##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546097_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1758943 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.05023642039566 31.0 28.0 33.0 25.0 33.0 2 28.976438690736426 31.0 28.0 33.0 16.0 33.0 3 28.439811295761146 31.0 28.0 33.0 16.0 34.0 4 32.14192728246453 35.0 32.0 35.0 25.0 37.0 5 33.730211837450106 35.0 33.0 35.0 30.0 37.0 6 33.57260525213154 35.0 33.0 37.0 28.0 37.0 7 34.19439856777622 35.0 33.0 37.0 30.0 37.0 8 34.69463706328175 35.0 35.0 37.0 32.0 37.0 9 36.472012452933384 39.0 37.0 39.0 32.0 39.0 10 36.14765799687653 38.0 35.0 39.0 31.0 39.0 11 36.354030801452915 38.0 35.0 39.0 32.0 39.0 12 35.371756788025536 37.0 34.0 39.0 29.0 39.0 13 35.86636462921197 37.0 35.0 39.0 30.0 39.0 14 36.65950346315941 38.0 35.0 40.0 31.0 41.0 15 37.058869446025255 39.0 35.0 40.0 32.0 41.0 16 36.66331086339921 38.0 35.0 40.0 31.0 41.0 17 36.18106101221017 38.0 34.0 40.0 30.0 41.0 18 35.81363978252848 38.0 34.0 39.0 29.0 40.0 19 35.25123611168753 37.0 34.0 39.0 28.0 41.0 20 35.43401122151201 36.0 34.0 39.0 30.0 41.0 21 35.73057796642643 36.0 34.0 39.0 31.0 41.0 22 36.01106914777795 37.0 35.0 40.0 31.0 41.0 23 36.30960923691103 37.0 35.0 40.0 32.0 41.0 24 35.99174902199787 37.0 35.0 40.0 31.0 41.0 25 35.68788186996395 36.0 35.0 40.0 30.0 41.0 26 35.761721670344066 37.0 34.0 40.0 31.0 41.0 27 36.05959942988488 37.0 35.0 40.0 31.0 41.0 28 35.944680981703215 37.0 35.0 40.0 31.0 41.0 29 35.98736911884012 37.0 35.0 40.0 31.0 41.0 30 35.563607234572125 37.0 35.0 40.0 30.0 41.0 31 34.86264705564649 36.0 34.0 40.0 27.0 41.0 32 34.69527892603683 37.0 34.0 40.0 25.0 41.0 33 34.221173170477954 37.0 33.0 40.0 22.0 41.0 34 33.73379069134133 37.0 33.0 40.0 18.0 41.0 35 33.346286377671134 37.0 33.0 40.0 15.0 41.0 36 32.93801277244345 36.0 33.0 40.0 12.0 41.0 37 32.85249038769307 37.0 33.0 40.0 10.0 41.0 38 32.655628977175496 36.0 32.0 40.0 10.0 41.0 39 32.46660920791634 36.0 32.0 40.0 10.0 41.0 40 32.27884871766737 36.0 31.0 40.0 10.0 41.0 41 31.942072597008544 35.0 31.0 40.0 10.0 40.0 42 32.12836231759642 36.0 31.0 40.0 10.0 41.0 43 31.91942490461601 35.0 31.0 40.0 10.0 40.0 44 31.66441038737469 35.0 30.0 39.0 9.0 40.0 45 31.61823094892785 35.0 30.0 39.0 10.0 40.0 46 31.470769092574347 35.0 30.0 39.0 10.0 40.0 47 31.430255556888426 35.0 30.0 39.0 10.0 40.0 48 31.40691995135715 35.0 30.0 39.0 10.0 40.0 49 31.376256081066867 35.0 30.0 39.0 9.0 40.0 50 31.546017693580747 35.0 30.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 6.0 11 3.0 12 24.0 13 32.0 14 71.0 15 190.0 16 508.0 17 1093.0 18 2254.0 19 3837.0 20 5984.0 21 9146.0 22 13018.0 23 18717.0 24 27611.0 25 42524.0 26 59707.0 27 64933.0 28 58656.0 29 53618.0 30 54935.0 31 63497.0 32 80822.0 33 115682.0 34 172645.0 35 156590.0 36 171226.0 37 241893.0 38 277726.0 39 61993.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.27922394301578 21.10983698732705 24.63047409722771 26.980464972429463 2 43.42153213606126 19.0193769781056 25.852514834193034 11.706576051640104 3 27.489122728820657 17.61495398088511 42.35538047566067 12.540542814633563 4 24.459917120679865 22.64598682276799 39.27171033967559 13.622385716876556 5 19.080493228035248 26.743788741306567 39.64847070086978 14.5272473297884 6 17.604208891362596 35.209384272258966 37.54061388004046 9.645792956337983 7 70.84436505333032 4.762689865447601 21.71639444825671 2.676550632965366 8 72.03610350079565 3.761463560786222 21.226327402309227 2.9761055361089017 9 68.05945388793155 5.272655225325664 22.32124633942089 4.346644547321886 10 33.60774055782365 26.9727330561593 28.473463892803803 10.946062493213253 11 28.653515207712815 20.706128623838293 35.66806883452164 14.97228733392725 12 26.504611007860973 18.998910140919858 40.331778801245974 14.164700049973195 13 19.625707029733196 25.926138595736187 40.11795720498049 14.330197169550122 14 15.468210169402873 30.600195685704424 39.27074385014182 14.660850294750883 15 14.749994741159888 22.98454242121547 47.32506965831183 14.940393179312803 16 16.637605652940433 18.99453251185513 47.43706873957826 16.93079309562618 17 16.348454725366313 18.797880317895462 39.3184429512497 25.53522200548852 18 18.50315786242078 22.579014783310203 41.63466354509498 17.28316380917403 19 22.16956433494434 23.631010214657326 36.86424176337721 17.335183687021125 20 22.699030042474373 21.979848124697618 36.88823344474494 18.43288838808307 21 21.177377550039996 22.89386296201753 39.17165024676752 16.757109241174955 22 18.647847030858873 20.41413507998838 37.76603335071119 23.171984538441553 23 17.194872147647764 25.505260829941616 37.473869249884736 19.825997772525884 24 17.120964124477027 23.247996097656376 43.22578957930985 16.405250198556747 25 20.229819840665673 21.69575705409442 40.0274483027591 18.046974802480808 26 16.031673567591444 25.145101347798082 37.421394553433515 21.401830531176962 27 16.1487893581543 24.627745185602944 40.50063020802834 18.722835248214412 28 15.296857260297802 23.539477970576648 44.2821626397217 16.881502129403852 29 16.596671978568946 23.867231627176093 41.55040839868035 17.985687995574615 30 17.78073536208962 24.215565825612316 41.678382983416746 16.325315828881322 31 23.755175693584157 23.41440285444156 35.93481994584247 16.895601506131808 32 22.480432850865547 24.609097622833715 35.90406283773835 17.006406688562393 33 21.029447799047496 22.945882839864623 34.76008034370642 21.26458901738146 34 17.619104200647776 24.507843631089806 35.51524978353477 22.357802384727645 35 18.213154149963927 24.022267918858088 36.37735844765862 21.387219483519363 36 24.525183590372173 24.565946707767107 31.998194370141615 18.910675331719105 37 18.532777924014592 27.66445530071185 33.05274815613695 20.750018619136608 38 19.598361061160027 29.2052670268451 31.021869384056224 20.174502527938653 39 19.35139455911874 25.54818433570616 31.528366752077808 23.572054353097286 40 20.496570951986506 23.657275989045694 35.03513189455258 20.81102116441522 41 17.901489701485495 23.538113514764262 34.71789591817359 23.842500865576653 42 20.45683117645086 26.0926590571724 30.50400155093144 22.9465082154453 43 19.706323627314816 24.55906757637968 31.405167762684748 24.32944103362076 44 19.385903920706923 25.921817818996978 33.20681795828517 21.48546030201092 45 20.15784479656248 28.42616275797453 30.164991133879838 21.251001311583153 46 22.21697917442464 26.52900065550731 30.510937534644384 20.74308263542366 47 21.0041485141929 25.643184571643314 31.517223696276687 21.835443217887107 48 18.955986635155316 27.001557185195878 32.544602070675396 21.4978541089734 49 19.293803153371087 26.010564299127374 33.30557044770638 21.390062099795163 50 18.724483965654372 26.031258545615177 34.22862480478332 21.015632683947118 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1824.0 1 2317.5 2 2811.0 3 37211.5 4 71612.0 5 49737.0 6 27862.0 7 27644.5 8 27427.0 9 28144.5 10 28862.0 11 28619.0 12 28376.0 13 27434.5 14 26493.0 15 24938.0 16 23383.0 17 21784.5 18 20186.0 19 18994.5 20 17803.0 21 16593.0 22 15383.0 23 14979.0 24 14575.0 25 14745.0 26 14915.0 27 16745.5 28 18576.0 29 19930.0 30 21284.0 31 24921.5 32 28559.0 33 34090.0 34 39621.0 35 42944.5 36 46268.0 37 51729.0 38 57190.0 39 65364.5 40 73539.0 41 89459.5 42 105380.0 43 120845.5 44 136311.0 45 140280.0 46 144249.0 47 144078.5 48 143908.0 49 143934.5 50 143961.0 51 127285.5 52 110610.0 53 96289.5 54 81969.0 55 72772.5 56 63576.0 57 59785.0 58 55994.0 59 51674.5 60 47355.0 61 41530.5 62 35706.0 63 31661.5 64 27617.0 65 22489.5 66 17362.0 67 14814.0 68 12266.0 69 10805.5 70 9345.0 71 8104.0 72 6863.0 73 5776.5 74 4690.0 75 3607.0 76 2524.0 77 1961.5 78 1399.0 79 1025.5 80 652.0 81 484.5 82 317.0 83 233.0 84 149.0 85 125.5 86 102.0 87 70.5 88 39.0 89 32.0 90 25.0 91 16.5 92 8.0 93 9.0 94 10.0 95 7.0 96 4.0 97 3.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1758943.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.797030164496075 #Duplication Level Percentage of deduplicated Percentage of total 1 77.96960170773272 23.232625739990564 2 7.223202939458698 4.30459991742655 3 3.0331472474242087 2.7113634007457215 4 1.8173543327273365 2.166070474874163 5 1.3113335129452974 1.9536922120472815 6 0.9654583257308497 1.7260674512619603 7 0.7691619027878251 1.6043118293125016 8 0.6299517460845739 1.5016552944207218 9 0.5080790376724165 1.3625321770325818 >10 4.828355914843672 30.819995439673075 >50 0.7791893718506628 16.040965796475977 >100 0.15566510639616493 6.747219808551436 >500 0.0062033334502001 1.3281974922016566 >1k 0.00310166672510005 1.7905308281841763 >5k 0.0 0.0 >10k+ 1.9385417031875314E-4 2.7101721378015795 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 46919 2.6674542608828142 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 4214 0.2395756997242094 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3758 0.21365103928893658 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3199 0.18187058932552105 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT 2581 0.14673585215666454 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCC 2363 0.13434204519418763 No Hit GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT 2060 0.11711579056285508 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05082597901125847 0.0 2 0.0 0.0 0.0 0.21001249045591586 0.0 3 0.0 0.0 0.0 0.29688284384428604 0.0 4 0.0 0.0 0.0 0.46374441923359655 0.0 5 0.0 0.0 0.0 0.8924678059493685 0.0 6 5.6852325515949065E-5 0.0 0.0 1.2551856427411234 0.0 7 5.6852325515949065E-5 0.0 0.0 1.492373544793663 0.0 8 5.6852325515949065E-5 0.0 0.0 1.9216654547645944 0.0 9 5.6852325515949065E-5 0.0 0.0 2.121046560349028 0.0 10 1.1370465103189813E-4 0.0 0.0 2.5616520830976333 0.0 11 1.1370465103189813E-4 0.0 0.0 2.847448723466309 0.0 12 1.1370465103189813E-4 0.0 0.0 3.1657080417045917 0.0 13 1.705569765478472E-4 0.0 0.0 3.2875425752852707 0.0 14 2.8426162757974534E-4 0.0 0.0 3.343257854290901 0.0 15 3.9796627861164344E-4 0.0 0.0 3.4148349321154807 0.0 16 5.685232551594907E-4 0.0 0.0 3.5392846726698934 0.0 17 5.685232551594907E-4 0.0 0.0 3.6911372341229933 0.0 18 6.253755806754398E-4 0.0 0.0 3.9326459129147446 0.0 19 6.253755806754398E-4 0.0 0.0 4.039755694186793 0.0 20 6.822279061913888E-4 0.0 0.0 4.1470360324353885 0.0 21 6.822279061913888E-4 0.0 0.0 4.275806549729014 0.0 22 6.822279061913888E-4 0.0 0.0 4.416800317008567 0.0 23 6.822279061913888E-4 0.0 0.0 4.576498499382868 0.0 24 7.390802317073379E-4 0.0 0.0 4.703734003887562 0.0 25 7.390802317073379E-4 0.0 0.0 4.806466156094882 0.0 26 7.390802317073379E-4 0.0 0.0 4.904365860633346 0.0 27 7.390802317073379E-4 0.0 0.0 5.010622857022655 0.0 28 7.390802317073379E-4 0.0 0.0 5.132173128975754 0.0 29 7.390802317073379E-4 0.0 0.0 5.250653375350992 0.0 30 7.390802317073379E-4 0.0 0.0 5.402847050757187 0.0 31 7.390802317073379E-4 0.0 0.0 5.531674420376328 0.0 32 7.390802317073379E-4 0.0 0.0 5.65908048185757 0.0 33 7.959325572232869E-4 0.0 0.0 5.818608107255323 0.0 34 7.959325572232869E-4 0.0 0.0 5.964036355925121 0.0 35 7.959325572232869E-4 0.0 0.0 6.157106853377284 0.0 36 7.959325572232869E-4 0.0 0.0 6.297020426472034 0.0 37 7.959325572232869E-4 0.0 0.0 6.434034530965472 0.0 38 7.959325572232869E-4 0.0 0.0 6.594983464501124 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAATCG 30 2.5284862E-6 44.0 9 TACGTAG 50 2.7284841E-11 44.0 1 CGTTTTT 28970 0.0 43.39248 1 GCCCGAA 315 0.0 41.20635 25 ACGGGAC 480 0.0 39.875 5 ATAGCGG 260 0.0 39.769234 2 GCGATAT 150 0.0 39.6 9 CGTTCGA 145 0.0 39.448273 14 GTTTTTT 32705 0.0 39.31815 2 CGGTCTA 225 0.0 39.11111 31 ACTTCGC 45 2.3521352E-8 39.111107 32 ATCGTAG 80 0.0 38.5 1 GCCCTAC 625 0.0 38.368 26 GGCGATA 465 0.0 38.322582 8 CACAACG 145 0.0 37.931034 12 ATAACGC 105 0.0 37.714287 11 CTAGCGG 245 0.0 37.714287 2 CCCTACA 645 0.0 37.519382 27 TAGGGTA 860 0.0 37.34884 5 AGTACGG 165 0.0 37.333332 2 >>END_MODULE