SRR1546096_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546096_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1757147
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47791	2.7198065955779454	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	4179	0.23782870755833177	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3693	0.210170236183996	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	3158	0.179723153498256	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	2672	0.1520646821239202	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCC	2275	0.1294712394580533	No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAAT	2119	0.12059321160950108	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATG	1762	0.10027618634069888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATGCGT	20	7.85762E-4	44.0	30
ATCGACG	25	4.4438035E-5	44.0	15
CGTTTTT	29910	0.0	43.418922	1
TTGCACG	135	0.0	40.74074	1
CGGTCTA	250	0.0	40.48	31
GTTTTTT	33345	0.0	39.691708	2
GTTGATC	1315	0.0	39.31559	16
CGACGGT	280	0.0	38.499996	28
CACGACG	270	0.0	38.296295	26
TGCACGG	270	0.0	38.296295	2
AGGGTAC	910	0.0	38.197803	6
ACGATAG	75	0.0	38.13333	1
TCGTCCC	400	0.0	37.95	38
GCCAGTA	1345	0.0	37.947956	25
TGCGTAG	105	0.0	37.714287	1
CCATACG	35	7.2924086E-6	37.714283	34
CCCGATT	35	7.2924086E-6	37.714283	32
GGCGATA	540	0.0	37.48148	8
CGTTAGG	235	0.0	37.44681	2
GGACTAA	905	0.0	37.436462	8