##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546105_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 445533 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.10031580152312 31.0 28.0 33.0 25.0 33.0 2 28.856836642852493 31.0 28.0 33.0 16.0 33.0 3 28.373738870072476 31.0 28.0 33.0 16.0 34.0 4 31.99466257269383 35.0 32.0 35.0 25.0 37.0 5 33.66848920281999 35.0 33.0 35.0 28.0 37.0 6 33.5137015664384 35.0 33.0 37.0 28.0 37.0 7 34.17461781731095 35.0 33.0 37.0 30.0 37.0 8 34.69725699330914 35.0 35.0 37.0 32.0 37.0 9 36.51308208370648 39.0 37.0 39.0 32.0 39.0 10 36.290158080321774 38.0 35.0 39.0 31.0 39.0 11 36.37811116123834 39.0 35.0 39.0 32.0 39.0 12 35.215357784945226 37.0 34.0 39.0 30.0 39.0 13 35.21360931737941 37.0 34.0 39.0 27.0 39.0 14 36.03030303030303 38.0 34.0 40.0 29.0 41.0 15 36.64702502396007 38.0 35.0 40.0 31.0 41.0 16 36.310062329838644 38.0 34.0 40.0 31.0 41.0 17 35.82304116642314 37.0 34.0 40.0 30.0 41.0 18 35.44558539995915 37.0 34.0 39.0 29.0 40.0 19 34.84551537147641 37.0 33.0 39.0 27.0 40.0 20 35.117744364614964 35.0 34.0 39.0 30.0 40.0 21 35.313420105805854 35.0 34.0 39.0 30.0 40.0 22 35.62981417762545 35.0 34.0 39.0 31.0 40.0 23 35.967100080128745 36.0 35.0 40.0 31.0 41.0 24 35.659286741947284 35.0 35.0 40.0 31.0 41.0 25 35.287305317451235 35.0 34.0 39.0 30.0 41.0 26 35.34020600045339 35.0 34.0 39.0 30.0 41.0 27 35.62232876128143 35.0 34.0 40.0 31.0 41.0 28 35.571569333809165 36.0 35.0 40.0 31.0 41.0 29 35.70643700915532 36.0 35.0 40.0 31.0 41.0 30 35.31571398751608 36.0 34.0 40.0 30.0 41.0 31 34.572289819160424 35.0 34.0 39.0 27.0 41.0 32 34.36292485629572 35.0 34.0 40.0 24.0 41.0 33 33.88103462594241 35.0 33.0 40.0 22.0 41.0 34 33.4201013168497 35.0 33.0 40.0 18.0 41.0 35 33.03226697012342 35.0 33.0 40.0 15.0 41.0 36 32.57186785266187 35.0 33.0 40.0 12.0 41.0 37 32.46229123319709 35.0 32.0 40.0 10.0 41.0 38 32.32504214053729 35.0 32.0 40.0 10.0 41.0 39 32.1417268754503 35.0 31.0 39.0 10.0 40.0 40 31.953516350079568 35.0 31.0 39.0 10.0 40.0 41 31.681861949619893 35.0 31.0 39.0 10.0 40.0 42 31.853945723436873 35.0 31.0 39.0 10.0 40.0 43 31.639602453690298 35.0 31.0 39.0 10.0 40.0 44 31.462428147858855 35.0 30.0 39.0 10.0 40.0 45 31.385580866063794 35.0 30.0 39.0 10.0 40.0 46 31.203192580572033 35.0 30.0 38.0 8.0 40.0 47 31.163307768448128 35.0 30.0 38.0 8.0 40.0 48 31.16350079567619 35.0 30.0 38.0 8.0 40.0 49 31.165498403036363 35.0 30.0 38.0 8.0 40.0 50 31.29867147888035 35.0 30.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 6.0 13 9.0 14 22.0 15 49.0 16 134.0 17 334.0 18 594.0 19 1022.0 20 1635.0 21 2432.0 22 3394.0 23 4777.0 24 7372.0 25 11135.0 26 15750.0 27 16949.0 28 15362.0 29 13981.0 30 14457.0 31 16816.0 32 22237.0 33 34120.0 34 55125.0 35 40235.0 36 39089.0 37 53975.0 38 60944.0 39 13575.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.72222484080865 21.694689282275387 25.777439606044894 26.80564627087107 2 41.25575434367376 19.78169967207816 27.14658622369162 11.815959760556458 3 26.252600817447863 17.499713825911886 43.531904482945144 12.7157808736951 4 24.020891830683695 22.694615213687875 40.094224221325916 13.19026873430251 5 18.303021325019696 27.560472512698276 40.562876375038435 13.573629787243593 6 17.17111863767667 34.786873250690746 38.08068089232447 9.96132721930811 7 72.13158172346381 4.313709646647947 21.158028698210906 2.396679931677339 8 73.04307425039222 3.3952591614986996 20.749529215568767 2.8121373725403056 9 69.75465341512302 5.008158767139583 21.530840588688154 3.706347229049251 10 39.59437348075227 25.390487348860802 25.754545678995722 9.26059349139121 11 36.17083358583989 17.632812833168362 33.88278758251353 12.313565998478229 12 32.808793063589 18.63161651325491 36.507733433887054 12.051856989269034 13 18.060839488881854 33.185420608574454 37.124298312358455 11.629441590185237 14 13.531208687123064 36.100131752305664 37.21295616710771 13.155703393463558 15 11.583429285821701 22.161321383601216 53.078447612185855 13.176801718391228 16 14.26134539977959 16.52627302579158 52.575679018164756 16.636702556264073 17 14.165729586809505 17.127350835965014 38.75762289213145 29.949296685094033 18 17.638872990328437 21.496275247849205 42.94317143735705 17.921680324465303 19 22.658029820462232 22.342901648138298 36.845531082994974 18.153537448404496 20 25.700004264555037 20.422056278659493 35.78141237573872 18.096527081046744 21 20.278632559204368 24.447571784806062 38.07866083993778 17.195134816051784 22 18.907914789701323 20.33182727205392 36.084420233742506 24.67583770450225 23 16.13887186807711 26.746615851126627 36.16881353345319 20.94569874734307 24 16.64904732084941 22.03136468005737 46.37232258889914 14.947265410194083 25 16.57722323598925 21.68548682140268 43.84187029916976 17.89541964343831 26 14.76321619273993 28.34537509006067 37.70382889707384 19.18757982012556 27 14.698574516365792 29.20008169989653 39.95169830293154 16.149645480806136 28 13.184881927937997 24.24938220064507 47.08248322795394 15.483252643462997 29 13.431328319114408 21.926770856479767 45.08038686247708 19.561513961928746 30 16.146278726828317 25.628853530490446 42.24804896606985 15.976818776611385 31 25.191399963639054 23.225664541122658 34.894160477450605 16.688775017787684 32 24.894676713060537 23.538997111325084 34.89640498010249 16.66992119551189 33 23.052613386662717 23.398491245317405 34.06571454864174 19.483180819378138 34 17.28738387504405 24.699629432612173 34.53773345633208 23.4752532360117 35 17.76815634307672 23.047002130033018 36.90074584823122 22.284095678659043 36 27.019996274125596 23.22521564059228 32.43014546621687 17.32464261906525 37 18.32928200604669 28.356822053585258 33.82196156064759 19.49193437972047 38 18.700971645198 30.624218632514317 30.194620824944508 20.480188897343183 39 18.90903704102726 27.826446076946038 31.76711938285155 21.497397499175143 40 21.155784195559026 24.51176456064983 32.70150583682915 21.630945406962 41 16.41337454240202 23.196934907178594 34.17143062354528 26.218259926874104 42 20.183016746234287 24.96223624288212 29.42206301216745 25.432683998716143 43 20.005476586470586 23.787239104623 30.64823481088943 25.559049498016982 44 18.015500535313883 26.694318939337826 32.94503437455811 22.34514615079018 45 17.873423517449886 32.14329802730662 28.144267652452232 21.839010802791265 46 21.686833522993805 28.89729829215793 29.494784898088355 19.921083286759902 47 20.514305337651756 25.393180752043058 30.66282407812665 23.42968983217854 48 19.713242341195826 24.69671157916473 33.622874175425835 21.967171904213608 49 19.061663221355097 24.312228274897706 34.835130057706166 21.790978446041034 50 18.40222834223279 27.79524749008491 32.68848772144825 21.11403644623406 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 229.0 1 382.5 2 536.0 3 7496.5 4 14457.0 5 10601.5 6 6746.0 7 6872.5 8 6999.0 9 7374.0 10 7749.0 11 7809.0 12 7869.0 13 7564.5 14 7260.0 15 6872.5 16 6485.0 17 6004.5 18 5524.0 19 5003.0 20 4482.0 21 4374.5 22 4267.0 23 3762.0 24 3257.0 25 3336.0 26 3415.0 27 3730.5 28 4046.0 29 4299.0 30 4552.0 31 5462.5 32 6373.0 33 7695.0 34 9017.0 35 9845.0 36 10673.0 37 11968.5 38 13264.0 39 16105.0 40 18946.0 41 25555.5 42 32165.0 43 35832.5 44 39500.0 45 41932.0 46 44364.0 47 42526.0 48 40688.0 49 39213.5 50 37739.0 51 32714.0 52 27689.0 53 24037.5 54 20386.0 55 17906.0 56 15426.0 57 13941.0 58 12456.0 59 10430.5 60 8405.0 61 7512.0 62 6619.0 63 5535.5 64 4452.0 65 3750.0 66 3048.0 67 2595.0 68 2142.0 69 1875.0 70 1608.0 71 1389.0 72 1170.0 73 1002.5 74 835.0 75 583.5 76 332.0 77 242.5 78 153.0 79 147.5 80 142.0 81 87.5 82 33.0 83 21.5 84 10.0 85 9.5 86 9.0 87 7.5 88 6.0 89 5.5 90 5.0 91 5.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 445533.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.480002986017006 #Duplication Level Percentage of deduplicated Percentage of total 1 78.61948493071485 27.89419560100882 2 7.7355690722572366 5.489160275644552 3 3.3544327745854243 3.570458545760525 4 2.0056541546727575 2.8464246158682744 5 1.2735367350744173 2.2592543581621336 6 0.8639316587807896 1.8391378699954224 7 0.6239538960566101 1.5496520266657827 8 0.49659305779158214 1.4095298538624519 9 0.3821219784996848 1.2201920044372387 >10 3.9607660469968087 31.271889294235617 >50 0.626959386689025 14.840915214413124 >100 0.054463138641672876 3.0580598950516675 >500 0.0018998769293606813 0.4615176358880327 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 6.332923097868939E-4 2.289612809006355 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10190 2.287148202265601 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 720 0.16160419093535158 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 715 0.16048193960941165 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 619 0.13893471415136477 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 468 0.10504272410797853 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCC 468 0.10504272410797853 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05970377054000489 0.0 2 0.0 0.0 0.0 0.24375298799415532 0.0 3 0.0 0.0 0.0 0.32724848664408696 0.0 4 0.0 0.0 0.0 0.49738178765658214 0.0 5 0.0 0.0 0.0 0.922266139657444 0.0 6 0.0 0.0 0.0 1.212929233075889 0.0 7 0.0 0.0 0.0 1.4086498643198146 0.0 8 0.0 0.0 0.0 1.84318557772376 0.0 9 2.2445026518798833E-4 0.0 0.0 1.979651338958057 0.0 10 2.2445026518798833E-4 0.0 0.0 2.3342827579550787 0.0 11 2.2445026518798833E-4 0.0 0.0 2.638412867284803 0.0 12 2.2445026518798833E-4 0.0 0.0 2.9528676888131744 0.0 13 2.2445026518798833E-4 0.0 0.0 3.0639705700812288 0.0 14 4.4890053037597666E-4 0.0 0.0 3.1012293141024347 0.0 15 4.4890053037597666E-4 0.0 0.0 3.1775424042663505 0.0 16 4.4890053037597666E-4 0.0 0.0 3.324557327964483 0.0 17 4.4890053037597666E-4 0.0 0.0 3.514891152843897 0.0 18 4.4890053037597666E-4 0.0 0.0 3.80241194254971 0.0 19 4.4890053037597666E-4 0.0 0.0 3.9184527296519 0.0 20 6.733507955639649E-4 0.0 0.0 4.0412270247097295 0.0 21 6.733507955639649E-4 0.0 0.0 4.2061979696229015 0.0 22 6.733507955639649E-4 0.0 0.0 4.383962579651788 0.0 23 6.733507955639649E-4 0.0 0.0 4.57788760877421 0.0 24 6.733507955639649E-4 0.0 0.0 4.713455568947754 0.0 25 6.733507955639649E-4 0.0 0.0 4.845432324878292 0.0 26 6.733507955639649E-4 0.0 0.0 4.9605753109197295 0.0 27 6.733507955639649E-4 0.0 0.0 5.087614161016131 0.0 28 6.733507955639649E-4 0.0 0.0 5.218693115885916 0.0 29 6.733507955639649E-4 0.0 0.0 5.352465473937958 0.0 30 6.733507955639649E-4 0.0 0.0 5.517660869116317 0.0 31 6.733507955639649E-4 0.0 0.0 5.691160924106632 0.0 32 6.733507955639649E-4 0.0 0.0 5.8366046959484486 0.0 33 6.733507955639649E-4 0.0 0.0 5.992822080519288 0.0 34 6.733507955639649E-4 0.0 0.0 6.14095925554336 0.0 35 6.733507955639649E-4 0.0 0.0 6.367429573118041 0.0 36 6.733507955639649E-4 0.0 0.0 6.5157911984073005 0.0 37 6.733507955639649E-4 0.0 0.0 6.671335232182577 0.0 38 6.733507955639649E-4 0.0 0.0 6.821941360123717 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAG 30 2.5242134E-6 44.000004 1 TGAATAG 30 2.5242134E-6 44.000004 1 TAATACC 25 4.438437E-5 44.0 10 CGGAAAG 25 4.438437E-5 44.0 13 TAGACTT 20 7.8512856E-4 44.0 27 GCGCGAC 180 0.0 44.0 9 ATCCGTA 20 7.8512856E-4 44.0 13 TATTGCG 25 4.438437E-5 44.0 1 TCGGATG 20 7.8512856E-4 44.0 41 CCGTAGT 20 7.8512856E-4 44.0 36 GTTAACG 20 7.8512856E-4 44.0 1 CATAGCG 25 4.438437E-5 44.0 19 CGGATAA 35 1.4434227E-7 44.0 21 ACGCTAG 20 7.8512856E-4 44.0 1 CGTAATG 20 7.8512856E-4 44.0 2 CGTAAGG 40 8.292773E-9 44.0 2 ACCGTAG 20 7.8512856E-4 44.0 35 ACGTAGG 70 0.0 44.0 2 TTGCACG 20 7.8512856E-4 44.0 1 GTAAGCG 20 7.8512856E-4 44.0 1 >>END_MODULE