##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546092_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1480196 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.000030401379277 31.0 28.0 33.0 23.0 33.0 2 28.861087315463628 31.0 28.0 33.0 16.0 33.0 3 28.309438074417173 31.0 28.0 33.0 16.0 34.0 4 32.12399776786317 35.0 32.0 35.0 25.0 37.0 5 33.695744347370216 35.0 33.0 35.0 28.0 37.0 6 33.54988055635875 35.0 33.0 37.0 28.0 37.0 7 34.31246470062073 35.0 35.0 37.0 31.0 37.0 8 34.76386505570884 35.0 35.0 37.0 32.0 37.0 9 36.62712978551489 39.0 37.0 39.0 32.0 39.0 10 36.31522852379009 38.0 35.0 39.0 32.0 39.0 11 36.498493442760285 39.0 35.0 39.0 32.0 39.0 12 35.15310742631381 37.0 34.0 39.0 29.0 39.0 13 35.18753935289651 37.0 34.0 39.0 27.0 39.0 14 35.95034576502031 38.0 34.0 40.0 27.0 41.0 15 36.595393447894736 38.0 35.0 40.0 31.0 41.0 16 36.262041648538435 38.0 34.0 40.0 31.0 41.0 17 35.7676388802564 37.0 34.0 40.0 30.0 41.0 18 35.46216649686934 37.0 34.0 39.0 29.0 40.0 19 34.93853111344714 37.0 33.0 39.0 27.0 40.0 20 35.076843877432445 35.0 34.0 39.0 29.0 40.0 21 35.228822399195785 35.0 34.0 39.0 30.0 40.0 22 35.612123664703866 35.0 34.0 39.0 31.0 40.0 23 36.01625798205102 36.0 35.0 40.0 31.0 41.0 24 35.586349375352995 35.0 34.0 40.0 31.0 41.0 25 35.276212069212455 35.0 34.0 39.0 30.0 41.0 26 35.40273652948664 35.0 34.0 40.0 30.0 41.0 27 35.7308565892625 36.0 34.0 40.0 31.0 41.0 28 35.65120835348832 36.0 35.0 40.0 31.0 41.0 29 35.784180608514006 36.0 35.0 40.0 31.0 41.0 30 35.440834186823906 36.0 35.0 40.0 30.0 41.0 31 34.71826231120743 35.0 34.0 39.0 28.0 41.0 32 34.59404227548244 35.0 34.0 40.0 26.0 41.0 33 34.19002956365238 35.0 34.0 40.0 23.0 41.0 34 33.71611124472705 35.0 33.0 40.0 20.0 41.0 35 33.42588954435764 35.0 33.0 40.0 18.0 41.0 36 32.99532764579826 35.0 33.0 40.0 15.0 41.0 37 32.9198997970539 35.0 33.0 40.0 15.0 41.0 38 32.802914614010575 35.0 33.0 40.0 15.0 41.0 39 32.6290639888231 35.0 32.0 40.0 15.0 40.0 40 32.39541047266713 35.0 32.0 39.0 12.0 40.0 41 32.120663074349615 35.0 31.0 39.0 10.0 40.0 42 32.29551829622564 35.0 32.0 39.0 10.0 40.0 43 32.10101635188853 35.0 31.0 39.0 10.0 40.0 44 31.871573764555503 35.0 31.0 39.0 10.0 40.0 45 31.760267559161083 35.0 31.0 39.0 10.0 40.0 46 31.611579142221707 35.0 31.0 38.0 10.0 40.0 47 31.585013741423435 35.0 31.0 38.0 10.0 40.0 48 31.602736394369394 35.0 31.0 38.0 10.0 40.0 49 31.675863196495598 35.0 31.0 38.0 10.0 40.0 50 31.8162067726166 35.0 31.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 4.0 12 6.0 13 22.0 14 60.0 15 142.0 16 364.0 17 879.0 18 1705.0 19 3071.0 20 4716.0 21 7014.0 22 9930.0 23 14228.0 24 20924.0 25 31946.0 26 45766.0 27 51457.0 28 47937.0 29 45824.0 30 48646.0 31 58158.0 32 76770.0 33 118577.0 34 191129.0 35 137687.0 36 132680.0 37 186277.0 38 203974.0 39 40299.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.13768987350324 20.855075949401293 26.826379749708824 25.180854427386645 2 40.45389934846466 18.885539482609058 28.536828906442118 12.123732262484157 3 28.047231582844432 17.834057111355524 41.425594988771756 12.693116317028286 4 25.030468937897414 23.93264135290191 37.21581466238255 13.821075046818123 5 19.47174563368635 27.97163348637613 38.654475488381266 13.902145391556253 6 17.586725001283614 35.8767352431705 36.824852924882926 9.711686830662966 7 73.4920915878708 5.000351304827198 19.130844834062515 2.37671227323949 8 74.97290899313334 3.31739850668425 18.73393793794876 2.97575456223365 9 71.49559923145313 4.772543636113055 20.2835975776181 3.4482595548157136 10 42.13239327764701 22.518774540668936 24.662274455545077 10.68655772613897 11 38.724331102097295 18.13030166275277 30.04743966339593 13.097927571754012 12 34.79762139608538 17.905601690586924 34.64703323073431 12.649743682593387 13 19.629765247305087 32.6727001018784 35.10143251299152 12.59610213782499 14 14.182581225729566 36.16602125664439 36.77127893873514 12.880118578890903 15 12.72149093768663 21.27049390756359 52.835300189974845 13.172714964774935 16 14.987069280014268 16.173195982153715 52.44636521109367 16.39336952673835 17 15.329321252050404 16.321689830265722 37.17865742104424 31.170331496639637 18 19.1848917305546 21.39831481776738 41.76257738839991 17.654216063278106 19 24.400484800661534 22.418990458020424 35.567249202132686 17.613275539185352 20 26.146537350458992 20.34737291547876 33.64000443184551 19.86608530221673 21 20.45222389467341 24.44622198681796 37.18453502103776 17.917019097470877 22 19.012009220400543 20.50039319117198 35.192974443924996 25.294623144502488 23 16.52085264383906 26.587154674110725 34.704458058257146 22.187534623793066 24 17.601723015060166 21.69287040364925 45.174490405324704 15.530916175965887 25 17.46039038073336 20.315012336204123 42.65752643568825 19.567070847374264 26 14.500444535723647 27.553310507527378 36.845052952446835 21.10119200430213 27 15.090231293693538 27.891373845085383 38.87735137779051 18.141043483430572 28 13.73014114347019 24.709160138251963 45.32426786722839 16.236430851049455 29 14.832495156046901 23.283808360514417 42.662525773613766 19.221170709824914 30 17.372631732554336 24.998175917243394 40.79554329291526 16.83364905728701 31 26.524595391421137 22.926761050563574 33.38409237695548 17.164551181059807 32 25.145183475701867 24.511686290194 34.76904409956519 15.57408613453894 33 24.036276276925488 23.82029136681899 32.47333461244322 19.670097743812306 34 17.472483373823465 25.561074344208468 33.553664514699406 23.412777767268658 35 17.293453029193433 23.98999862180414 35.54867058146354 23.167877767538894 36 27.64275812122178 23.83576229093985 30.669857235122915 17.851622352715452 37 18.391618407292007 30.13350934605958 31.714921537418018 19.759950709230402 38 19.133952530610813 31.37307491710557 28.307670065315676 21.18530248696794 39 19.36338160621972 27.526692411005026 30.6259441317231 22.483981851052157 40 21.686722569173273 23.277728084659056 32.054944074973854 22.980605271193816 41 16.46281978873068 23.098967974511485 33.161621839269934 27.276590397487897 42 20.45094028088172 25.04310239995244 28.929074257733433 25.576883061432405 43 20.472018570513633 23.32454620874533 30.338887552729503 25.864547668011532 44 18.57949893122262 26.916300273747527 32.93570581193301 21.568494983096834 45 18.187996724758072 32.411113122856705 27.857054065812907 21.54383608657232 46 22.20030320308932 28.187956189585705 29.787338974027765 19.82440163329721 47 20.73779418401347 25.999664909241748 30.136481925366642 23.126058981378144 48 20.198743950125525 25.046750565465654 33.1373007358485 21.617204748560326 49 20.11895721917908 24.04769368380944 34.15811149334277 21.675237603668705 50 18.139894986880115 28.464338506522108 32.65736429499877 20.738402211599006 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 791.0 1 1397.0 2 2003.0 3 27914.5 4 53826.0 5 36978.0 6 20130.0 7 20567.0 8 21004.0 9 22121.5 10 23239.0 11 22968.0 12 22697.0 13 21542.0 14 20387.0 15 18759.5 16 17132.0 17 15940.5 18 14749.0 19 13654.0 20 12559.0 21 11964.0 22 11369.0 23 11039.5 24 10710.0 25 10735.5 26 10761.0 27 11056.0 28 11351.0 29 14063.0 30 16775.0 31 18031.5 32 19288.0 33 22009.0 34 24730.0 35 27808.5 36 30887.0 37 33522.0 38 36157.0 39 45987.5 40 55818.0 41 77938.5 42 100059.0 43 121732.5 44 143406.0 45 143569.5 46 143733.0 47 135721.5 48 127710.0 49 122176.5 50 116643.0 51 106129.0 52 95615.0 53 84134.5 54 72654.0 55 67163.0 56 61672.0 57 55853.5 58 50035.0 59 44584.0 60 39133.0 61 34737.5 62 30342.0 63 26262.0 64 22182.0 65 18523.5 66 14865.0 67 12363.0 68 9861.0 69 8130.0 70 6399.0 71 5344.5 72 4290.0 73 3356.5 74 2423.0 75 1897.0 76 1371.0 77 1044.5 78 718.0 79 562.5 80 407.0 81 272.0 82 137.0 83 114.0 84 91.0 85 64.5 86 38.0 87 29.0 88 20.0 89 18.0 90 16.0 91 11.5 92 7.0 93 6.0 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1480196.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.81982149591483 #Duplication Level Percentage of deduplicated Percentage of total 1 79.08625538632465 21.2107925224156 2 7.51179884703122 4.029302083811923 3 2.8473644529987876 2.290974190897219 4 1.6760092045836488 1.7980107076977465 5 1.1988377350203119 1.6076307027905805 6 0.8913316983097078 1.4343214225390184 7 0.6955885464243549 1.3058892454792843 8 0.5387034106305155 1.1558343449880748 9 0.42802605618372097 1.0331624180203027 >10 3.6728159254663826 21.538447547893018 >50 0.9139288426113341 17.45151479982295 >100 0.5317471225620245 20.88003359862376 >500 0.006074217482691512 1.077645870275997 >1k 0.0012654619755607316 0.722774831613682 >5k 0.0 0.0 >10k+ 2.530923951121463E-4 2.463665713130972 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36295 2.4520401352253347 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3104 0.2097019583892944 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2152 0.14538615156371185 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2141 0.14464300673694563 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2030 0.13714399984866868 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.048979999945953104 0.0 2 0.0 0.0 0.0 0.20213539288040233 0.0 3 0.0 0.0 0.0 0.2745582341797978 0.0 4 0.0 0.0 0.0 0.4061624271380277 0.0 5 0.0 0.0 0.0 0.694840413026383 0.0 6 0.0 0.0 0.0 0.9750060127172347 0.0 7 0.0 0.0 0.0 1.1711286883628924 0.0 8 0.0 0.0 0.0 1.720785625687409 0.0 9 0.0 0.0 0.0 1.9439993081997249 0.0 10 0.0 0.0 0.0 2.3262459836400042 0.0 11 0.0 0.0 0.0 2.6147212936665145 0.0 12 0.0 0.0 0.0 2.9006293761096504 0.0 13 6.755862061510773E-5 0.0 0.0 3.008047582887672 0.0 14 1.3511724123021546E-4 0.0 0.0 3.0455426173290565 0.0 15 1.3511724123021546E-4 0.0 0.0 3.103035003472513 0.0 16 1.3511724123021546E-4 0.0 0.0 3.2475428929682284 0.0 17 2.026758618453232E-4 0.0 0.0 3.4231953065675085 0.0 18 2.026758618453232E-4 0.0 0.0 3.725587692440731 0.0 19 2.026758618453232E-4 0.0 0.0 3.824628630262479 0.0 20 2.7023448246043093E-4 0.0 0.0 3.954543857705331 0.0 21 2.7023448246043093E-4 0.0 0.0 4.097970809271205 0.0 22 2.7023448246043093E-4 0.0 0.0 4.237141567738327 0.0 23 2.7023448246043093E-4 0.0 0.0 4.403470891692722 0.0 24 2.7023448246043093E-4 0.0 0.0 4.527103167418369 0.0 25 2.7023448246043093E-4 0.0 0.0 4.621482560417674 0.0 26 2.7023448246043093E-4 0.0 0.0 4.722888049960951 0.0 27 2.7023448246043093E-4 0.0 0.0 4.830576491221433 0.0 28 3.3779310307553863E-4 0.0 0.0 4.954141208326464 0.0 29 4.053517236906464E-4 0.0 0.0 5.07655742888104 0.0 30 4.053517236906464E-4 0.0 0.0 5.235793097670849 0.0 31 4.053517236906464E-4 0.0 0.0 5.376720380273964 0.0 32 4.053517236906464E-4 0.0 0.0 5.493123883593794 0.0 33 5.404689649208619E-4 0.0 0.0 5.634388959299985 0.0 34 5.404689649208619E-4 0.0 0.0 5.7753162419030994 0.0 35 6.080275855359696E-4 0.0 0.0 5.968466338241693 0.0 36 6.080275855359696E-4 0.0 0.0 6.1046645174017495 0.0 37 6.080275855359696E-4 0.0 0.0 6.23957908277012 0.0 38 6.080275855359696E-4 0.0 0.0 6.394828792943637 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGGAC 20 7.857217E-4 44.0 42 CTATCGA 25 4.4434644E-5 44.0 10 CCGGAAC 20 7.857217E-4 44.0 27 TCGATAG 80 0.0 44.0 1 TAGCCGT 40 8.314601E-9 44.0 44 TACGCTA 25 4.4434644E-5 44.0 36 CCGTAAT 25 4.4434644E-5 44.0 14 CGGATTA 20 7.857217E-4 44.0 19 GCGATAC 35 1.4464604E-7 44.0 9 GACGATA 35 1.4464604E-7 44.0 11 TATCGCG 25 4.4434644E-5 44.0 1 TAGTCCG 25 4.4434644E-5 44.0 1 TACGTTC 20 7.857217E-4 44.0 31 GTCGGTA 30 2.5282134E-6 44.0 10 TAGTACG 70 0.0 44.0 1 CGTTTTT 21550 0.0 43.438515 1 CGACGGT 225 0.0 42.044445 28 CGGTCTA 225 0.0 42.044445 31 AGTACGG 95 0.0 41.68421 2 ATTCGGC 70 0.0 40.857143 17 >>END_MODULE