SRR1546097_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546097_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1758943
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46919	2.6674542608828142	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	4214	0.2395756997242094	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3758	0.21365103928893658	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3199	0.18187058932552105	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	2581	0.14673585215666454	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCC	2363	0.13434204519418763	No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT	2060	0.11711579056285508	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAATCG	30	2.5284862E-6	44.0	9
TACGTAG	50	2.7284841E-11	44.0	1
CGTTTTT	28970	0.0	43.39248	1
GCCCGAA	315	0.0	41.20635	25
ACGGGAC	480	0.0	39.875	5
ATAGCGG	260	0.0	39.769234	2
GCGATAT	150	0.0	39.6	9
CGTTCGA	145	0.0	39.448273	14
GTTTTTT	32705	0.0	39.31815	2
CGGTCTA	225	0.0	39.11111	31
ACTTCGC	45	2.3521352E-8	39.111107	32
ATCGTAG	80	0.0	38.5	1
GCCCTAC	625	0.0	38.368	26
GGCGATA	465	0.0	38.322582	8
CACAACG	145	0.0	37.931034	12
ATAACGC	105	0.0	37.714287	11
CTAGCGG	245	0.0	37.714287	2
CCCTACA	645	0.0	37.519382	27
TAGGGTA	860	0.0	37.34884	5
AGTACGG	165	0.0	37.333332	2