##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546102_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 379000 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.14601055408971 28.0 25.0 30.0 16.0 33.0 2 26.271728232189975 30.0 25.0 31.0 10.0 33.0 3 26.64305277044855 30.0 25.0 31.0 16.0 33.0 4 27.493728232189973 32.0 19.0 35.0 10.0 35.0 5 31.27964907651715 33.0 30.0 35.0 19.0 35.0 6 29.96657519788918 33.0 28.0 35.0 17.0 36.0 7 30.059261213720315 32.0 28.0 35.0 17.0 35.0 8 32.56237994722955 35.0 32.0 35.0 28.0 35.0 9 27.25626649076517 31.0 23.0 34.0 10.0 37.0 10 31.954211081794195 35.0 31.0 37.0 18.0 39.0 11 33.883736147757254 35.0 32.0 39.0 27.0 39.0 12 33.346828496042214 35.0 31.0 39.0 25.0 39.0 13 33.15427176781002 35.0 31.0 39.0 22.0 39.0 14 32.98727440633245 35.0 31.0 39.0 21.0 40.0 15 31.994883905013193 34.0 27.0 38.0 18.0 40.0 16 30.701799472295516 34.0 27.0 38.0 17.0 40.0 17 30.699696569920846 33.0 27.0 38.0 17.0 40.0 18 31.685849604221637 34.0 29.0 38.0 18.0 39.0 19 31.317506596306067 34.0 28.0 37.0 18.0 39.0 20 31.724100263852243 34.0 30.0 36.0 19.0 39.0 21 32.57502638522428 34.0 31.0 37.0 23.0 39.0 22 32.851358839050135 34.0 31.0 37.0 25.0 39.0 23 34.11921635883905 35.0 33.0 38.0 28.0 39.0 24 33.76059102902374 35.0 33.0 38.0 26.0 40.0 25 32.616591029023745 35.0 31.0 37.0 23.0 39.0 26 26.07568073878628 33.0 18.0 35.0 0.0 38.0 27 29.394158311345645 33.0 23.0 36.0 12.0 39.0 28 30.920746701846966 34.0 27.0 36.0 18.0 39.0 29 32.216416886543534 34.0 30.0 37.0 23.0 39.0 30 31.99073878627968 34.0 30.0 37.0 21.0 39.0 31 30.878139841688654 33.0 29.0 36.0 18.0 38.0 32 31.00445646437995 34.0 29.0 37.0 18.0 39.0 33 30.56777308707124 34.0 29.0 36.0 15.0 38.0 34 30.410585751978893 34.0 29.0 37.0 12.0 39.0 35 29.460765171503958 33.0 26.0 37.0 9.0 39.0 36 29.10583377308707 33.0 24.0 36.0 8.0 39.0 37 29.168498680738786 33.0 24.0 37.0 8.0 39.0 38 28.93321899736148 33.0 24.0 36.0 8.0 38.0 39 28.851121372031663 33.0 24.0 36.0 8.0 39.0 40 28.737889182058048 33.0 23.0 36.0 8.0 38.0 41 28.173788918205805 33.0 23.0 35.0 8.0 38.0 42 28.399335092348284 33.0 23.0 36.0 8.0 38.0 43 27.992435356200527 32.0 23.0 35.0 7.0 38.0 44 27.716622691292876 32.0 23.0 35.0 7.0 38.0 45 27.109862796833774 31.0 22.0 35.0 7.0 38.0 46 26.67620844327177 31.0 20.0 35.0 7.0 38.0 47 26.79380474934037 31.0 21.0 34.0 7.0 37.0 48 26.8521635883905 31.0 21.0 34.0 7.0 37.0 49 26.70608179419525 31.0 20.0 34.0 7.0 37.0 50 28.467981530343007 33.0 23.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 4.0 12 21.0 13 55.0 14 135.0 15 291.0 16 631.0 17 1194.0 18 2005.0 19 3224.0 20 4706.0 21 6619.0 22 8862.0 23 11669.0 24 14801.0 25 18278.0 26 20777.0 27 21727.0 28 23051.0 29 26208.0 30 31281.0 31 36205.0 32 38848.0 33 38328.0 34 32078.0 35 23962.0 36 11714.0 37 2262.0 38 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.910817941952505 22.101583113456464 25.236675461741427 28.750923482849604 2 41.76965699208443 16.839313984168864 28.76490765171504 12.626121372031662 3 27.502902374670185 13.345646437994723 45.81978891820581 13.331662269129287 4 25.048548812664905 22.439050131926123 39.57915567282322 12.933245382585751 5 17.28126649076517 27.46622691292876 42.12691292875989 13.125593667546173 6 16.83456464379947 33.522163588390505 39.70369393139841 9.939577836411608 7 74.57730870712402 2.5179419525065962 21.574934036939315 1.3298153034300793 8 75.97493403693932 1.8551451187335093 20.693139841688655 1.4767810026385224 9 64.52928759894459 2.9013192612137204 19.948284960422164 12.621108179419524 10 40.807651715039576 25.048548812664905 26.15831134564644 7.985488126649076 11 37.832189973614774 16.362269129287597 34.5042216358839 11.30131926121372 12 33.799208443271766 18.06147757255937 37.183905013192614 10.955408970976253 13 17.41292875989446 34.15488126649077 37.64353562005277 10.788654353562006 14 12.450131926121372 36.74221635883905 38.36015831134565 12.447493403693931 15 9.979419525065964 20.217678100263853 53.91662269129288 15.886279683377309 16 12.407387862796835 14.260158311345647 53.472031662269124 19.86042216358839 17 13.20976253298153 15.827176781002638 39.931398416886545 31.03166226912929 18 16.988654353562005 20.702902374670185 44.789182058047494 17.519261213720316 19 23.328232189973615 21.24485488126649 38.12585751978892 17.301055408970974 20 26.11029023746702 19.529023746701846 36.901055408970976 17.45963060686016 21 19.900527704485487 24.026912928759895 39.135092348284964 16.937467018469658 22 18.29868073878628 19.576517150395777 36.855672823218995 25.269129287598947 23 15.326912928759896 26.864643799472294 37.20738786279683 20.601055408970975 24 15.492084432717679 21.245118733509237 49.24063324538259 14.022163588390502 25 15.839050131926122 20.035620052770447 46.47730870712401 17.64802110817942 26 11.332717678100265 40.58179419525066 31.604221635883906 16.48126649076517 27 13.46939313984169 30.18232189973615 41.10343007915567 15.24485488126649 28 12.062532981530342 23.920316622691292 49.258047493403694 14.759102902374671 29 12.340633245382586 21.245118733509237 47.22374670184696 19.190501319261212 30 15.194986807387863 25.652242744063326 43.68918205804749 15.46358839050132 31 26.032189973614777 22.461741424802113 35.747229551451184 15.758839050131925 32 25.427440633245386 22.591820580474934 35.76411609498681 16.216622691292876 33 23.61873350923483 22.62532981530343 34.61767810026385 19.138258575197888 34 16.49947229551451 23.866490765171505 35.11372031662269 24.520316622691293 35 17.491292875989444 22.22717678100264 37.60184696569921 22.679683377308706 36 27.554881266490767 22.469920844327177 32.497097625329815 17.47810026385224 37 17.511081794195253 28.833245382585755 33.518997361477574 20.136675461741422 38 17.866754617414248 31.60738786279683 30.17044854881267 20.355408970976253 39 18.19868073878628 27.96807387862797 31.77229551451187 22.06094986807388 40 21.078891820580477 23.72981530343008 32.92084432717678 22.270448548812666 41 15.630870712401054 22.16253298153034 34.61372031662269 27.592875989445908 42 19.253562005277043 24.05725593667546 28.735356200527708 27.95382585751979 43 19.261213720316622 22.893667546174143 30.693403693931398 27.151715039577834 44 17.092084432717677 26.144591029023744 33.48416886543536 23.27915567282322 45 17.23509234828496 33.27598944591029 27.43298153034301 22.05593667546174 46 20.603693931398418 28.740105540897098 29.293403693931396 21.362796833773086 47 19.95514511873351 24.56807387862797 30.030343007915565 25.446437994722952 48 18.788918205804748 24.16965699208443 34.51715039577836 22.524274406332452 49 18.58918205804749 24.216622691292876 34.46965699208444 22.724538258575198 50 17.68891820580475 28.503166226912928 32.57097625329815 21.23693931398417 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 121.0 1 226.5 2 332.0 3 4455.0 4 8578.0 5 7058.0 6 5538.0 7 5655.5 8 5773.0 9 6249.0 10 6725.0 11 7044.0 12 7363.0 13 7308.5 14 7254.0 15 7045.5 16 6837.0 17 6489.0 18 6141.0 19 5717.0 20 5293.0 21 5101.0 22 4909.0 23 4421.5 24 3934.0 25 3812.5 26 3691.0 27 3849.5 28 4008.0 29 4233.0 30 4458.0 31 5218.5 32 5979.0 33 6881.0 34 7783.0 35 8234.5 36 8686.0 37 9647.5 38 10609.0 39 12921.0 40 15233.0 41 20523.5 42 25814.0 43 29086.0 44 32358.0 45 34174.5 46 35991.0 47 34791.5 48 33592.0 49 32020.5 50 30449.0 51 26950.0 52 23451.0 53 20409.5 54 17368.0 55 15488.0 56 13608.0 57 12241.0 58 10874.0 59 9133.0 60 7392.0 61 6661.5 62 5931.0 63 4997.5 64 4064.0 65 3447.0 66 2830.0 67 2373.5 68 1917.0 69 1707.0 70 1497.0 71 1320.5 72 1144.0 73 959.5 74 775.0 75 555.5 76 336.0 77 253.5 78 171.0 79 142.5 80 114.0 81 79.5 82 45.0 83 27.0 84 9.0 85 10.0 86 11.0 87 8.5 88 6.0 89 4.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 379000.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.08362470283373 #Duplication Level Percentage of deduplicated Percentage of total 1 85.44539244924876 43.64860360463767 2 5.920580091073247 6.048893827909098 3 2.258720601211367 3.4615090650252136 4 1.2089806452310508 2.4703645421589107 5 0.7862254633172565 2.0081623249955154 6 0.561227730850361 1.7201728065349697 7 0.4524502275769348 1.6178958335576297 8 0.3729295415541402 1.5240474193081228 9 0.27331233217648204 1.2565606143203674 >10 2.483069858600411 26.261956258441543 >50 0.21702635767814654 6.907825642302566 >100 0.019526793107288252 1.5620840145829014 >500 0.0 0.0 >1k 0.0 0.0 >5k 5.5790837449395E-4 1.5119240462255596 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5305 1.3997361477572559 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 480 0.1266490765171504 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 430 0.11345646437994723 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03852242744063324 0.0 2 0.0 0.0 0.0 0.1604221635883905 0.0 3 0.0 0.0 0.0 0.21556728232189973 0.0 4 0.0 0.0 0.0 0.30395778364116094 0.0 5 0.0 0.0 0.0 0.5551451187335092 0.0 6 0.0 0.0 0.0 0.7108179419525066 0.0 7 0.0 0.0 0.0 0.8065963060686016 0.0 8 0.0 0.0 0.0 1.045382585751979 0.0 9 0.0 0.0 0.0 1.1488126649076518 0.0 10 0.0 0.0 0.0 1.3522427440633245 0.0 11 0.0 0.0 0.0 1.5630606860158311 0.0 12 0.0 0.0 0.0 1.7593667546174143 0.0 13 0.0 0.0 0.0 1.8461741424802112 0.0 14 0.0 0.0 0.0 1.8728232189973615 0.0 15 0.0 0.0 0.0 1.9105540897097626 0.0 16 0.0 0.0 0.0 1.99155672823219 0.0 17 0.0 0.0 0.0 2.1387862796833774 0.0 18 0.0 0.0 0.0 2.310817941952507 0.0 19 0.0 0.0 0.0 2.3844327176781004 0.0 20 0.0 0.0 0.0 2.4678100263852243 0.0 21 0.0 0.0 0.0 2.549868073878628 0.0 22 0.0 0.0 0.0 2.6485488126649077 0.0 23 0.0 0.0 0.0 2.758311345646438 0.0 24 0.0 0.0 0.0 2.8319261213720317 0.0 25 0.0 0.0 0.0 2.9108179419525064 0.0 26 0.0 0.0 0.0 2.978627968337731 0.0 27 0.0 0.0 0.0 3.062532981530343 0.0 28 0.0 0.0 0.0 3.1662269129287597 0.0 29 0.0 0.0 0.0 3.2651715039577835 0.0 30 0.0 0.0 0.0 3.387335092348285 0.0 31 0.0 0.0 0.0 3.504221635883905 0.0 32 0.0 0.0 0.0 3.6145118733509234 0.0 33 0.0 0.0 0.0 3.729815303430079 0.0 34 0.0 0.0 0.0 3.8403693931398415 0.0 35 0.0 0.0 0.0 4.0168865435356205 0.0 36 0.0 0.0 0.0 4.1345646437994725 0.0 37 0.0 0.0 0.0 4.251715039577836 0.0 38 0.0 0.0 0.0 4.3672823218997365 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCCG 25 4.437177E-5 44.0 1 TCGTTAG 25 4.437177E-5 44.0 1 GTCGAGG 25 4.437177E-5 44.0 2 TTGTGCG 20 7.8497967E-4 44.0 1 CACGGCG 20 7.8497967E-4 44.0 4 TCCGATG 25 4.437177E-5 44.0 1 TGGCGTA 20 7.8497967E-4 44.0 6 GGCGTAA 20 7.8497967E-4 44.0 7 ATTGTCA 50 2.7284841E-11 44.0 10 TAACGGG 50 2.7284841E-11 44.0 3 AGTATCG 25 4.437177E-5 44.0 1 GTGGACC 20 7.8497967E-4 44.0 31 AACGGGC 25 4.437177E-5 44.0 4 AACGGCG 25 4.437177E-5 44.0 4 TAATTCG 20 7.8497967E-4 44.0 25 GTAGACG 30 2.5232093E-6 44.0 1 TTAAGCG 20 7.8497967E-4 44.0 1 TACTGGC 30 2.5232093E-6 44.0 3 CTTGCAT 20 7.8497967E-4 44.0 21 TGTTCGG 45 4.783942E-10 44.0 2 >>END_MODULE