##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546093_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1479433 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.032761875664526 31.0 28.0 33.0 23.0 33.0 2 28.89289680573571 31.0 28.0 33.0 16.0 33.0 3 28.324423613641173 31.0 28.0 33.0 16.0 34.0 4 32.145874804739385 35.0 32.0 35.0 25.0 37.0 5 33.66500950026125 35.0 33.0 35.0 28.0 37.0 6 33.474758911015236 35.0 33.0 37.0 28.0 37.0 7 34.25516126786411 35.0 33.0 37.0 30.0 37.0 8 34.73075968969193 35.0 35.0 37.0 32.0 37.0 9 36.51898734177215 39.0 37.0 39.0 32.0 39.0 10 36.308640539990655 38.0 35.0 39.0 32.0 39.0 11 36.44435401941149 39.0 35.0 39.0 32.0 39.0 12 35.1852885531146 37.0 34.0 39.0 30.0 39.0 13 35.158773665316374 37.0 34.0 39.0 27.0 39.0 14 35.92060133848576 38.0 34.0 40.0 27.0 41.0 15 36.543118208124326 38.0 35.0 40.0 31.0 41.0 16 36.217305548814984 38.0 34.0 40.0 31.0 41.0 17 35.70924401442985 37.0 34.0 40.0 29.0 41.0 18 35.37263870685594 37.0 34.0 39.0 29.0 40.0 19 34.862423644734164 37.0 33.0 39.0 27.0 40.0 20 35.08282902977019 35.0 34.0 39.0 29.0 40.0 21 35.30364673493156 35.0 34.0 39.0 30.0 40.0 22 35.62376667277261 35.0 34.0 39.0 31.0 40.0 23 35.98588783675908 36.0 35.0 40.0 31.0 41.0 24 35.67304298335917 35.0 34.0 40.0 31.0 41.0 25 35.35229577817989 35.0 34.0 40.0 30.0 41.0 26 35.43506059416006 35.0 34.0 40.0 30.0 41.0 27 35.712933265649745 36.0 34.0 40.0 31.0 41.0 28 35.6436350953372 36.0 35.0 40.0 31.0 41.0 29 35.7701105761464 36.0 35.0 40.0 31.0 41.0 30 35.392645020085396 36.0 34.0 40.0 30.0 41.0 31 34.68078851830397 35.0 34.0 39.0 28.0 41.0 32 34.51287418896293 35.0 34.0 40.0 25.0 41.0 33 34.09839648027319 35.0 33.0 40.0 23.0 41.0 34 33.69707448732048 35.0 33.0 40.0 20.0 41.0 35 33.38557474383767 35.0 33.0 40.0 18.0 41.0 36 32.96758487880154 35.0 33.0 40.0 15.0 41.0 37 32.89069528664022 35.0 33.0 40.0 15.0 41.0 38 32.74086896804384 35.0 32.0 40.0 15.0 41.0 39 32.60268359567483 35.0 32.0 40.0 15.0 40.0 40 32.386635961209464 35.0 32.0 39.0 12.0 40.0 41 32.11810808600322 35.0 31.0 39.0 10.0 40.0 42 32.293151497904944 35.0 32.0 39.0 10.0 40.0 43 32.07324630449639 35.0 31.0 39.0 10.0 40.0 44 31.867777047017338 35.0 31.0 39.0 10.0 40.0 45 31.774301370863025 35.0 31.0 39.0 10.0 40.0 46 31.634094953945194 35.0 31.0 38.0 10.0 40.0 47 31.598119009106867 35.0 31.0 38.0 10.0 40.0 48 31.615636531022357 35.0 31.0 38.0 10.0 40.0 49 31.63062335367671 35.0 31.0 38.0 10.0 40.0 50 31.74063306685737 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 0.0 11 5.0 12 10.0 13 15.0 14 53.0 15 158.0 16 377.0 17 936.0 18 1757.0 19 3148.0 20 4946.0 21 7221.0 22 10190.0 23 14622.0 24 21147.0 25 32241.0 26 45697.0 27 51714.0 28 48352.0 29 45980.0 30 49077.0 31 58563.0 32 77261.0 33 118650.0 34 189345.0 35 137301.0 36 131096.0 37 181643.0 38 203342.0 39 44584.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.053202138927553 20.9195685103685 26.928965353618583 25.09826399708537 2 40.32524622608797 18.966860952810976 28.587708939843846 12.120183881257212 3 28.075823643247112 17.882932177394988 41.47690365160166 12.564340527756244 4 25.148485940221693 23.955326128320785 37.204320844539765 13.691867086917759 5 19.533834921892375 27.98970957116679 38.548754827018186 13.927700679922648 6 17.519008971680368 35.82798274744446 36.77827924617066 9.874729034704512 7 73.65206805580246 4.942163653237422 19.04249803809973 2.3632702528603864 8 75.1362177266561 3.2937618668773783 18.615239757393542 2.9547806490729895 9 71.55667069749019 4.745399081945583 20.188410019243857 3.509520201320371 10 42.21441592826441 22.688083880784056 24.60206038394439 10.495439807007143 11 38.77086694699929 18.18135731729656 29.973307341393628 13.074468394310523 12 34.80272509806122 18.24827484583621 34.57520550102641 12.373794555076167 13 19.631439882711824 32.727335404847665 35.04923845824718 12.59198625419333 14 14.150691514924974 36.19569118709668 36.758136394145595 12.895480903832752 15 12.696620935182601 21.28937234737903 52.76906760900967 13.244939108428703 16 15.032786209311269 16.205330014944916 52.39284239299786 16.36904138274596 17 15.321815857832021 16.346600352973066 37.068931137807525 31.26265265138739 18 19.192961087119187 21.423950932553215 41.66373198380731 17.71935599652029 19 24.460519672063555 22.4675264104559 35.5465235667989 17.525430350681646 20 26.19125029656632 20.61073397713854 33.48444978583011 19.71356594046503 21 20.460270928119083 24.39238546118682 37.23696848725154 17.910375123442563 22 19.038036869530423 20.565851917592752 35.11561523908146 25.280495973795365 23 16.52869714275672 26.575383947769176 34.678691093141765 22.21722781633234 24 17.542396309937658 21.76320252421029 45.235843732024364 15.458557433827687 25 17.455335929372943 20.33170816116715 42.59239857431867 19.620557335141235 26 14.50298864497412 27.712305998311514 36.78247004088729 21.00223531582708 27 15.111600187369078 27.955507278802084 38.76559465687192 18.167297876956916 28 13.746685385549734 24.7254860476953 45.28762032481362 16.24020824194134 29 14.87705087016445 23.304468671443722 42.55812868849079 19.260351769901035 30 17.310145170480855 25.06264224199406 40.68335639396985 16.943856193555234 31 26.510899783903696 22.94649369048818 33.32337456309275 17.21923196251537 32 25.12313839153243 24.4731596496766 34.70924333849522 15.694458620295748 33 24.047793985939208 23.883001122727425 32.331508084516166 19.737696806817205 34 17.474059318671408 25.660574017207942 33.39468566673854 23.470680997382104 35 17.380645152568587 24.070099828785757 35.46162617705567 23.08762884158999 36 27.601858279489505 23.910782036090854 30.54548600713922 17.94187367728042 37 18.35987165353213 30.288428066698525 31.606230224687433 19.745470055081913 38 19.130910287927875 31.34356202680351 28.32666298507604 21.198864700192573 39 19.424130731165253 27.556029911459323 30.570292808123114 22.449546549252315 40 21.73062247496169 23.209094294908926 32.043357151016636 23.01692607911274 41 16.42311615328305 23.123994124776182 33.05989524365078 27.392994478289996 42 20.51671146986717 25.019787986343417 28.85815038599247 25.60535015779694 43 20.441885506136472 23.368006526824804 30.26693334541003 25.923174621628693 44 18.568194707026272 26.903955772245176 32.89550794121802 21.632341579510527 45 18.092877474005245 32.451216107792646 27.85878103300386 21.59712538519825 46 22.15044547471903 28.196410381544823 29.77221678845882 19.880927355277326 47 20.72469655604546 25.98840231358906 30.146279013649146 23.140622116716337 48 20.248230234150515 24.915626459596346 33.119512678167915 21.716630628085216 49 20.141500155802934 24.039277209579616 34.09813083796292 21.72109179665453 50 18.10058312880678 28.52504979948399 32.65284740843283 20.721519663276403 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 790.0 1 1404.5 2 2019.0 3 27394.5 4 52770.0 5 36308.0 6 19846.0 7 20502.0 8 21158.0 9 22085.5 10 23013.0 11 22835.5 12 22658.0 13 21383.0 14 20108.0 15 18620.0 16 17132.0 17 15932.5 18 14733.0 19 13764.0 20 12795.0 21 12108.0 22 11421.0 23 11068.0 24 10715.0 25 10756.0 26 10797.0 27 11034.5 28 11272.0 29 14253.5 30 17235.0 31 18128.0 32 19021.0 33 22071.0 34 25121.0 35 28028.5 36 30936.0 37 33648.0 38 36360.0 39 46171.0 40 55982.0 41 78231.0 42 100480.0 43 121841.5 44 143203.0 45 143847.5 46 144492.0 47 136054.5 48 127617.0 49 122294.0 50 116971.0 51 106363.0 52 95755.0 53 84351.5 54 72948.0 55 67254.5 56 61561.0 57 55468.5 58 49376.0 59 44095.0 60 38814.0 61 34411.5 62 30009.0 63 25985.5 64 21962.0 65 18274.5 66 14587.0 67 12244.0 68 9901.0 69 8098.5 70 6296.0 71 5270.0 72 4244.0 73 3348.0 74 2452.0 75 1901.0 76 1350.0 77 1046.5 78 743.0 79 594.0 80 445.0 81 311.5 82 178.0 83 131.0 84 84.0 85 60.5 86 37.0 87 26.0 88 15.0 89 13.5 90 12.0 91 12.0 92 12.0 93 8.0 94 4.0 95 2.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1479433.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.139232997957052 #Duplication Level Percentage of deduplicated Percentage of total 1 79.444754177292 21.56069694082949 2 7.35897700224764 3.9943398298121235 3 2.8979433475678085 2.359438791735671 4 1.693265359135247 1.8381569243576357 5 1.143277479652498 1.5513836950803124 6 0.8345647817794875 1.3589668838761615 7 0.6582455353681034 1.2504995267953958 8 0.5176053137082359 1.1237928967766773 9 0.4251855545494411 1.0385288849054575 >10 3.5884134768481757 21.247045674604212 >50 0.8886536599848138 17.102875950780028 >100 0.5411489184125211 21.315362805294527 >500 0.006471882181537081 1.1446448716874158 >1k 0.0012445927272186695 0.7099311234987636 >5k 0.0 0.0 >10k+ 2.489185454437339E-4 2.4043351999661717 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35591 2.405718947732003 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3107 0.21001289007342677 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2105 0.14228423997572043 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2070 0.13991846876472272 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1995 0.13484895902687044 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3518692634272725E-4 0.0 0.0 0.049208041188752716 0.0 2 1.3518692634272725E-4 0.0 0.0 0.20433503916703225 0.0 3 2.0278038951409088E-4 0.0 0.0 0.2781471009501613 0.0 4 2.0278038951409088E-4 0.0 0.0 0.4094136064289495 0.0 5 2.0278038951409088E-4 0.0 0.0 0.7159499619110835 0.0 6 2.0278038951409088E-4 0.0 0.0 1.0078185358850316 0.0 7 2.703738526854545E-4 0.0 0.0 1.2144517527998901 0.0 8 2.703738526854545E-4 0.0 0.0 1.765946818815046 0.0 9 2.703738526854545E-4 0.0 0.0 1.9965081216925673 0.0 10 2.703738526854545E-4 0.0 0.0 2.380438992505913 0.0 11 2.703738526854545E-4 0.0 0.0 2.687989249935617 0.0 12 3.3796731585681813E-4 0.0 0.0 2.9661363508857783 0.0 13 3.3796731585681813E-4 0.0 0.0 3.0810452382770968 0.0 14 3.3796731585681813E-4 0.0 0.0 3.1217365031062574 0.0 15 3.3796731585681813E-4 0.0 0.0 3.1841928630765977 0.0 16 3.3796731585681813E-4 0.0 0.0 3.3330336689799402 0.0 17 3.3796731585681813E-4 0.0 0.0 3.517699010364106 0.0 18 4.0556077902818177E-4 0.0 0.0 3.8284937540260358 0.0 19 4.7315424219954535E-4 0.0 0.0 3.930019135709424 0.0 20 5.40747705370909E-4 0.0 0.0 4.055607790281817 0.0 21 5.40747705370909E-4 0.0 0.0 4.204854156964188 0.0 22 5.40747705370909E-4 0.0 0.0 4.348355079276994 0.0 23 5.40747705370909E-4 0.0 0.0 4.5209211907534845 0.0 24 5.40747705370909E-4 0.0 0.0 4.644346854504395 0.0 25 5.40747705370909E-4 0.0 0.0 4.741208287228958 0.0 26 5.40747705370909E-4 0.0 0.0 4.850033762934854 0.0 27 6.083411685422726E-4 0.0 0.0 4.965483398031544 0.0 28 6.759346317136363E-4 0.0 0.0 5.086205323255599 0.0 29 6.759346317136363E-4 0.0 0.0 5.210847669343593 0.0 30 6.759346317136363E-4 0.0 0.0 5.365907073858701 0.0 31 7.435280948849998E-4 0.0 0.0 5.505149607991711 0.0 32 7.435280948849998E-4 0.0 0.0 5.630467888711419 0.0 33 7.435280948849998E-4 0.0 0.0 5.7711298855710265 0.0 34 8.111215580563635E-4 0.0 0.0 5.910980760872578 0.0 35 8.111215580563635E-4 0.0 0.0 6.101999887794851 0.0 36 8.111215580563635E-4 0.0 0.0 6.241039641538346 0.0 37 8.111215580563635E-4 0.0 0.0 6.383797035756266 0.0 38 8.111215580563635E-4 0.0 0.0 6.528582233869327 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTAC 35 1.4464604E-7 44.0 1 CTATCGA 20 7.857215E-4 44.0 10 CGCATCG 40 8.314601E-9 44.0 21 CGTCTAG 20 7.857215E-4 44.0 32 CTAAGCG 25 4.443462E-5 44.0 1 AGACCGG 40 8.314601E-9 44.0 2 TACTACG 20 7.857215E-4 44.0 1 GACGATA 25 4.443462E-5 44.0 11 CACCGTA 20 7.857215E-4 44.0 25 ATCGAGT 20 7.857215E-4 44.0 11 TACCGAA 35 1.4464604E-7 44.0 27 CGTTTTT 21900 0.0 43.23653 1 CGACGGT 280 0.0 42.428574 28 CGGTCTA 275 0.0 42.4 31 AGTACGG 150 0.0 41.066666 2 CTATACG 65 0.0 40.615387 1 TAGCTGA 130 0.0 40.615387 6 CGGGATA 255 0.0 40.549015 6 ATTCGGC 60 3.6379788E-12 40.333332 17 TCGATAG 55 7.8216544E-11 40.0 1 >>END_MODULE