##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546089_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 452215 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.232192651725395 31.0 28.0 33.0 25.0 33.0 2 28.893108366595534 31.0 28.0 33.0 16.0 33.0 3 28.32945612153511 31.0 28.0 33.0 16.0 34.0 4 32.154079364903865 35.0 32.0 35.0 25.0 37.0 5 33.703950554492884 35.0 33.0 35.0 28.0 37.0 6 33.55689439757637 35.0 33.0 37.0 28.0 37.0 7 34.311186050882874 35.0 35.0 37.0 31.0 37.0 8 34.81302920071205 35.0 35.0 37.0 32.0 37.0 9 36.65750583240273 39.0 37.0 39.0 32.0 39.0 10 36.453206992249264 39.0 35.0 39.0 32.0 39.0 11 36.49930232301007 39.0 35.0 39.0 32.0 39.0 12 35.17574162732328 37.0 34.0 39.0 30.0 39.0 13 34.97896796877591 37.0 33.0 39.0 27.0 39.0 14 35.749409020045775 38.0 33.0 40.0 27.0 41.0 15 36.424253950001656 38.0 35.0 40.0 31.0 41.0 16 36.05406720254746 37.0 34.0 40.0 31.0 41.0 17 35.49926915294716 36.0 34.0 40.0 29.0 41.0 18 35.220361995953255 36.0 33.0 39.0 29.0 40.0 19 34.6428866800084 36.0 33.0 39.0 27.0 40.0 20 34.948228165806086 35.0 34.0 39.0 29.0 40.0 21 35.15582632155059 35.0 34.0 39.0 30.0 40.0 22 35.444633636655134 35.0 34.0 39.0 31.0 40.0 23 35.84448326570326 35.0 35.0 40.0 31.0 41.0 24 35.5958913348739 35.0 34.0 40.0 31.0 41.0 25 35.2101787866391 35.0 34.0 39.0 30.0 41.0 26 35.33183773205223 35.0 34.0 39.0 31.0 41.0 27 35.58810300410203 35.0 34.0 40.0 31.0 41.0 28 35.437294207401344 35.0 35.0 40.0 31.0 41.0 29 35.4902756432228 36.0 35.0 40.0 31.0 41.0 30 35.10190064460489 36.0 34.0 40.0 30.0 41.0 31 34.40726203244032 35.0 34.0 39.0 27.0 41.0 32 34.19573432990945 35.0 34.0 39.0 25.0 41.0 33 33.78661698528355 35.0 33.0 40.0 22.0 41.0 34 33.37854339197063 35.0 33.0 40.0 18.0 41.0 35 33.05303450792211 35.0 33.0 40.0 16.0 41.0 36 32.60871266985836 35.0 33.0 39.0 15.0 41.0 37 32.46359585595347 35.0 32.0 39.0 14.0 40.0 38 32.34957929303539 35.0 32.0 39.0 12.0 40.0 39 32.131382196521564 35.0 31.0 39.0 12.0 40.0 40 31.94917240693033 35.0 31.0 39.0 10.0 40.0 41 31.701186382583504 35.0 31.0 38.0 10.0 40.0 42 31.79893634664927 35.0 31.0 39.0 10.0 40.0 43 31.56248687018343 35.0 31.0 38.0 10.0 40.0 44 31.37289342458786 35.0 30.0 38.0 10.0 40.0 45 31.269741162942406 35.0 30.0 38.0 10.0 40.0 46 31.115785632940085 35.0 30.0 38.0 10.0 40.0 47 31.167449111595147 35.0 30.0 38.0 10.0 40.0 48 31.24691131430846 35.0 31.0 38.0 10.0 40.0 49 31.115818803002995 35.0 30.0 38.0 10.0 40.0 50 31.193848058998487 35.0 30.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 6.0 13 8.0 14 21.0 15 34.0 16 105.0 17 250.0 18 537.0 19 838.0 20 1465.0 21 2244.0 22 3289.0 23 4857.0 24 6989.0 25 10659.0 26 15005.0 27 16853.0 28 15274.0 29 14528.0 30 15045.0 31 18269.0 32 24753.0 33 38712.0 34 64300.0 35 42329.0 36 37559.0 37 50593.0 38 55591.0 39 12100.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.897416052099114 22.018951162610705 26.38567937817189 25.697953407118295 2 40.06390765454485 20.0650133233086 28.06320002653605 11.807878995610494 3 27.177780480523644 18.09625952257223 42.25379520803158 12.47216478887255 4 24.54739449155822 23.789569120882767 38.0162091040766 13.646827283482416 5 19.19418860497772 27.834326592439435 38.748382959433016 14.223101843149829 6 17.19735081764205 35.32036752429707 37.1347699656137 10.347511692447178 7 74.39735524031711 4.683391749499685 18.68845571243767 2.2307972977455415 8 76.09123978638479 3.181672434572051 18.232699048019192 2.49438873102396 9 73.57142067379453 3.9684663268578 19.268931813407338 3.191181185940316 10 46.44405868889798 20.64438375551452 23.718364052497154 9.193193503090344 11 41.43007197903652 17.753502205809184 28.466105724047193 12.350320091107106 12 36.75021836958084 17.78092279115023 34.38010680760258 11.088752031666353 13 19.32598432161693 36.02733213183995 32.50046990922459 12.146213637318532 14 12.227811992083412 39.4022754663158 35.95546366219608 12.414448879404707 15 11.021969638335747 20.509049898831307 55.62840684187831 12.840573620954634 16 12.672733102617117 14.562984421127117 54.04929071348805 18.71499176276771 17 12.615017193149278 14.21757349933107 37.32472385922625 35.8426854482934 18 18.82688544165939 19.966387669581948 42.0773304733368 19.12939641542187 19 25.980562343133247 21.491547162301117 33.34232610594518 19.185564388620456 20 26.7405990513362 18.503809028891123 33.13003770330484 21.62555421646783 21 20.4110876463629 24.29463861216457 36.015390909191424 19.278882832281106 22 18.610616631469547 20.5358070829141 32.82973806706987 28.023838218546487 23 16.090576385126543 26.55639463529516 33.003328062978895 24.349700916599403 24 16.504981037780702 20.482292714748514 46.193514147031834 16.819212100438953 25 16.01295843791117 20.898466437424677 42.60318653737713 20.48538858728702 26 13.626482978229381 28.27769976670389 35.298254149022036 22.79756310604469 27 14.043320102163795 28.675740521654525 37.70993885651737 19.57100051966432 28 13.185321141492432 23.329168647656534 47.541324370045224 15.94418584080581 29 13.175812390124166 20.772420198356976 45.68468538195327 20.367082029565584 30 17.046316464513563 25.341928065190228 40.81045520383004 16.80130026646617 31 27.371935915438456 23.33314905520604 32.3761927401789 16.918722289176607 32 26.577402341806444 23.776522229470494 33.165419103744895 16.480656324978163 33 24.481275499485864 23.390201563415634 32.310516015612045 19.81800692148646 34 18.13318885928154 24.058246630474443 32.924604446999766 24.883960063244253 35 19.083179461097043 22.889554747188836 35.413464834204966 22.61380095750915 36 30.005196643189635 22.341143040367967 30.19316033302743 17.46049998341497 37 19.053326404475747 30.075959444069746 31.473082493946464 19.397631657508043 38 20.040467476753314 30.6133144632531 28.099687095739856 21.24653096425373 39 20.18309874727729 27.858651305241978 29.673053746558608 22.285196200922126 40 23.26216512057318 23.1810090333138 31.18560861537101 22.371217230742012 41 17.205753900246563 21.729265946507745 32.283979965282 28.78100018796369 42 22.232124100262045 24.004511128556107 27.11895890229205 26.6444058688898 43 21.19036299105514 24.28955253585131 28.02074234600798 26.49934212708557 44 18.749709761949514 27.083798635604744 32.045818913569875 22.120672688875867 45 17.92156385789945 34.06344327366407 26.263834680406443 21.75115818803003 46 22.033103722786727 29.485311190473556 28.539964397465805 19.941620689273908 47 21.208495958780667 25.09757526840109 29.568678615260442 24.125250157557797 48 20.966796767024533 23.630795086408014 32.38326902026691 23.01913912630054 49 19.271143150934844 24.101146578508008 34.47939586258749 22.14831440796966 50 18.535652289287174 28.921198987207415 31.983459195294273 20.559689528211138 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 261.0 1 397.0 2 533.0 3 6545.0 4 12557.0 5 9172.0 6 5787.0 7 6302.5 8 6818.0 9 7341.0 10 7864.0 11 7746.5 12 7629.0 13 7177.5 14 6726.0 15 6203.0 16 5680.0 17 5159.0 18 4638.0 19 4247.0 20 3856.0 21 3471.0 22 3086.0 23 2930.0 24 2774.0 25 2588.5 26 2403.0 27 2571.5 28 2740.0 29 3232.5 30 3725.0 31 4712.5 32 5700.0 33 6361.0 34 7022.0 35 8322.5 36 9623.0 37 9450.0 38 9277.0 39 12738.0 40 16199.0 41 22648.0 42 29097.0 43 35874.0 44 42651.0 45 41775.0 46 40899.0 47 40726.0 48 40553.0 49 40366.5 50 40180.0 51 36900.0 52 33620.0 53 28717.5 54 23815.0 55 20469.0 56 17123.0 57 15332.0 58 13541.0 59 13128.0 60 12715.0 61 11402.0 62 10089.0 63 8749.5 64 7410.0 65 6360.5 66 5311.0 67 4583.0 68 3855.0 69 3154.0 70 2453.0 71 2142.0 72 1831.0 73 1476.0 74 1121.0 75 818.0 76 515.0 77 395.0 78 275.0 79 192.0 80 109.0 81 88.0 82 67.0 83 50.0 84 33.0 85 28.0 86 23.0 87 18.0 88 13.0 89 9.5 90 6.0 91 6.5 92 7.0 93 5.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 452215.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.347208118412034 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4813491978031 25.386525359151058 2 7.401069688064202 4.788078829973671 3 3.1412217799999214 3.048292639912385 4 1.7927608138729463 2.319632286115277 5 1.0976170476375955 1.7752423537125135 6 0.8063605886689079 1.5650108268095047 7 0.5992663358677096 1.3569215019269707 8 0.4680898266835004 1.2113119233474083 9 0.394062428956653 1.147213746099703 >10 5.082210636192146 38.265234856231224 >50 0.6723789945139689 13.857338760931814 >100 0.06019262616198297 2.8902828713723823 >500 0.002736028461908317 0.5650909020504526 >1k 0.0 0.0 >5k 6.840071154770792E-4 1.8238231423656543 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8243 1.8228055239211436 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 815 0.1802240084915361 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 580 0.12825757659520362 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 580 0.12825757659520362 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 579 0.12803644284245325 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2113375275035105E-4 0.0 0.0 0.05727364196234092 0.0 2 2.2113375275035105E-4 0.0 0.0 0.19371316740930752 0.0 3 2.2113375275035105E-4 0.0 0.0 0.26779297458067514 0.0 4 2.2113375275035105E-4 0.0 0.0 0.38388819477460945 0.0 5 2.2113375275035105E-4 0.0 0.0 0.620501310217485 0.0 6 2.2113375275035105E-4 0.0 0.0 0.8761319283968909 0.0 7 2.2113375275035105E-4 0.0 0.0 1.0214168039538716 0.0 8 2.2113375275035105E-4 0.0 0.0 1.422332297690258 0.0 9 2.2113375275035105E-4 0.0 0.0 1.6217949426710745 0.0 10 2.2113375275035105E-4 0.0 0.0 1.96543679444512 0.0 11 2.2113375275035105E-4 0.0 0.0 2.2150968013002665 0.0 12 2.2113375275035105E-4 0.0 0.0 2.5231361188815056 0.0 13 4.422675055007021E-4 0.0 0.0 2.8386939840562566 0.0 14 4.422675055007021E-4 0.0 0.0 3.027984476410557 0.0 15 4.422675055007021E-4 0.0 0.0 3.126831263889964 0.0 16 4.422675055007021E-4 0.0 0.0 3.239609477792643 0.0 17 4.422675055007021E-4 0.0 0.0 3.3627809780745883 0.0 18 4.422675055007021E-4 0.0 0.0 3.632564156430017 0.0 19 4.422675055007021E-4 0.0 0.0 3.6997888172661235 0.0 20 4.422675055007021E-4 0.0 0.0 3.8138938336853045 0.0 21 4.422675055007021E-4 0.0 0.0 3.9036741373019472 0.0 22 4.422675055007021E-4 0.0 0.0 3.977975078226065 0.0 23 4.422675055007021E-4 0.0 0.0 4.090753292128744 0.0 24 4.422675055007021E-4 0.0 0.0 4.163064029278109 0.0 25 4.422675055007021E-4 0.0 0.0 4.224096945037206 0.0 26 4.422675055007021E-4 0.0 0.0 4.292206140884314 0.0 27 4.422675055007021E-4 0.0 0.0 4.362084406753425 0.0 28 6.634012582510531E-4 0.0 0.0 4.421127118737768 0.0 29 6.634012582510531E-4 0.0 0.0 4.491668785865131 0.0 30 6.634012582510531E-4 0.0 0.0 4.583218159503776 0.0 31 6.634012582510531E-4 0.0 0.0 4.661941775482901 0.0 32 6.634012582510531E-4 0.0 0.0 4.727839633802505 0.0 33 6.634012582510531E-4 0.0 0.0 4.844377121501941 0.0 34 6.634012582510531E-4 0.0 0.0 4.965558418009133 0.0 35 6.634012582510531E-4 0.0 0.0 5.100892274692348 0.0 36 8.845350110014042E-4 0.0 0.0 5.176962285638468 0.0 37 8.845350110014042E-4 0.0 0.0 5.2601085766726 0.0 38 8.845350110014042E-4 0.0 0.0 5.336620855124222 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 7.851409E-4 44.000004 1 TTGATCG 20 7.851409E-4 44.000004 1 TAATACG 20 7.851409E-4 44.000004 1 AGTCCGG 20 7.851409E-4 44.000004 12 CAAACGA 20 7.851409E-4 44.000004 24 GTACACT 40 8.292773E-9 44.000004 18 CTATATG 20 7.851409E-4 44.000004 1 TAAACGG 20 7.851409E-4 44.000004 2 CCTACGT 20 7.851409E-4 44.000004 31 CGCTCCA 20 7.851409E-4 44.000004 15 CTACGTG 20 7.851409E-4 44.000004 32 ATTGGAT 20 7.851409E-4 44.000004 17 GCTACGT 20 7.851409E-4 44.000004 29 CACGTGA 20 7.851409E-4 44.000004 43 GATTCGC 20 7.851409E-4 44.000004 9 TGCACAT 20 7.851409E-4 44.000004 32 AGTCGAG 20 7.851409E-4 44.000004 1 TCTATAC 20 7.851409E-4 44.000004 25 GTTTGCG 35 1.4434772E-7 44.0 1 TACCAAC 30 2.524297E-6 44.0 44 >>END_MODULE