SRR1546112_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546112_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1286513
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37939	2.948979139736637	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	1737	0.13501612498280233	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1727	0.13423883007789272	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1710	0.13291742873954634	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC	1641	0.1275540938956699	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1434	0.11146408936404063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGT	20	7.856832E-4	44.0	29
TACGACT	20	7.856832E-4	44.0	37
ACGTAAG	55	1.8189894E-12	44.0	1
CGTTTTT	21610	0.0	43.31791	1
CGGTCTA	180	0.0	41.555553	31
CGTAATC	65	0.0	40.615383	22
TCACGAC	180	0.0	40.333332	25
CGACGGT	180	0.0	40.333332	28
TAGCCGT	55	7.8216544E-11	40.0	44
TCGCGCA	165	0.0	40.0	34
GTTTTTT	24290	0.0	39.290245	2
CGGGCTA	45	2.3512257E-8	39.111107	6
GCGTAAG	45	2.3512257E-8	39.111107	1
GCGCGAC	410	0.0	38.634148	9
ATCACGG	40	4.1250496E-7	38.5	2
TGGTACG	40	4.1250496E-7	38.5	1
ACCCGCT	390	0.0	38.35898	34
GACGGTC	190	0.0	38.210526	29
CGTTAGG	185	0.0	38.054054	2
CTAAGCG	35	7.290886E-6	37.714287	1