127756551629806 5 1.6890650469691089 2.9172181190567 6 1.2957350230119902 2.6854679351110096 7 1.034992284440009 2.5025783056361477 8 0.8185973706179177 2.2621054989576717 9 0.6612776067735497 2.0557904714221213 >10 5.065413963687561 34.36880943576677 >50 0.2371305305902976 5.117025432593466 >100 0.04374252424593433 2.9316829526117654 >500 0.005371888942483163 1.1649062557305847 >1k 0.004220769883379627 2.6992053587385776 >5k 0.0 0.0 >10k+ 3.8370635303451155E-4 2.80696150686794 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21178 2.7837219695575595 No Hit GAATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT 3525 0.4633402560529983 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2368 0.31125949683219856 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2244 0.29496043534267463 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2199 0.2890454533505087 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC 2116 0.27813559767606927 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1787 0.2348905071111228 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATG 1606 0.21109913509818873 No Hit GAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC 1416 0.18612476668682143 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 1064 0.13985646310365676 No Hit GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT 1021 0.13420436920003156 No Hit GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1019 0.13394148111149085 No Hit GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 836 0.10988722101001605 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030495018270722155 0.0 2 0.0 0.0 0.0 0.1848103262441179 0.0 3 0.0 0.0 0.0 0.2500065722022135 0.0 4 0.0 0.0 0.0 0.537869029154289 0.0 5 1.314440442703541E-4 0.0 0.0 1.2174347380320198 0.0 6 1.314440442703541E-4 0.0 0.0 1.5695733326322985 0.0 7 1.314440442703541E-4 0.0 0.0 1.7918452114934673 0.0 8 1.314440442703541E-4 0.0 0.0 2.192223770340966 0.0 9 1.314440442703541E-4 0.0 0.0 2.3414127605878177 0.0 10 2.628880885407082E-4 0.0 0.0 2.8519414285338733 0.0 11 2.628880885407082E-4 0.0 0.0 3.0313625489629064 0.0 12 3.9433213281106234E-4 0.0 0.0 3.412024501169852 0.0 13 3.9433213281106234E-4 0.0 0.0 3.5228318304897606 0.0 14 5.257761770814164E-4 0.0 0.0 3.5810615421015273 0.0 15 6.572202213517706E-4 0.0 0.0 3.6553274271142775 0.0 16 6.572202213517706E-4 0.0 0.0 3.739057283314493 0.0 17 6.572202213517706E-4 0.0 0.0 3.817792265832435 0.0 18 7.886642656221247E-4 0.0 0.0 3.9530481873866297 0.0 19 7.886642656221247E-4 0.0 0.0 4.029417177107705 0.0 20 0.0010515523541628328 0.0 0.0 4.091853098136124 0.0 21 0.0010515523541628328 0.0 0.0 4.164410210573359 0.0 22 0.0010515523541628328 0.0 0.0 4.252872052367307 0.0 23 0.001182996398433187 0.0 0.0 4.347906096374773 0.0 24 0.001182996398433187 0.0 0.0 4.41717710770525 0.0 25 0.001182996398433187 0.0 0.0 4.470017613501932 0.0 26 0.001182996398433187 0.0 0.0 4.542574725939168 0.0 27 0.001182996398433187 0.0 0.0 4.622755592944084 0.0 28 0.001182996398433187 0.0 0.0 4.705959672967218 0.0 29 0.001182996398433187 0.0 0.0 4.785088987617971 0.0 30 0.001182996398433187 0.0 0.0 4.881963248245222 0.0 31 0.001182996398433187 0.0 0.0 4.964904440179815 0.0 32 0.001182996398433187 0.0 0.0 5.0494229606456535 0.0 33 0.001182996398433187 0.0 0.0 5.1595730697442095 0.0 34 0.001182996398433187 0.0 0.0 5.262493756407897 0.0 35 0.001182996398433187 0.0 0.0 5.395909461342306 0.0 36 0.001182996398433187 0.0 0.0 5.483056862693552 0.0 37 0.001182996398433187 0.0 0.0 5.575724913904151 0.0 38 0.001182996398433187 0.0 0.0 5.693235889481848 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGAC 20 7.854802E-4 44.0 15 TAGCACG 20 7.854802E-4 44.0 1 TCGTAAG 20 7.854802E-4 44.0 1 TCGACGG 20 7.854802E-4 44.0 2 TACGTAG 40 8.305506E-9 44.0 1 CGTTTTT 10935 0.0 43.215366 1 TACGGGA 105 0.0 41.90476 4 TCGTTTA 65 0.0 40.615387 38 ATAGCGG 65 0.0 40.615387 2 GCGATAT 60 3.6379788E-12 40.333332 9 TGCGTAG 60 3.6379788E-12 40.333332 1 CGGTCTA 225 0.0 40.08889 31 CGTAAGG 110 0.0 40.0 2 TACGGGC 105 0.0 39.80952 4 GCGTAAG 50 1.3460522E-9 39.600002 1 TAACGGG 140 0.0 39.285713 3 AGGGTAC 575 0.0 39.02609 6 GTTTTTT 12370 0.0 38.94907 2 ATAGGGC 255 0.0 38.823532 4 CGGGTAT 40 4.1220846E-7 38.5 6 >>END_MODULE