##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546094_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1525940 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.955939289880337 28.0 25.0 30.0 16.0 33.0 2 26.28669213730553 30.0 25.0 31.0 16.0 33.0 3 26.629185944401485 30.0 25.0 31.0 16.0 33.0 4 27.766651375545564 32.0 19.0 35.0 10.0 35.0 5 31.32977115745049 33.0 30.0 35.0 19.0 37.0 6 30.02496428431 33.0 28.0 35.0 17.0 36.0 7 30.080114552341506 32.0 28.0 35.0 17.0 35.0 8 32.483616655962884 35.0 32.0 35.0 28.0 35.0 9 27.264801368336894 31.0 23.0 34.0 10.0 37.0 10 31.47112992647155 34.0 28.0 37.0 17.0 39.0 11 33.727934256917045 35.0 32.0 37.0 27.0 39.0 12 33.380981558907955 35.0 32.0 39.0 23.0 39.0 13 33.89639894098064 35.0 32.0 39.0 25.0 39.0 14 33.74565644782888 36.0 31.0 39.0 24.0 40.0 15 32.32024194922474 35.0 28.0 38.0 18.0 40.0 16 30.863456623458326 34.0 27.0 38.0 17.0 40.0 17 31.05887256379674 33.0 27.0 38.0 17.0 40.0 18 32.03433228043043 34.0 29.0 38.0 18.0 39.0 19 31.714655884241843 35.0 29.0 37.0 18.0 39.0 20 31.996682045165603 34.0 30.0 37.0 19.0 39.0 21 33.03115915435731 35.0 31.0 37.0 25.0 39.0 22 33.3540171959579 35.0 31.0 37.0 26.0 39.0 23 34.52132521593247 35.0 33.0 38.0 29.0 40.0 24 34.12254348139508 35.0 33.0 38.0 27.0 40.0 25 33.030571975307026 35.0 31.0 38.0 23.0 40.0 26 26.51024876469586 33.0 20.0 36.0 0.0 39.0 27 29.942338492994484 34.0 24.0 37.0 15.0 39.0 28 31.425172680446153 34.0 29.0 37.0 20.0 39.0 29 32.56535512536535 35.0 30.0 37.0 23.0 39.0 30 32.367703186232745 35.0 30.0 38.0 22.0 39.0 31 31.21672804959566 34.0 29.0 37.0 18.0 39.0 32 31.461781590363973 34.0 30.0 37.0 18.0 39.0 33 31.016125797868856 34.0 29.0 37.0 16.0 39.0 34 30.74999606799743 34.0 29.0 38.0 13.0 39.0 35 29.755391430855735 34.0 26.0 37.0 9.0 39.0 36 29.56661795352373 34.0 25.0 37.0 9.0 39.0 37 29.730942894216025 34.0 25.0 38.0 9.0 39.0 38 29.42332726057381 34.0 25.0 37.0 9.0 39.0 39 29.375839810215343 34.0 25.0 37.0 8.0 39.0 40 29.18625634035414 33.0 24.0 37.0 8.0 39.0 41 28.48957363985478 33.0 23.0 36.0 8.0 38.0 42 28.729240337103686 33.0 23.0 37.0 8.0 38.0 43 28.34922736149521 33.0 23.0 36.0 8.0 38.0 44 28.110635411615135 33.0 23.0 36.0 7.0 38.0 45 27.515160491238188 31.0 23.0 35.0 8.0 38.0 46 27.083144160320852 31.0 21.0 35.0 7.0 38.0 47 27.07835498119192 31.0 22.0 35.0 7.0 38.0 48 27.103342857517333 31.0 22.0 35.0 7.0 38.0 49 26.941452481748954 31.0 20.0 35.0 7.0 38.0 50 28.756142443346395 33.0 23.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 11.0 11 32.0 12 57.0 13 168.0 14 454.0 15 1049.0 16 2321.0 17 4197.0 18 7118.0 19 11539.0 20 17122.0 21 24323.0 22 33027.0 23 43406.0 24 56555.0 25 69191.0 26 79326.0 27 83688.0 28 88729.0 29 100266.0 30 118091.0 31 138418.0 32 155232.0 33 161841.0 34 149262.0 35 113600.0 36 55665.0 37 10981.0 38 267.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.551659960417837 21.670773424905303 24.306067079963825 28.47149953471303 2 43.834292305070974 16.464081156533023 27.091890900035388 12.609735638360617 3 28.54640418365073 13.734091772939957 44.170478524712635 13.549025518696672 4 25.388678453936592 22.42355531672281 38.49705755141093 13.690708677929669 5 18.282697878029282 26.772743358192326 40.710185197320996 14.234373566457398 6 17.516743777605935 33.832981637548 38.969946393698315 9.680328191147751 7 72.66747054274742 3.34790358729701 22.08533756242054 1.8992883075350278 8 74.49080566732637 2.408613706960955 21.13431720775391 1.9662634179587664 9 62.42768391942016 3.433752310051509 20.560769099702476 13.577794670825853 10 34.02709149769978 27.02786479153833 28.86358572420934 10.081457986552552 11 29.054091248672947 20.273339711915277 36.295463779703 14.37710525970877 12 26.57928883180204 18.68638347510387 41.25168748443582 13.48264020865827 13 19.01588529037839 26.20260298570062 40.90259118969291 13.878920534228081 14 14.819914282344 30.601203192786087 40.24614336081366 14.332739164056255 15 13.320117435810058 21.370499495393002 47.15021560480753 18.15916746398941 16 14.85707170662018 16.94024666762782 47.48063488734813 20.72204673840387 17 15.620338938621439 17.828289447815774 40.33972502195368 26.211646591609107 18 17.876653079413344 22.22000865040565 42.807253234072114 17.096085036108892 19 22.275187753122665 23.041797187307495 37.82212931045781 16.860885749112022 20 22.872393409963696 21.336946406804984 37.86177700302764 17.928883180203677 21 20.92710067237244 22.31968491552748 40.130542485287755 16.622671926812327 22 18.24154291780804 19.878828787501472 38.541423647063446 23.338204647627038 23 16.691744105272814 25.510242866692007 38.2732610718639 19.524751956171276 24 16.439571673853493 22.764787606327904 45.006291204110255 15.78934951570835 25 19.932304022438625 20.413384536744562 41.608254584059665 18.046056856757147 26 12.757775535080015 37.47146021468734 31.333800804749863 18.436963445482785 27 15.30551659960418 25.03263562132194 41.629683998060216 18.032163781013672 28 14.620496218724197 23.148682123805656 45.97559537072231 16.25522628674784 29 15.87893364090331 23.4941740828604 42.96512313721379 17.661769139022503 30 17.330825589472717 23.576877203559775 42.94428352359857 16.14801368336894 31 24.239157502916235 22.804042098640835 36.68342136650196 16.27337903194097 32 22.333053724261767 24.078010930967142 36.59193677339869 16.996998571372398 33 20.825982672975346 22.300811303196717 35.64884595724603 21.22436006658191 34 17.07164108680551 23.944060710119665 35.91340419675741 23.070894006317417 35 17.909616367616028 23.452756989134567 36.57824029778366 22.059386345465747 36 24.4638059163532 23.93908017353238 32.04280640130018 19.55430750881424 37 17.884320484422716 27.751353264217464 32.765967207098576 21.598359044261244 38 19.029909432874163 29.708114342634705 30.875001638334403 20.386974586156732 39 18.815287625987914 25.29555552642961 31.618477790738826 24.27067905684365 40 20.188736123307603 23.117815903639723 35.25938110279566 21.43406687025702 41 17.30074576982057 22.742964992070462 35.112586340223075 24.843702897885894 42 19.73799756215841 25.64406202078719 29.787671861278948 24.830268555775454 43 19.09727774355479 24.05396018192065 31.43026593444041 25.418496140084144 44 18.692347012333382 25.39005465483571 33.47359660274978 22.44400173008113 45 19.708900743148487 29.029778366121867 29.599001271347497 21.66231961938215 46 21.501566247689947 26.061181959972213 30.27419164580521 22.16306014653263 47 20.579315045152498 25.164947507765707 30.903836323839734 23.351901123242065 48 18.192458419072835 26.661074485235332 32.81111970326487 22.335347392426964 49 18.66790306303 26.003250455456968 32.73667378796021 22.592172693552826 50 18.326277573168014 26.211122324599916 34.154947114565445 21.30765298766662 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1086.0 1 1462.0 2 1838.0 3 22387.5 4 42937.0 5 33754.0 6 24571.0 7 24167.5 8 23764.0 9 25068.0 10 26372.0 11 26907.5 12 27443.0 13 27255.0 14 27067.0 15 26217.5 16 25368.0 17 24108.0 18 22848.0 19 21844.5 20 20841.0 21 19478.0 22 18115.0 23 17246.0 24 16377.0 25 16136.5 26 15896.0 27 16914.0 28 17932.0 29 19254.0 30 20576.0 31 23448.5 32 26321.0 33 30597.0 34 34873.0 35 37424.5 36 39976.0 37 44413.0 38 48850.0 39 55142.5 40 61435.0 41 74203.0 42 86971.0 43 97516.5 44 108062.0 45 113565.5 46 119069.0 47 119931.0 48 120793.0 49 120958.0 50 121123.0 51 108517.0 52 95911.0 53 83851.5 54 71792.0 55 64316.5 56 56841.0 57 53123.0 58 49405.0 59 45701.5 60 41998.0 61 36872.0 62 31746.0 63 28338.0 64 24930.0 65 20646.5 66 16363.0 67 14020.0 68 11677.0 69 10173.5 70 8670.0 71 7507.5 72 6345.0 73 5448.0 74 4551.0 75 3497.5 76 2444.0 77 1885.5 78 1327.0 79 997.0 80 667.0 81 512.5 82 358.0 83 280.0 84 202.0 85 151.0 86 100.0 87 75.5 88 51.0 89 41.5 90 32.0 91 22.0 92 12.0 93 8.0 94 4.0 95 6.0 96 8.0 97 5.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1525940.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.91091355716083 #Duplication Level Percentage of deduplicated Percentage of total 1 82.32362809436083 36.97229345057696 2 7.216038611110395 6.481577725774276 3 2.749909787019296 3.7050288220444245 4 1.533298285935804 2.7544730710802305 5 1.0042997736951256 2.2552010160948983 6 0.7145711758547518 1.925522658555092 7 0.5166378145707374 1.624187336138281 8 0.4145027766503042 1.4892558697075964 9 0.33961113127327625 1.372702154369734 >10 2.864886338751388 26.524052571941308 >50 0.27459367888240194 8.220973331976376 >100 0.044047164170776455 3.3912150298251516 >500 0.0031802941799063214 0.9627450555392717 >1k 6.360588359812642E-4 0.5573223361344468 >5k 0.0 0.0 >10k+ 1.5901470899531606E-4 1.7634495702419137 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24693 1.6182156572342294 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2630 0.17235277927048245 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2305 0.15105443202222893 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1821 0.11933627796636827 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0368297573954415 0.0 2 0.0 0.0 0.0 0.15007143138000184 0.0 3 0.0 0.0 0.0 0.2342818197307889 0.0 4 0.0 0.0 0.0 0.3228829442835236 0.0 5 0.0 0.0 0.0 0.5836402479782954 0.0 6 0.0 0.0 0.0 0.7790607756530401 0.0 7 0.0 0.0 0.0 0.8988557872524476 0.0 8 0.0 0.0 0.0 1.136807476047551 0.0 9 0.0 0.0 0.0 1.2778353015190635 0.0 10 0.0 0.0 0.0 1.5457357432140189 0.0 11 0.0 0.0 0.0 1.748561542393541 0.0 12 0.0 0.0 0.0 1.9599066804723646 0.0 13 6.553337614847242E-5 0.0 0.0 2.0426098011717366 0.0 14 6.553337614847242E-5 0.0 0.0 2.0781288910442086 0.0 15 6.553337614847242E-5 0.0 0.0 2.124329921228882 0.0 16 6.553337614847242E-5 0.0 0.0 2.1964166349922016 0.0 17 6.553337614847242E-5 0.0 0.0 2.3092651087198712 0.0 18 6.553337614847242E-5 0.0 0.0 2.451996801971244 0.0 19 6.553337614847242E-5 0.0 0.0 2.5231005150923367 0.0 20 6.553337614847242E-5 0.0 0.0 2.588502824488512 0.0 21 6.553337614847242E-5 0.0 0.0 2.6669462757382334 0.0 22 6.553337614847242E-5 0.0 0.0 2.75462993302489 0.0 23 6.553337614847242E-5 0.0 0.0 2.844869391981336 0.0 24 6.553337614847242E-5 0.0 0.0 2.914072637194123 0.0 25 6.553337614847242E-5 0.0 0.0 2.966499338112901 0.0 26 6.553337614847242E-5 0.0 0.0 3.0258070435272684 0.0 27 6.553337614847242E-5 0.0 0.0 3.0993354915658546 0.0 28 6.553337614847242E-5 0.0 0.0 3.1886574832562222 0.0 29 6.553337614847242E-5 0.0 0.0 3.2842706790568434 0.0 30 6.553337614847242E-5 0.0 0.0 3.396005085389989 0.0 31 6.553337614847242E-5 0.0 0.0 3.492797881961283 0.0 32 6.553337614847242E-5 0.0 0.0 3.585199942330629 0.0 33 6.553337614847242E-5 0.0 0.0 3.7012595514895734 0.0 34 6.553337614847242E-5 0.0 0.0 3.8136492915842037 0.0 35 6.553337614847242E-5 0.0 0.0 3.9646381902302843 0.0 36 6.553337614847242E-5 0.0 0.0 4.066542590141159 0.0 37 6.553337614847242E-5 0.0 0.0 4.167660589538252 0.0 38 6.553337614847242E-5 0.0 0.0 4.2903390696881925 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGATC 25 4.4435288E-5 44.0 11 CGTTTTT 27505 0.0 43.288128 1 CGGTCTA 205 0.0 39.707317 31 CGGAATT 355 0.0 39.661972 9 TACGTAG 100 0.0 39.6 1 GTTTTTT 30505 0.0 39.571873 2 GCGGAAT 380 0.0 39.36842 8 ACGGGAT 485 0.0 39.010307 5 AGGGTAC 695 0.0 38.93525 6 TACCGGT 40 4.1257226E-7 38.5 25 CGCAAGA 795 0.0 37.91195 20 ATAGCGG 215 0.0 37.860466 2 GGCGTAT 35 7.2917774E-6 37.714287 7 TCGAACG 35 7.2917774E-6 37.714287 1 GTCGGTA 35 7.2917774E-6 37.714287 18 GTAGCAT 1220 0.0 37.688526 29 GGGTACC 1180 0.0 37.47458 7 GGTACCT 1135 0.0 37.409695 8 GTTGATC 1250 0.0 37.312 16 ACGGTCT 230 0.0 37.304348 30 >>END_MODULE