FastQCFastQC Report
Thu 26 May 2016
SRR1546101_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546101_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1059134
Sequences flagged as poor quality0
Sequence length50
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT381603.6029435368895717No Hit
GAATCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT65990.6230561949668314TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCC44050.4159058249475515No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATG30350.2865548646346921No Hit
GAACTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTC20880.19714219352791998No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT20780.19619802593439545No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT18630.17589842267361827No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17130.16173590877075045No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT16490.15569323617219352No Hit
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG10650.1005538487103615TruSeq Adapter, Index 14 (95% over 24bp)

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGATCG254.442603E-544.01
ATAGCGC207.856201E-444.010
CTAACGG600.044.02
ATATCCG207.856201E-444.040
TATCGCG207.856201E-444.032
TAATGCG207.856201E-444.01
CGTTTTT221200.043.3535271
GTTTTTT244550.039.663872
TCACGAC1950.039.4871825
CGGTCTA1950.039.4871831
TACGGGA2300.039.2173924
CGACGGT2000.038.528
TGCGACG800.038.51
TATAGCG404.124122E-738.51
GGGCGAT9150.037.7486347
TAGGGTA5650.037.380535
ATAGGGA9900.037.3333324
ACAACGA651.0913936E-1137.2307713
TAACGGG1900.037.052633
CGTTCGA950.037.0526314