SRR1546111_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546111_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1268641
Sequences flagged as poor quality	0
Sequence length	50
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37714	2.9727874158252807	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	1760	0.13873113039859186	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1752	0.13810053435132555	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC	1638	0.1291145406777804	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1608	0.12674980550053166	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1443	0.11374376202566369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGC	20	7.8567903E-4	44.000004	36
CGACAGT	20	7.8567903E-4	44.000004	44
CCGTATG	20	7.8567903E-4	44.000004	1
CGCTACG	20	7.8567903E-4	44.000004	12
TGTTACG	20	7.8567903E-4	44.000004	1
TCGTAAG	20	7.8567903E-4	44.000004	1
ACCCGTA	20	7.8567903E-4	44.000004	37
ACGTAAG	65	0.0	44.000004	1
GTACGAC	30	2.5279242E-6	44.000004	26
TTCGTAC	45	4.802132E-10	44.0	33
TCGTACA	45	4.802132E-10	44.0	34
CGTTTTT	21740	0.0	43.311867	1
TCACGAC	120	0.0	42.16667	25
CGACGGT	120	0.0	42.16667	28
CGGTCTA	120	0.0	42.16667	31
TCGTAAT	75	0.0	41.066666	21
TCGCTAT	70	0.0	40.857143	23
CGTAATC	70	0.0	40.857143	22
CGTACAT	50	1.3478711E-9	39.6	35
AACACGT	100	0.0	39.6	41