##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546106_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 524101 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.08650622685322 28.0 25.0 30.0 16.0 33.0 2 26.272531439550775 30.0 25.0 31.0 10.0 33.0 3 26.524784345002203 30.0 25.0 31.0 16.0 33.0 4 27.821416101095018 32.0 19.0 35.0 10.0 37.0 5 31.358034043056588 33.0 30.0 35.0 19.0 37.0 6 29.937315517428893 33.0 28.0 35.0 17.0 36.0 7 29.87835359978325 32.0 28.0 35.0 17.0 35.0 8 32.45534734717163 33.0 32.0 35.0 28.0 35.0 9 27.1874257061139 31.0 23.0 34.0 10.0 35.0 10 31.422824989839743 34.0 29.0 37.0 17.0 39.0 11 33.636966920498146 35.0 32.0 37.0 27.0 39.0 12 33.116401228007575 35.0 31.0 38.0 24.0 39.0 13 33.098956117236945 35.0 31.0 38.0 23.0 39.0 14 32.872404364807544 35.0 31.0 39.0 21.0 40.0 15 31.914386730801887 34.0 27.0 38.0 18.0 40.0 16 30.587688250928732 34.0 27.0 38.0 17.0 40.0 17 30.510586699891814 32.0 26.0 38.0 17.0 40.0 18 31.518634766962858 34.0 28.0 38.0 18.0 39.0 19 31.213914875186273 34.0 27.0 37.0 18.0 39.0 20 31.583423805716837 34.0 29.0 36.0 19.0 39.0 21 32.53127927632269 34.0 31.0 37.0 23.0 39.0 22 32.81255139753597 34.0 31.0 37.0 25.0 39.0 23 34.131058708149766 35.0 33.0 38.0 28.0 39.0 24 33.764083640367026 35.0 33.0 38.0 26.0 40.0 25 32.66154806039294 35.0 31.0 37.0 23.0 39.0 26 26.223485549541024 33.0 19.0 36.0 0.0 39.0 27 29.487327824217086 33.0 23.0 37.0 12.0 39.0 28 30.96816644120122 34.0 27.0 36.0 18.0 39.0 29 32.26559575349026 34.0 30.0 37.0 23.0 39.0 30 32.020507497600654 34.0 30.0 37.0 21.0 39.0 31 30.914394362918596 34.0 29.0 36.0 18.0 39.0 32 31.06806321682271 34.0 29.0 37.0 18.0 39.0 33 30.626720803814532 34.0 29.0 37.0 16.0 38.0 34 30.52367387202085 34.0 29.0 37.0 14.0 39.0 35 29.60410493397265 33.0 26.0 37.0 10.0 39.0 36 29.347948200823886 33.0 25.0 37.0 10.0 39.0 37 29.44905848300232 33.0 25.0 37.0 9.0 39.0 38 29.19582103449526 33.0 25.0 36.0 9.0 38.0 39 29.147475391193684 33.0 24.0 36.0 9.0 39.0 40 29.0226483063379 33.0 24.0 36.0 9.0 38.0 41 28.42599995039124 33.0 23.0 36.0 8.0 38.0 42 28.62905813955707 33.0 23.0 36.0 8.0 38.0 43 28.2074695526244 32.0 23.0 35.0 8.0 38.0 44 27.8871496142919 32.0 23.0 35.0 8.0 38.0 45 27.289356440838695 31.0 23.0 35.0 8.0 38.0 46 26.83566717102238 31.0 21.0 34.0 7.0 38.0 47 26.927368961326156 31.0 22.0 34.0 7.0 37.0 48 27.065678180350734 31.0 22.0 34.0 7.0 37.0 49 26.922938517575812 31.0 22.0 34.0 7.0 37.0 50 28.65352288967203 33.0 24.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 17.0 12 30.0 13 76.0 14 226.0 15 438.0 16 912.0 17 1708.0 18 2730.0 19 4420.0 20 6355.0 21 8868.0 22 11769.0 23 15356.0 24 19928.0 25 24379.0 26 27824.0 27 30227.0 28 32679.0 29 36929.0 30 43976.0 31 50832.0 32 54816.0 33 53020.0 34 44824.0 35 33045.0 36 15572.0 37 3050.0 38 90.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.853608369379184 22.30676911511331 26.268410096527194 27.571212418980313 2 40.23613769101757 16.510558079454153 29.565484515389212 13.687819714139069 3 28.163846281537335 13.677897962415642 44.342025678256675 13.816230077790351 4 25.94671637718684 22.794461372903317 37.44182896044846 13.816993289461383 5 17.33310945790983 28.193039127954343 40.78526848832572 13.688582925810103 6 17.12017340169166 33.58226754003522 39.24911419745431 10.048444860818812 7 75.1221615680947 3.416707848296416 19.830147242611634 1.6309833409972507 8 77.30532855308422 1.9812974980013394 18.95378944134814 1.75958450756629 9 65.49901641095896 2.758628584948321 18.814694114302398 12.927660889790326 10 43.88963196025193 19.283878489069856 26.110043674787875 10.716445875890335 11 38.391645885048874 18.44491805968697 30.123964655667514 13.039471399596641 12 33.96425498138718 17.897504488638642 35.990391165061695 12.147849364912489 13 19.01866243338593 32.06099587674895 35.68358007330648 13.23676161655864 14 13.170934609932056 35.30407306988538 38.11345523095739 13.411537089225167 15 11.192117549861573 19.690670309730375 51.788491149606664 17.32872099080139 16 13.052064392168687 13.625808765867648 52.287631582462154 21.034495259501508 17 14.755552841914058 15.120749626503288 38.66182281659451 31.46187471498814 18 18.26708974033631 20.741421977824885 43.21838729557852 17.773100986260282 19 25.251812150711412 21.996332767920688 35.18062358209582 17.571231499272084 20 26.135802068685233 19.953024321647927 34.73967803915657 19.171495570510263 21 20.093264466200218 23.086580639991148 38.584547634902435 18.235607258906203 22 18.875751047985027 19.571800091967006 35.50231730143618 26.050131558611795 23 16.457705671235125 25.990601048271227 35.51014022106426 22.041553059429383 24 16.410958956384363 21.034113653665994 47.160375576463316 15.394551813486332 25 17.42622128177584 19.190766665203846 44.120312687821624 19.262699365198692 26 12.230657831219554 38.89670120835488 30.67462187631773 18.198019084107834 27 14.326437079875825 28.25447766747249 39.735470834820006 17.683614417831677 28 13.032030085804072 23.914856105979574 46.99685747594452 16.056256332271836 29 14.350859853348878 21.590304158931197 44.990183189881336 19.068652797838585 30 16.98642055634315 24.639907193460804 41.98847168770905 16.385200562487 31 26.859326732824396 22.190379335280795 33.97971001772559 16.970583914169215 32 26.404643379806565 21.77442897456788 34.74196767416967 17.078959971455884 33 24.41075288923318 22.279102692038364 33.27373922202018 20.03640519670827 34 17.798286971404366 23.446434942883148 34.40291088931332 24.352367196399165 35 18.336160396564786 22.220144590451078 36.619086779075026 22.824608233909114 36 27.67405519165199 22.593927506339426 30.870194867019908 18.861822434988675 37 18.15451601885896 29.295879992596845 32.077404927676156 20.47219906086804 38 19.38290520338637 30.771549758538907 28.642379999274947 21.203165038799774 39 18.585539810074774 27.20906848107521 30.785096765699745 23.42029494315027 40 21.872120068460088 22.848076992793374 32.222033539336884 23.057769399409654 41 17.081058803551226 21.327759344095888 33.251033674806955 28.34014817754593 42 20.382903295357195 23.473338154287056 27.711452563532603 28.432305986823152 43 20.252012493775055 22.713751738691588 29.76773560821292 27.266500159320433 44 18.232172806386554 26.230821921728825 32.4256202525849 23.111385019299714 45 18.14497587297105 32.65114930137511 27.289205706533664 21.91466911912017 46 21.346458030036196 27.53801271129038 29.33423137906625 21.781297879607177 47 21.080097156845724 24.751145294513844 29.5815119604809 24.587245588159533 48 19.263271773951967 23.999954207299737 34.16345322752676 22.57332079122154 49 19.382141991715336 23.355612754030233 34.05736680525319 23.204878449001242 50 18.534213825197813 27.878977525324316 32.68358579739402 20.903222852083854 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 289.0 1 506.5 2 724.0 3 6751.0 4 12778.0 5 9982.0 6 7186.0 7 7322.5 8 7459.0 9 7876.0 10 8293.0 11 8696.0 12 9099.0 13 9041.0 14 8983.0 15 8557.0 16 8131.0 17 7604.0 18 7077.0 19 6687.0 20 6297.0 21 5809.0 22 5321.0 23 5152.0 24 4983.0 25 4624.5 26 4266.0 27 4465.5 28 4665.0 29 4936.5 30 5208.0 31 6031.0 32 6854.0 33 8181.0 34 9508.0 35 10529.0 36 11550.0 37 12225.0 38 12900.0 39 16118.0 40 19336.0 41 24799.0 42 30262.0 43 36833.0 44 43404.0 45 43908.5 46 44413.0 47 43831.0 48 43249.0 49 42556.5 50 41864.0 51 38608.5 52 35353.0 53 31481.5 54 27610.0 55 25038.0 56 22466.0 57 20266.0 58 18066.0 59 16548.5 60 15031.0 61 13420.5 62 11810.0 63 10510.0 64 9210.0 65 7912.5 66 6615.0 67 5735.5 68 4856.0 69 4052.5 70 3249.0 71 2827.5 72 2406.0 73 2011.5 74 1617.0 75 1199.5 76 782.0 77 628.0 78 474.0 79 338.0 80 202.0 81 162.5 82 123.0 83 95.0 84 67.0 85 49.0 86 31.0 87 25.5 88 20.0 89 13.0 90 6.0 91 4.5 92 3.0 93 3.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 524101.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.77863458875695 #Duplication Level Percentage of deduplicated Percentage of total 1 84.37572390847508 40.313568807848746 2 6.345906975266644 6.063975410110178 3 2.326070660166163 3.3340944029912336 4 1.3127310122484943 2.5088198139019937 5 0.844264130740175 2.016889369951468 6 0.604643095840481 1.733341291966626 7 0.4598637020917389 1.5380161848011926 8 0.3250855351988456 1.2425714397084904 9 0.30442010028938504 1.3090299059879347 >10 2.821554748937032 28.532949593691182 >50 0.2523280806109082 7.706416633724167 >100 0.026102904890566745 1.859101560932131 >500 8.700968296855582E-4 0.2271911903062186 >1k 0.0 0.0 >5k 4.350484148427791E-4 1.6140343940784883 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7765 1.4815846563925654 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 566 0.10799445145115158 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 527 0.10055313765858108 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03911459814043476 0.0 2 0.0 0.0 0.0 0.1570308013150137 0.0 3 0.0 0.0 0.0 0.19996145781061284 0.0 4 0.0 0.0 0.0 0.26025517982220986 0.0 5 0.0 0.0 0.0 0.41823999572601467 0.0 6 0.0 0.0 0.0 0.5498940089791853 0.0 7 0.0 0.0 0.0 0.6288864169310877 0.0 8 0.0 0.0 0.0 0.8536522540502689 0.0 9 0.0 0.0 0.0 0.9872142964810218 0.0 10 0.0 0.0 0.0 1.2301064107872337 0.0 11 0.0 0.0 0.0 1.44685852536057 0.0 12 0.0 0.0 0.0 1.6353718081056896 0.0 13 0.0 0.0 0.0 1.712646989797768 0.0 14 0.0 0.0 0.0 1.7357341428465125 0.0 15 0.0 0.0 0.0 1.7687430476186843 0.0 16 0.0 0.0 0.0 1.8521239226790256 0.0 17 0.0 0.0 0.0 1.968513702511539 0.0 18 0.0 0.0 0.0 2.143289175178067 0.0 19 0.0 0.0 0.0 2.203010488436389 0.0 20 0.0 0.0 0.0 2.2682650863097 0.0 21 0.0 0.0 0.0 2.3396253775512736 0.0 22 0.0 0.0 0.0 2.4149925300657697 0.0 23 0.0 0.0 0.0 2.497991799290595 0.0 24 0.0 0.0 0.0 2.5596211417264993 0.0 25 0.0 0.0 0.0 2.6046506303174386 0.0 26 0.0 0.0 0.0 2.6525421626747514 0.0 27 0.0 0.0 0.0 2.717605957630304 0.0 28 0.0 0.0 0.0 2.789347854707394 0.0 29 0.0 0.0 0.0 2.8776896056294494 0.0 30 0.0 0.0 0.0 2.970992232413218 0.0 31 0.0 0.0 0.0 3.0558995308156254 0.0 32 0.0 0.0 0.0 3.135273544603044 0.0 33 0.0 0.0 0.0 3.2203716459232092 0.0 34 0.0 0.0 0.0 3.3033709151480344 0.0 35 0.0 0.0 0.0 3.4327352933881063 0.0 36 0.0 0.0 0.0 3.517070183037239 0.0 37 0.0 0.0 0.0 3.600069452262064 0.0 38 0.0 0.0 0.0 3.690891641114976 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGTA 20 7.852555E-4 44.000004 30 ACACACG 20 7.852555E-4 44.000004 28 ACGTCTT 20 7.852555E-4 44.000004 31 CACCGTG 20 7.852555E-4 44.000004 18 TACGTTG 20 7.852555E-4 44.000004 1 TACCGAA 20 7.852555E-4 44.000004 18 CCGATGT 25 4.4395158E-5 44.0 11 CTATCGA 25 4.4395158E-5 44.0 38 GGCCGTA 30 2.525072E-6 44.0 8 ACGGGAC 105 0.0 44.0 5 ATCGTAG 25 4.4395158E-5 44.0 1 CGGGATA 25 4.4395158E-5 44.0 6 TAGGACG 25 4.4395158E-5 44.0 1 ACGGGTA 45 4.783942E-10 43.999996 5 CGTTTTT 8345 0.0 43.34092 1 GCTTAAA 130 0.0 42.30769 22 CGTCTTT 105 0.0 41.904762 1 GACGGTC 90 0.0 41.555553 29 CGGTCTA 90 0.0 41.555553 31 CTAGGGT 85 0.0 41.411766 4 >>END_MODULE