##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546113_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1291642 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.984070663542994 31.0 28.0 33.0 23.0 33.0 2 28.980552660876622 31.0 28.0 33.0 16.0 33.0 3 28.40693551309109 31.0 28.0 33.0 16.0 34.0 4 32.140074416904994 35.0 32.0 35.0 25.0 37.0 5 33.729304249939226 35.0 33.0 35.0 30.0 37.0 6 33.58458922828462 35.0 33.0 37.0 28.0 37.0 7 34.21367298369053 35.0 33.0 37.0 30.0 37.0 8 34.688003332192665 35.0 35.0 37.0 32.0 37.0 9 36.540073023329995 39.0 37.0 39.0 32.0 39.0 10 36.26937417643589 38.0 35.0 39.0 31.0 39.0 11 36.439963240588334 39.0 35.0 39.0 32.0 39.0 12 35.455808188337016 37.0 35.0 39.0 30.0 39.0 13 35.698441208941794 37.0 35.0 39.0 30.0 39.0 14 36.46222560121148 38.0 35.0 40.0 30.0 41.0 15 36.95439603233714 39.0 35.0 40.0 31.0 41.0 16 36.63467199115544 38.0 35.0 40.0 31.0 41.0 17 36.18062048152662 38.0 34.0 40.0 30.0 41.0 18 35.75861577743678 38.0 34.0 39.0 29.0 40.0 19 35.219126507190076 37.0 34.0 39.0 29.0 41.0 20 35.41714344996524 35.0 34.0 39.0 30.0 41.0 21 35.63999312503 36.0 34.0 39.0 31.0 41.0 22 35.928189854464314 36.0 35.0 40.0 31.0 41.0 23 36.2351541681054 37.0 35.0 40.0 32.0 41.0 24 35.904309398424644 36.0 35.0 40.0 31.0 41.0 25 35.56319010995307 36.0 34.0 40.0 30.0 41.0 26 35.63082572415576 36.0 34.0 40.0 31.0 41.0 27 35.94838817567097 37.0 35.0 40.0 31.0 41.0 28 35.84772096292936 36.0 35.0 40.0 31.0 41.0 29 35.9236351868397 37.0 35.0 40.0 31.0 41.0 30 35.545308220079555 36.0 35.0 40.0 30.0 41.0 31 34.836376488221966 36.0 34.0 40.0 27.0 41.0 32 34.64229020115481 36.0 34.0 40.0 25.0 41.0 33 34.1728334941106 36.0 33.0 40.0 22.0 41.0 34 33.66445346311129 36.0 33.0 40.0 18.0 41.0 35 33.27395748976884 36.0 33.0 40.0 15.0 41.0 36 32.85384495084551 36.0 33.0 40.0 12.0 41.0 37 32.75206907177066 36.0 33.0 40.0 10.0 41.0 38 32.597784060908516 36.0 32.0 40.0 10.0 41.0 39 32.4195582057567 36.0 32.0 40.0 10.0 41.0 40 32.25194597264567 35.0 31.0 40.0 10.0 40.0 41 31.9632150394614 35.0 31.0 39.0 10.0 40.0 42 32.12833819278097 35.0 31.0 40.0 10.0 40.0 43 31.92636194858947 35.0 31.0 39.0 10.0 40.0 44 31.677622746860198 35.0 31.0 39.0 10.0 40.0 45 31.650287773237476 35.0 30.0 39.0 10.0 40.0 46 31.515783011082018 35.0 30.0 39.0 10.0 40.0 47 31.48702117150108 35.0 30.0 39.0 10.0 40.0 48 31.479725032168357 35.0 30.0 39.0 10.0 40.0 49 31.449138383545904 35.0 30.0 39.0 10.0 40.0 50 31.635546072363706 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 5.0 12 17.0 13 18.0 14 72.0 15 150.0 16 440.0 17 847.0 18 1608.0 19 2840.0 20 4340.0 21 6546.0 22 9471.0 23 13369.0 24 20085.0 25 30307.0 26 42732.0 27 47669.0 28 43025.0 29 39529.0 30 41111.0 31 47664.0 32 60742.0 33 89274.0 34 139600.0 35 113814.0 36 119276.0 37 171281.0 38 200173.0 39 45634.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.739232697605065 21.03547267741371 23.944637910504614 26.280656714476613 2 44.13692029215526 18.852592281762284 25.266134114561154 11.744353311521303 3 28.11545304349038 17.90829037767431 41.634137013197154 12.342119565638157 4 24.393678743800525 22.857184885595235 39.00105447174991 13.748081898854325 5 19.936483948338626 26.947327510254386 39.08435928840964 14.031829252997346 6 17.98888546516759 34.82706508459775 37.84957441767921 9.33447503255546 7 71.27145137739404 4.60715894961607 21.77662231485195 2.344767358137936 8 71.88439211484297 3.9400236288383317 21.385260002384562 2.7903242539341395 9 68.21696724014859 5.165595420402867 22.636458089780295 3.980979249668252 10 36.38190768030151 25.323580372889705 27.89844244767513 10.39606949913366 11 32.18980181815085 20.210321435815807 34.712946776273924 12.886929969759423 12 28.93394609342217 20.155739748320357 38.09012094682582 12.820193211431652 13 19.364808515052935 28.889661376759197 38.786056817601164 12.95947329058671 14 14.513541677957203 32.345262851471226 39.663467121694715 13.477728348876855 15 13.913220536340564 23.113138160573904 49.69287155419226 13.28076974889327 16 16.733506652772206 18.739403023438385 48.946225037587816 15.580865286201595 17 16.30536944447455 18.61707810678191 39.86096766751159 25.216584781231948 18 18.68784074844268 21.70810487735766 42.422435938131464 17.1816184360682 19 22.420376543964966 22.963174006419734 37.91437565517381 16.702073794441493 20 23.370639852219114 21.888495419009292 37.61855065103179 17.122314077739805 21 20.278064664976828 23.5203717438733 39.73779112168852 16.46377246946135 22 18.515656815123695 20.70751802744104 38.87029068426081 21.906534473174453 23 16.481811523626515 25.48848674787596 38.46739266762772 19.562309060869808 24 16.734435702772128 23.090376435575802 44.56838659628597 15.6068012653661 25 17.595897315200343 22.138177606488483 42.34439573813797 17.921529340173205 26 15.268085119560993 26.408401089465965 38.923711059256355 19.399802731716683 27 15.874832190343763 26.61681797278193 40.621704775781524 16.886645061092782 28 14.097946644658505 24.315328860473723 45.07975120041002 16.50697329445775 29 15.082042857076496 23.759447277186712 43.41218387138232 17.74632599435447 30 17.254935965228754 24.49889365629176 41.98129202983489 16.264878348644594 31 23.53004934803916 23.009781348082516 36.52087807612326 16.93929122775506 32 23.219824068898347 24.22226901881481 36.7928574636006 15.765049448686247 33 21.86674016484444 24.117208947990232 35.16647801790279 18.849572869262534 34 17.52490241103959 25.253591939562202 36.01655876783195 21.204946881566254 35 17.90929684850756 25.465183077044568 35.864349409511306 20.761170664936568 36 24.94383118542135 25.154415852070468 32.458916634795095 17.442836327713096 37 18.518831069290098 29.34195388505484 33.01046265141579 19.12875239423927 38 19.170327381735806 30.806523789099455 30.80590442243284 19.217244406731897 39 19.414899794215426 26.973263489418898 32.15751733065354 21.45431938571214 40 20.969974652419168 24.55270113545394 33.74379278468801 20.733531427438873 41 17.502295527708142 24.152899952153923 34.1411939221549 24.203610597983033 42 20.20095351498325 25.56443658536963 31.07176756407735 23.162842335569763 43 19.90628982334114 24.865403881261216 31.72326387652306 23.50504241887458 44 18.69449894010879 27.106504743574455 33.25534474722872 20.94365156908803 45 18.424842177631263 30.401845093299844 30.256603609978615 20.916709119090275 46 20.84749489409604 27.748865397687595 31.834672455680447 19.56896725253592 47 19.934548427505455 26.006277281166145 32.5456279681212 21.513546323207205 48 19.80804278584933 26.414672176965443 33.62464212219795 20.15264291498728 49 19.881205473343233 24.848758402095935 34.728740626272604 20.541295498288225 50 17.8584313610118 28.056148685161986 33.14563942640453 20.939780527421682 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 695.0 1 1331.5 2 1968.0 3 29089.5 4 56211.0 5 38475.0 6 20739.0 7 20498.5 8 20258.0 9 20851.5 10 21445.0 11 21315.5 12 21186.0 13 20191.5 14 19197.0 15 18057.5 16 16918.0 17 15719.0 18 14520.0 19 13778.5 20 13037.0 21 12168.5 22 11300.0 23 11743.0 24 12186.0 25 12811.0 26 13436.0 27 14493.5 28 15551.0 29 17598.0 30 19645.0 31 21293.0 32 22941.0 33 26475.5 34 30010.0 35 34354.5 36 38699.0 37 41750.5 38 44802.0 39 51440.5 40 58079.0 41 68978.0 42 79877.0 43 93851.0 44 107825.0 45 108561.5 46 109298.0 47 106809.0 48 104320.0 49 99933.5 50 95547.0 51 86370.5 52 77194.0 53 66570.5 54 55947.0 55 51758.0 56 47569.0 57 43278.0 58 38987.0 59 34820.5 60 30654.0 61 27570.5 62 24487.0 63 20255.5 64 16024.0 65 13221.5 66 10419.0 67 8637.0 68 6855.0 69 5780.5 70 4706.0 71 4212.5 72 3719.0 73 3087.5 74 2456.0 75 1942.5 76 1429.0 77 1141.0 78 853.0 79 590.0 80 327.0 81 240.0 82 153.0 83 122.5 84 92.0 85 63.0 86 34.0 87 27.0 88 20.0 89 17.0 90 14.0 91 10.5 92 7.0 93 6.0 94 5.0 95 2.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1291642.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.21644776141609 #Duplication Level Percentage of deduplicated Percentage of total 1 78.99449205194078 23.079384504751264 2 7.02480030746953 4.104794224351264 3 2.985760345884913 2.616999335209626 4 1.7311973240988054 2.023177447369443 5 1.214874702223886 1.7747161637095048 6 0.9058930175485921 1.5880185614784017 7 0.6858602162240709 1.4026879425260879 8 0.572606209694733 1.3383615530726907 9 0.4501043928916161 1.1835406333891625 >10 4.286603605091168 27.765317515624606 >50 0.8657189727996402 17.68740950528436 >100 0.27729414273234065 11.274695765960589 >500 0.0026637285554990554 0.4693606824259452 >1k 0.0018646099888493385 0.8148244644337002 >5k 0.0 0.0 >10k+ 2.663728555499055E-4 2.876711700413304 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36964 2.8617836830948513 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1803 0.13958976248836752 No Hit GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT 1689 0.13076378748910303 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1661 0.12859600415595032 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC 1658 0.1283637416559697 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1382 0.10699559165775036 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.548416666537632E-4 0.0 0.0 0.04536860832955262 0.0 2 1.548416666537632E-4 0.0 0.0 0.18457126665128573 0.0 3 1.548416666537632E-4 0.0 0.0 0.24310141664640822 0.0 4 2.3226249998064478E-4 0.0 0.0 0.39445914580046176 0.0 5 2.3226249998064478E-4 0.0 0.0 0.7572531707702289 0.0 6 2.3226249998064478E-4 0.0 0.0 0.9920705582506608 0.0 7 2.3226249998064478E-4 0.0 0.0 1.1589124540700906 0.0 8 2.3226249998064478E-4 0.0 0.0 1.5068416790410966 0.0 9 2.3226249998064478E-4 0.0 0.0 1.6450378665295802 0.0 10 2.3226249998064478E-4 0.0 0.0 2.006670578999444 0.0 11 3.096833333075264E-4 0.0 0.0 2.2383911331468007 0.0 12 3.096833333075264E-4 0.0 0.0 2.5300354122891635 0.0 13 3.8710416663440797E-4 0.0 0.0 2.632540595613955 0.0 14 3.8710416663440797E-4 0.0 0.0 2.6738058997771827 0.0 15 3.8710416663440797E-4 0.0 0.0 2.739768449771686 0.0 16 3.8710416663440797E-4 0.0 0.0 2.846376937262802 0.0 17 4.6452499996128957E-4 0.0 0.0 2.985734437251189 0.0 18 4.6452499996128957E-4 0.0 0.0 3.1908996455674252 0.0 19 5.419458332881712E-4 0.0 0.0 3.2854304830595473 0.0 20 6.967874999419343E-4 0.0 0.0 3.3853807788845516 0.0 21 8.516291665956975E-4 0.0 0.0 3.4991894038750675 0.0 22 8.516291665956975E-4 0.0 0.0 3.6228304746980973 0.0 23 8.516291665956975E-4 0.0 0.0 3.748174803854319 0.0 24 8.516291665956975E-4 0.0 0.0 3.8531574538455704 0.0 25 8.516291665956975E-4 0.0 0.0 3.9353783788387187 0.0 26 8.516291665956975E-4 0.0 0.0 4.020309032998307 0.0 27 8.516291665956975E-4 0.0 0.0 4.1122849829906425 0.0 28 8.516291665956975E-4 0.0 0.0 4.209602970482533 0.0 29 9.290499999225791E-4 0.0 0.0 4.317992137140167 0.0 30 9.290499999225791E-4 0.0 0.0 4.45696253296192 0.0 31 9.290499999225791E-4 0.0 0.0 4.57340346628555 0.0 32 9.290499999225791E-4 0.0 0.0 4.680708741276607 0.0 33 9.290499999225791E-4 0.0 0.0 4.798310987100141 0.0 34 9.290499999225791E-4 0.0 0.0 4.919939116256672 0.0 35 9.290499999225791E-4 0.0 0.0 5.072303316243975 0.0 36 9.290499999225791E-4 0.0 0.0 5.183711895401357 0.0 37 9.290499999225791E-4 0.0 0.0 5.2992237787250644 0.0 38 9.290499999225791E-4 0.0 0.0 5.437342545380221 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 145 0.0 44.000004 25 CGAGTTA 20 7.8568433E-4 44.000004 15 TCGATAG 40 8.314601E-9 44.000004 1 TAGCACG 20 7.8568433E-4 44.000004 1 CTACGGT 40 8.314601E-9 44.000004 40 CCGAACG 20 7.8568433E-4 44.000004 37 ATCGAGT 20 7.8568433E-4 44.000004 25 ACGCCCG 30 2.5279624E-6 44.0 29 CGACGGT 140 0.0 44.0 28 CGCATTA 25 4.443147E-5 44.0 31 TATTCCG 30 2.5279624E-6 44.0 1 TGTTACG 30 2.5279624E-6 44.0 1 GTCCGAA 30 2.5279624E-6 44.0 35 CGTAATC 60 0.0 44.0 22 ACGTACT 25 4.443147E-5 44.0 29 CGTTTTT 22580 0.0 43.44464 1 CGGTCTA 150 0.0 41.066666 31 TGTACGG 125 0.0 40.48 2 TCGCGCA 180 0.0 40.333332 34 CGTAAGG 235 0.0 40.255318 2 >>END_MODULE