SRR1546114_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546114_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	634815
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10689	1.6837976418326601	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT	1961	0.3089088947173586	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1478	0.23282373604908516	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1431	0.22542000425320763	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1296	0.20415396611611256	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1047	0.16492994021880392	No Hit
GAATGATACGGCTGCCTCTTATACACATCTGACGCCCTACGCATCGTATG	939	0.14791710970912786	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC	679	0.106960295519167	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATT	65	0.0	44.000004	9
TCGATAG	30	2.5259178E-6	44.000004	1
TACGTAG	30	2.5259178E-6	44.000004	1
TCGTTTA	35	1.4447141E-7	44.0	38
ACGTTAG	20	7.853815E-4	44.0	1
TCACTCG	50	2.7284841E-11	44.0	21
CTCGAAT	35	1.4447141E-7	44.0	22
GACTCGA	20	7.853815E-4	44.0	9
CGTTTTT	9980	0.0	43.316635	1
ATTATGA	485	0.0	42.185566	26
AGGGTAC	470	0.0	40.723408	6
ACGGGCT	130	0.0	40.615387	5
GTTTTTT	11040	0.0	40.054348	2
CGACGGT	260	0.0	39.769234	28
CGGTCTA	260	0.0	39.769234	31
CGTTCGA	95	0.0	39.36842	14
TACGAGG	140	0.0	39.285713	2
CGTTCAC	45	2.3481334E-8	39.111107	21
AGGGTAA	260	0.0	38.92308	6
AGATTAT	520	0.0	38.92308	24